Wall clock time and date at job start Tue Mar 31 2020 23:29:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47379 * 2 1 4 4 C 1.50696 * 109.46878 * 239.99953 * 2 1 3 5 5 N 1.34778 * 120.00092 * 60.00091 * 4 2 1 6 6 O 1.21280 * 120.00482 * 239.99844 * 4 2 1 7 7 C 1.50698 * 109.47304 * 120.00244 * 2 1 3 8 8 O 1.21282 * 119.99664 * 244.74740 * 7 2 1 9 9 N 1.34776 * 120.00510 * 64.75054 * 7 2 1 10 10 C 1.47157 * 120.98467 * 355.81818 * 9 7 2 11 11 C 1.53293 * 108.37405 * 129.38252 * 10 9 7 12 12 O 1.42970 * 109.22625 * 52.35402 * 11 10 9 13 13 C 1.42895 * 114.20827 * 297.50396 * 12 11 10 14 14 C 1.52987 * 109.56053 * 302.52715 * 13 12 11 15 15 C 1.53202 * 109.34503 * 300.95883 * 14 13 12 16 16 N 1.46927 * 108.77333 * 305.42852 * 15 14 13 17 17 C 1.36937 * 120.64342 * 233.64935 * 16 15 14 18 18 H 1.08006 * 119.99890 * 22.84819 * 17 16 15 19 19 C 1.38807 * 120.00518 * 202.84951 * 17 16 15 20 20 N 1.31618 * 120.00068 * 213.39814 * 19 17 16 21 21 Si 1.86808 * 119.99937 * 33.39200 * 19 17 16 22 22 H 1.48497 * 109.47231 * 270.00253 * 21 19 17 23 23 H 1.48500 * 109.46746 * 30.00476 * 21 19 17 24 24 H 1.48496 * 109.46800 * 150.00348 * 21 19 17 25 25 C 1.46930 * 118.71709 * 53.92848 * 16 15 14 26 26 C 1.52988 * 109.54981 * 182.22227 * 13 12 11 27 27 C 1.47151 * 120.98933 * 175.79498 * 9 7 2 28 28 H 1.09003 * 109.46807 * 306.45908 * 1 2 3 29 29 H 1.08996 * 109.47327 * 66.45920 * 1 2 3 30 30 H 1.09007 * 109.47099 * 186.46720 * 1 2 3 31 31 H 1.08992 * 109.47484 * 184.35178 * 3 2 1 32 32 H 1.09002 * 109.46821 * 304.34980 * 3 2 1 33 33 H 1.09001 * 109.47202 * 64.34724 * 3 2 1 34 34 H 0.96998 * 120.00095 * 359.97438 * 5 4 2 35 35 H 0.97000 * 120.00281 * 180.02562 * 5 4 2 36 36 H 1.09004 * 109.68294 * 249.11073 * 10 9 7 37 37 H 1.09008 * 109.67899 * 9.66412 * 10 9 7 38 38 H 1.09000 * 109.51111 * 172.27561 * 11 10 9 39 39 H 1.09002 * 109.51761 * 292.37831 * 11 10 9 40 40 H 1.08991 * 109.49261 * 180.99779 * 14 13 12 41 41 H 1.09002 * 109.51087 * 60.92775 * 14 13 12 42 42 H 1.08998 * 109.58088 * 185.64246 * 15 14 13 43 43 H 1.08999 * 109.70385 * 65.28538 * 15 14 13 44 44 H 0.97004 * 120.00247 * 354.92542 * 20 19 17 45 45 H 1.09006 * 109.58886 * 65.85004 * 25 16 15 46 46 H 1.09000 * 109.58878 * 186.27846 * 25 16 15 47 47 H 1.08997 * 109.49647 * 178.99983 * 26 13 12 48 48 H 1.09005 * 109.49719 * 299.05499 * 26 13 12 49 49 H 1.09000 * 109.67500 * 110.76966 * 27 9 7 50 50 H 1.08991 * 109.67932 * 350.22732 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7104 -1.2304 5 7 1.7067 -0.2500 -2.4546 6 8 2.7295 -1.6965 -1.1193 7 6 2.0324 -0.7104 1.2304 8 8 2.6570 -0.0989 2.0711 9 7 1.7877 -2.0253 1.3966 10 6 0.9554 -2.7682 0.4369 11 6 1.7163 -4.0295 0.0125 12 8 2.1303 -4.7446 1.1793 13 6 3.0360 -4.0241 2.0174 14 6 4.2747 -3.6280 1.2116 15 6 4.9485 -4.8900 0.6635 16 7 5.2214 -5.8037 1.7813 17 6 6.4824 -6.2958 1.9885 18 1 7.3394 -5.7665 1.5989 19 6 6.6592 -7.4750 2.6993 20 7 7.7252 -7.6344 3.4547 21 14 5.3843 -8.8354 2.5836 22 1 4.3586 -8.6437 3.6402 23 1 4.7344 -8.7925 1.2491 24 1 6.0466 -10.1514 2.7697 25 6 4.1139 -6.1842 2.6687 26 6 3.4506 -4.9037 3.1984 27 6 2.3452 -2.7608 2.5427 28 1 -0.3633 0.6107 0.8266 29 1 -0.3634 0.4104 -0.9421 30 1 -0.3634 -1.0212 0.1158 31 1 3.1272 1.4434 -0.0780 32 1 1.6145 1.9782 -0.8485 33 1 1.7417 1.9333 0.9264 34 1 1.1487 0.5385 -2.5436 35 1 2.0296 -0.7074 -3.2466 36 1 0.0133 -3.0487 0.9080 37 1 0.7588 -2.1466 -0.4367 38 1 1.0646 -4.6623 -0.5901 39 1 2.5918 -3.7473 -0.5722 40 1 4.9725 -3.0940 1.8564 41 1 3.9795 -2.9843 0.3830 42 1 5.8846 -4.6212 0.1743 43 1 4.2880 -5.3772 -0.0538 44 1 8.4226 -6.9603 3.4580 45 1 3.3851 -6.7731 2.1117 46 1 4.4991 -6.7701 3.5033 47 1 4.1551 -4.3597 3.8275 48 1 2.5691 -5.1670 3.7831 49 1 1.5427 -3.0386 3.2260 50 1 3.0705 -2.1351 3.0626 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000949118326.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:29:15 Heat of formation + Delta-G solvation = -71.054321 kcal Electronic energy + Delta-G solvation = -33178.705659 eV Core-core repulsion = 29014.547821 eV Total energy + Delta-G solvation = -4164.157838 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.62031 -39.74047 -38.57906 -36.33803 -35.25522 -34.63435 -33.54555 -32.83768 -31.24238 -30.14616 -28.85834 -27.93605 -27.03680 -24.64065 -23.74859 -23.41643 -22.55218 -21.62198 -20.43626 -19.27786 -18.92863 -18.30887 -17.31019 -17.15931 -16.58169 -16.12085 -15.64442 -15.48168 -15.11744 -14.99758 -14.70118 -14.23063 -14.21337 -14.06014 -13.86928 -13.39246 -13.25101 -13.12422 -12.95068 -12.83363 -12.67141 -12.42447 -12.21454 -11.93211 -11.80606 -11.75913 -11.52863 -11.43207 -11.17503 -10.64776 -10.45150 -10.37177 -10.23488 -10.15202 -10.03986 -9.86269 -9.79890 -9.54883 -9.45969 -9.05796 -8.37936 -8.15114 -6.94550 -6.17966 -3.07009 2.12331 2.34095 2.79727 3.13819 3.52692 3.65763 3.82795 3.95336 4.02749 4.25557 4.34448 4.50554 4.70254 4.84125 4.89425 4.95579 5.07537 5.11120 5.17558 5.19339 5.26818 5.29520 5.31789 5.39852 5.53557 5.58856 5.69847 5.73641 5.77937 5.89135 5.95598 6.03675 6.26028 6.30152 6.36125 6.40008 6.44760 6.51106 6.66933 6.80026 6.80290 6.86828 6.91589 7.14116 7.30123 7.59819 7.82456 8.02314 8.14827 8.57107 9.19917 9.80866 10.39438 11.21663 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.022333 B = 0.003505 C = 0.003492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.441631 B = 7985.990086 C = 8017.398881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.106 4.106 3 C -0.126 4.126 4 C 0.524 3.476 5 N -0.850 5.850 6 O -0.514 6.514 7 C 0.541 3.459 8 O -0.535 6.535 9 N -0.590 5.590 10 C 0.078 3.922 11 C 0.042 3.958 12 O -0.363 6.363 13 C 0.120 3.880 14 C -0.159 4.159 15 C 0.156 3.844 16 N -0.602 5.602 17 C -0.350 4.350 18 H 0.065 0.935 19 C -0.014 4.014 20 N -0.911 5.911 21 Si 1.050 2.950 22 H -0.292 1.292 23 H -0.287 1.287 24 H -0.299 1.299 25 C 0.141 3.859 26 C -0.119 4.119 27 C 0.091 3.909 28 H 0.077 0.923 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.068 0.932 32 H 0.066 0.934 33 H 0.079 0.921 34 H 0.401 0.599 35 H 0.406 0.594 36 H 0.068 0.932 37 H 0.087 0.913 38 H 0.092 0.908 39 H 0.083 0.917 40 H 0.063 0.937 41 H 0.076 0.924 42 H 0.052 0.948 43 H 0.021 0.979 44 H 0.263 0.737 45 H 0.030 0.970 46 H 0.073 0.927 47 H 0.077 0.923 48 H 0.061 0.939 49 H 0.071 0.929 50 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.686 18.679 -11.656 30.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.112 4.112 3 C -0.184 4.184 4 C 0.308 3.692 5 N -0.415 5.415 6 O -0.388 6.388 7 C 0.327 3.673 8 O -0.411 6.411 9 N -0.322 5.322 10 C -0.045 4.045 11 C -0.035 4.035 12 O -0.282 6.282 13 C 0.080 3.920 14 C -0.198 4.198 15 C 0.030 3.970 16 N -0.326 5.326 17 C -0.478 4.478 18 H 0.082 0.918 19 C -0.216 4.216 20 N -0.550 5.550 21 Si 0.881 3.119 22 H -0.220 1.220 23 H -0.214 1.214 24 H -0.226 1.226 25 C 0.015 3.985 26 C -0.159 4.159 27 C -0.031 4.031 28 H 0.096 0.904 29 H 0.092 0.908 30 H 0.094 0.906 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.098 0.902 34 H 0.229 0.771 35 H 0.238 0.762 36 H 0.086 0.914 37 H 0.105 0.895 38 H 0.110 0.890 39 H 0.101 0.899 40 H 0.082 0.918 41 H 0.095 0.905 42 H 0.070 0.930 43 H 0.039 0.961 44 H 0.073 0.927 45 H 0.048 0.952 46 H 0.091 0.909 47 H 0.096 0.904 48 H 0.080 0.920 49 H 0.090 0.910 50 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -20.317 16.688 -10.314 28.243 hybrid contribution 0.191 2.070 -1.251 2.426 sum -20.126 18.758 -11.564 29.844 Atomic orbital electron populations 1.22134 0.90469 1.04368 1.03935 1.21109 0.98992 0.98493 0.92624 1.21661 1.02368 0.90964 1.03360 1.20096 0.80245 0.84090 0.84788 1.43790 1.56019 1.33827 1.07820 1.90847 1.36484 1.25118 1.86385 1.19645 0.79434 0.81673 0.86540 1.90705 1.40725 1.65445 1.44258 1.47824 1.50337 1.07979 1.26059 1.22617 0.93839 0.95135 0.92917 1.22975 0.99681 0.91892 0.88983 1.87993 1.63601 1.41669 1.34923 1.21689 0.88639 0.90074 0.91631 1.22565 0.96574 1.00072 1.00567 1.20759 0.97088 0.89249 0.89949 1.44386 1.06514 1.53664 1.28018 1.20125 0.83200 1.05979 1.38514 0.91766 1.26013 1.02183 0.98022 0.95362 1.70937 1.11620 1.41004 1.31472 0.83987 0.75013 0.76545 0.76320 1.22046 1.21364 1.22641 1.21236 0.89638 0.93640 0.94012 1.22097 0.99998 0.98895 0.94930 1.22457 0.98921 0.93976 0.87769 0.90374 0.90847 0.90561 0.91321 0.91538 0.90196 0.77067 0.76246 0.91355 0.89495 0.89024 0.89900 0.91822 0.90547 0.92969 0.96100 0.92674 0.95203 0.90891 0.90441 0.92037 0.91033 0.88402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 8.11 37.16 0.30 -0.55 16 2 C -0.11 -0.94 0.60 -156.82 -0.09 -1.04 16 3 C -0.13 -0.96 7.71 37.15 0.29 -0.68 16 4 C 0.52 4.79 5.02 -10.99 -0.06 4.73 16 5 N -0.85 -3.88 8.63 31.22 0.27 -3.61 16 6 O -0.51 -6.86 11.20 5.56 0.06 -6.80 16 7 C 0.54 7.46 6.06 -10.99 -0.07 7.39 16 8 O -0.53 -9.16 15.39 5.56 0.09 -9.08 16 9 N -0.59 -8.15 2.21 -172.30 -0.38 -8.53 16 10 C 0.08 0.90 4.00 -3.53 -0.01 0.88 16 11 C 0.04 0.60 6.32 37.31 0.24 0.83 16 12 O -0.36 -6.41 9.00 -35.23 -0.32 -6.72 16 13 C 0.12 2.16 0.68 -90.50 -0.06 2.10 16 14 C -0.16 -3.16 4.33 -26.63 -0.12 -3.28 16 15 C 0.16 3.56 6.28 -3.71 -0.02 3.54 16 16 N -0.60 -15.66 2.79 -172.04 -0.48 -16.14 16 17 C -0.35 -10.40 9.81 -15.06 -0.15 -10.55 16 18 H 0.06 2.03 8.03 -52.48 -0.42 1.61 16 19 C -0.01 -0.41 4.97 -17.43 -0.09 -0.50 16 20 N -0.91 -29.05 13.70 55.49 0.76 -28.29 16 21 Si 1.05 27.50 25.45 -169.99 -4.33 23.17 16 22 H -0.29 -7.19 6.49 56.52 0.37 -6.82 16 23 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 24 H -0.30 -7.85 7.11 56.52 0.40 -7.45 16 25 C 0.14 3.33 4.14 -3.48 -0.01 3.32 16 26 C -0.12 -2.34 5.12 -26.41 -0.14 -2.48 16 27 C 0.09 1.43 5.28 -3.55 -0.02 1.41 16 28 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.07 0.19 7.39 -51.93 -0.38 -0.19 16 30 H 0.08 0.46 5.15 -51.92 -0.27 0.19 16 31 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.07 0.27 7.69 -51.93 -0.40 -0.13 16 33 H 0.08 0.66 7.91 -51.93 -0.41 0.25 16 34 H 0.40 0.62 7.68 -40.82 -0.31 0.31 16 35 H 0.41 1.59 8.93 -40.82 -0.36 1.23 16 36 H 0.07 0.69 8.12 -51.93 -0.42 0.27 16 37 H 0.09 0.82 3.26 -51.92 -0.17 0.65 16 38 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.08 1.33 4.49 -51.93 -0.23 1.10 16 40 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 41 H 0.08 1.48 4.74 -51.93 -0.25 1.23 16 42 H 0.05 1.22 7.91 -51.93 -0.41 0.81 16 43 H 0.02 0.48 7.83 -51.93 -0.41 0.07 16 44 H 0.26 8.34 8.73 -40.82 -0.36 7.98 16 45 H 0.03 0.71 7.33 -51.93 -0.38 0.33 16 46 H 0.07 1.86 4.71 -51.93 -0.24 1.61 16 47 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 48 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 49 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 50 H 0.10 1.67 7.11 -51.93 -0.37 1.30 16 LS Contribution 361.48 15.07 5.45 5.45 Total: -1.00 -37.35 361.48 -6.48 -43.82 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: -7.59 Total: 1.59 kcal Atomic # 6 Polarization: 5.15 SS G_CDS: -0.01 Total: 5.14 kcal Atomic # 7 Polarization: -56.74 SS G_CDS: 0.17 Total: -56.57 kcal Atomic # 8 Polarization: -22.43 SS G_CDS: -0.17 Total: -22.60 kcal Atomic # 14 Polarization: 27.50 SS G_CDS: -4.33 Total: 23.17 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -37.35 -6.48 -43.82 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000949118326.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.231 kcal (2) G-P(sol) polarization free energy of solvation -37.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds