Wall clock time and date at job start Tue Mar 31 2020 23:29:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47379 * 2 1 4 4 C 1.50696 * 109.46878 * 239.99953 * 2 1 3 5 5 N 1.34778 * 120.00092 * 60.00091 * 4 2 1 6 6 O 1.21280 * 120.00482 * 239.99844 * 4 2 1 7 7 C 1.50698 * 109.47304 * 120.00244 * 2 1 3 8 8 O 1.21282 * 119.99664 * 244.74740 * 7 2 1 9 9 N 1.34776 * 120.00510 * 64.75054 * 7 2 1 10 10 C 1.47157 * 120.98467 * 355.81818 * 9 7 2 11 11 C 1.53293 * 108.37405 * 129.38252 * 10 9 7 12 12 O 1.42970 * 109.22625 * 52.35402 * 11 10 9 13 13 C 1.42895 * 114.20827 * 297.50396 * 12 11 10 14 14 C 1.52987 * 109.56053 * 302.52715 * 13 12 11 15 15 C 1.53202 * 109.34503 * 300.95883 * 14 13 12 16 16 N 1.46927 * 108.77333 * 305.42852 * 15 14 13 17 17 C 1.36937 * 120.64342 * 233.64935 * 16 15 14 18 18 H 1.08006 * 119.99890 * 22.84819 * 17 16 15 19 19 C 1.38807 * 120.00518 * 202.84951 * 17 16 15 20 20 N 1.31618 * 120.00068 * 213.39814 * 19 17 16 21 21 Si 1.86808 * 119.99937 * 33.39200 * 19 17 16 22 22 H 1.48497 * 109.47231 * 270.00253 * 21 19 17 23 23 H 1.48500 * 109.46746 * 30.00476 * 21 19 17 24 24 H 1.48496 * 109.46800 * 150.00348 * 21 19 17 25 25 C 1.46930 * 118.71709 * 53.92848 * 16 15 14 26 26 C 1.52988 * 109.54981 * 182.22227 * 13 12 11 27 27 C 1.47151 * 120.98933 * 175.79498 * 9 7 2 28 28 H 1.09003 * 109.46807 * 306.45908 * 1 2 3 29 29 H 1.08996 * 109.47327 * 66.45920 * 1 2 3 30 30 H 1.09007 * 109.47099 * 186.46720 * 1 2 3 31 31 H 1.08992 * 109.47484 * 184.35178 * 3 2 1 32 32 H 1.09002 * 109.46821 * 304.34980 * 3 2 1 33 33 H 1.09001 * 109.47202 * 64.34724 * 3 2 1 34 34 H 0.96998 * 120.00095 * 359.97438 * 5 4 2 35 35 H 0.97000 * 120.00281 * 180.02562 * 5 4 2 36 36 H 1.09004 * 109.68294 * 249.11073 * 10 9 7 37 37 H 1.09008 * 109.67899 * 9.66412 * 10 9 7 38 38 H 1.09000 * 109.51111 * 172.27561 * 11 10 9 39 39 H 1.09002 * 109.51761 * 292.37831 * 11 10 9 40 40 H 1.08991 * 109.49261 * 180.99779 * 14 13 12 41 41 H 1.09002 * 109.51087 * 60.92775 * 14 13 12 42 42 H 1.08998 * 109.58088 * 185.64246 * 15 14 13 43 43 H 1.08999 * 109.70385 * 65.28538 * 15 14 13 44 44 H 0.97004 * 120.00247 * 354.92542 * 20 19 17 45 45 H 1.09006 * 109.58886 * 65.85004 * 25 16 15 46 46 H 1.09000 * 109.58878 * 186.27846 * 25 16 15 47 47 H 1.08997 * 109.49647 * 178.99983 * 26 13 12 48 48 H 1.09005 * 109.49719 * 299.05499 * 26 13 12 49 49 H 1.09000 * 109.67500 * 110.76966 * 27 9 7 50 50 H 1.08991 * 109.67932 * 350.22732 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7104 -1.2304 5 7 1.7067 -0.2500 -2.4546 6 8 2.7295 -1.6965 -1.1193 7 6 2.0324 -0.7104 1.2304 8 8 2.6570 -0.0989 2.0711 9 7 1.7877 -2.0253 1.3966 10 6 0.9554 -2.7682 0.4369 11 6 1.7163 -4.0295 0.0125 12 8 2.1303 -4.7446 1.1793 13 6 3.0360 -4.0241 2.0174 14 6 4.2747 -3.6280 1.2116 15 6 4.9485 -4.8900 0.6635 16 7 5.2214 -5.8037 1.7813 17 6 6.4824 -6.2958 1.9885 18 1 7.3394 -5.7665 1.5989 19 6 6.6592 -7.4750 2.6993 20 7 7.7252 -7.6344 3.4547 21 14 5.3843 -8.8354 2.5836 22 1 4.3586 -8.6437 3.6402 23 1 4.7344 -8.7925 1.2491 24 1 6.0466 -10.1514 2.7697 25 6 4.1139 -6.1842 2.6687 26 6 3.4506 -4.9037 3.1984 27 6 2.3452 -2.7608 2.5427 28 1 -0.3633 0.6107 0.8266 29 1 -0.3634 0.4104 -0.9421 30 1 -0.3634 -1.0212 0.1158 31 1 3.1272 1.4434 -0.0780 32 1 1.6145 1.9782 -0.8485 33 1 1.7417 1.9333 0.9264 34 1 1.1487 0.5385 -2.5436 35 1 2.0296 -0.7074 -3.2466 36 1 0.0133 -3.0487 0.9080 37 1 0.7588 -2.1466 -0.4367 38 1 1.0646 -4.6623 -0.5901 39 1 2.5918 -3.7473 -0.5722 40 1 4.9725 -3.0940 1.8564 41 1 3.9795 -2.9843 0.3830 42 1 5.8846 -4.6212 0.1743 43 1 4.2880 -5.3772 -0.0538 44 1 8.4226 -6.9603 3.4580 45 1 3.3851 -6.7731 2.1117 46 1 4.4991 -6.7701 3.5033 47 1 4.1551 -4.3597 3.8275 48 1 2.5691 -5.1670 3.7831 49 1 1.5427 -3.0386 3.2260 50 1 3.0705 -2.1351 3.0626 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000949118326.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:29:14 Heat of formation + Delta-G solvation = -101.619239 kcal Electronic energy + Delta-G solvation = -33180.031053 eV Core-core repulsion = 29014.547821 eV Total energy + Delta-G solvation = -4165.483232 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -42.54983 -40.94302 -39.62454 -38.01786 -36.01141 -35.82935 -34.81250 -34.06102 -33.07082 -31.95325 -30.17712 -28.72142 -28.17161 -25.90168 -24.94525 -24.91712 -24.01261 -23.05932 -21.85952 -20.48541 -20.10155 -19.42713 -19.10464 -17.92097 -17.46861 -17.23875 -17.06473 -16.61041 -16.26363 -16.13973 -16.02534 -15.79522 -15.67624 -15.28628 -15.10718 -15.03723 -14.94341 -14.22730 -13.95589 -13.69594 -13.63756 -13.44831 -13.38901 -13.26895 -13.14124 -13.05384 -12.83126 -12.81461 -12.40304 -12.25700 -12.13997 -11.92501 -11.79475 -11.61091 -11.57600 -11.29859 -10.95151 -10.84437 -10.76727 -10.58515 -10.43267 -9.54225 -9.15642 -8.56486 -5.43075 1.33493 1.42350 1.49999 1.55208 1.75946 1.81199 2.50954 2.51002 2.73585 2.99913 3.14899 3.38003 3.64076 3.69832 3.76122 3.76767 3.81544 3.91512 4.02259 4.13103 4.26928 4.31684 4.38352 4.48621 4.57431 4.58749 4.61638 4.64161 4.68043 4.71651 4.73038 4.77756 4.80990 4.88229 4.95321 5.02924 5.06852 5.14191 5.18023 5.18737 5.28995 5.38881 5.74607 5.90774 6.22415 6.26326 6.28735 6.38118 6.89937 6.98986 7.29442 7.59265 8.11501 8.79595 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.022333 B = 0.003505 C = 0.003492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.441631 B = 7985.990086 C = 8017.398881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.100 4.100 3 C -0.124 4.124 4 C 0.523 3.477 5 N -0.822 5.822 6 O -0.563 6.563 7 C 0.529 3.471 8 O -0.580 6.580 9 N -0.593 5.593 10 C 0.083 3.917 11 C 0.035 3.965 12 O -0.376 6.376 13 C 0.128 3.872 14 C -0.144 4.144 15 C 0.158 3.842 16 N -0.616 5.616 17 C -0.348 4.348 18 H 0.027 0.973 19 C -0.061 4.061 20 N -0.940 5.940 21 Si 1.096 2.904 22 H -0.264 1.264 23 H -0.278 1.278 24 H -0.299 1.299 25 C 0.137 3.863 26 C -0.116 4.116 27 C 0.097 3.903 28 H 0.081 0.919 29 H 0.112 0.888 30 H 0.075 0.925 31 H 0.041 0.959 32 H 0.110 0.890 33 H 0.071 0.929 34 H 0.419 0.581 35 H 0.413 0.587 36 H 0.093 0.907 37 H 0.111 0.889 38 H 0.119 0.881 39 H 0.062 0.938 40 H 0.038 0.962 41 H 0.085 0.915 42 H 0.032 0.968 43 H 0.029 0.971 44 H 0.248 0.752 45 H 0.039 0.961 46 H 0.054 0.946 47 H 0.065 0.935 48 H 0.094 0.906 49 H 0.093 0.907 50 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.370 19.669 -13.371 34.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.106 4.106 3 C -0.182 4.182 4 C 0.306 3.694 5 N -0.388 5.388 6 O -0.441 6.441 7 C 0.317 3.683 8 O -0.460 6.460 9 N -0.324 5.324 10 C -0.039 4.039 11 C -0.042 4.042 12 O -0.295 6.295 13 C 0.088 3.912 14 C -0.183 4.183 15 C 0.033 3.967 16 N -0.341 5.341 17 C -0.477 4.477 18 H 0.044 0.956 19 C -0.258 4.258 20 N -0.581 5.581 21 Si 0.921 3.079 22 H -0.190 1.190 23 H -0.204 1.204 24 H -0.226 1.226 25 C 0.013 3.987 26 C -0.155 4.155 27 C -0.026 4.026 28 H 0.100 0.900 29 H 0.130 0.870 30 H 0.094 0.906 31 H 0.060 0.940 32 H 0.129 0.871 33 H 0.090 0.910 34 H 0.251 0.749 35 H 0.246 0.754 36 H 0.111 0.889 37 H 0.129 0.871 38 H 0.137 0.863 39 H 0.080 0.920 40 H 0.057 0.943 41 H 0.103 0.897 42 H 0.051 0.949 43 H 0.047 0.953 44 H 0.058 0.942 45 H 0.057 0.943 46 H 0.072 0.928 47 H 0.083 0.917 48 H 0.113 0.887 49 H 0.111 0.889 50 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -25.071 17.744 -12.089 33.009 hybrid contribution 1.705 1.880 -0.843 2.675 sum -23.366 19.624 -12.932 33.141 Atomic orbital electron populations 1.22212 0.87282 1.04822 1.06302 1.21127 1.01346 0.98082 0.90089 1.21705 1.00877 0.90690 1.04931 1.20148 0.79801 0.83557 0.85867 1.43565 1.54875 1.33840 1.06503 1.90842 1.38805 1.27406 1.87096 1.20602 0.78533 0.81584 0.87571 1.90679 1.42632 1.66410 1.46230 1.47933 1.50366 1.08258 1.25821 1.22763 0.93639 0.93968 0.93509 1.23206 0.99720 0.93496 0.87789 1.87953 1.63084 1.42537 1.35915 1.21427 0.88054 0.90840 0.90869 1.22371 0.97063 0.98214 1.00632 1.20774 0.96616 0.89947 0.89370 1.44468 1.05914 1.54070 1.29650 1.20004 0.84065 1.05789 1.37865 0.95552 1.27200 1.03590 1.00001 0.94971 1.71056 1.12442 1.40923 1.33689 0.83370 0.73628 0.73440 0.77473 1.18956 1.20416 1.22619 1.21293 0.88920 0.95539 0.92993 1.21998 1.00712 0.97004 0.95781 1.22191 0.99052 0.92574 0.88793 0.90048 0.86970 0.90601 0.94026 0.87113 0.90994 0.74860 0.75418 0.88912 0.87115 0.86339 0.92029 0.94350 0.89689 0.94890 0.95325 0.94229 0.94340 0.92770 0.91667 0.88709 0.88902 0.90558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 8.11 71.98 0.58 -0.43 16 2 C -0.10 -1.53 0.60 -53.68 -0.03 -1.56 16 3 C -0.12 -1.64 7.71 71.98 0.56 -1.09 16 4 C 0.52 8.16 5.02 87.66 0.44 8.60 16 5 N -0.82 -4.33 8.63 -173.53 -1.50 -5.82 16 6 O -0.56 -14.29 11.20 -3.03 -0.03 -14.32 16 7 C 0.53 14.09 6.06 87.66 0.53 14.62 16 8 O -0.58 -20.24 15.39 -3.04 -0.05 -20.29 16 9 N -0.59 -15.43 2.21 -817.42 -1.81 -17.24 16 10 C 0.08 1.64 4.00 86.35 0.35 1.99 16 11 C 0.03 0.89 6.32 72.08 0.46 1.35 16 12 O -0.38 -12.40 9.00 -148.98 -1.34 -13.74 16 13 C 0.13 4.53 0.68 -10.72 -0.01 4.52 16 14 C -0.14 -5.88 4.33 30.66 0.13 -5.75 16 15 C 0.16 7.46 6.28 86.37 0.54 8.00 16 16 N -0.62 -32.77 2.79 -698.21 -1.95 -34.72 16 17 C -0.35 -21.57 9.81 84.03 0.82 -20.74 16 18 H 0.03 1.79 8.03 -2.91 -0.02 1.77 16 19 C -0.06 -3.79 4.97 84.86 0.42 -3.37 16 20 N -0.94 -61.99 13.70 21.65 0.30 -61.69 16 21 Si 1.10 55.72 25.45 68.60 1.75 57.46 16 22 H -0.26 -12.14 6.49 99.48 0.65 -11.50 16 23 H -0.28 -13.65 7.11 99.48 0.71 -12.95 16 24 H -0.30 -15.11 7.11 99.48 0.71 -14.41 16 25 C 0.14 6.42 4.14 86.51 0.36 6.78 16 26 C -0.12 -4.43 5.12 30.80 0.16 -4.27 16 27 C 0.10 2.96 5.28 86.34 0.46 3.42 16 28 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.11 -0.10 7.39 -2.39 -0.02 -0.11 16 30 H 0.08 0.56 5.15 -2.38 -0.01 0.54 16 31 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.11 0.41 7.69 -2.39 -0.02 0.40 16 33 H 0.07 1.09 7.91 -2.39 -0.02 1.07 16 34 H 0.42 -0.84 7.68 -92.71 -0.71 -1.56 16 35 H 0.41 1.80 8.93 -92.71 -0.83 0.98 16 36 H 0.09 1.44 8.12 -2.39 -0.02 1.42 16 37 H 0.11 1.66 3.26 -2.38 -0.01 1.66 16 38 H 0.12 2.40 8.14 -2.39 -0.02 2.38 16 39 H 0.06 1.90 4.49 -2.39 -0.01 1.89 16 40 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 41 H 0.08 3.36 4.74 -2.39 -0.01 3.35 16 42 H 0.03 1.63 7.91 -2.39 -0.02 1.61 16 43 H 0.03 1.32 7.83 -2.39 -0.02 1.30 16 44 H 0.25 16.58 8.73 -92.71 -0.81 15.77 16 45 H 0.04 1.75 7.33 -2.38 -0.02 1.73 16 46 H 0.05 2.72 4.71 -2.39 -0.01 2.71 16 47 H 0.06 2.64 8.14 -2.39 -0.02 2.62 16 48 H 0.09 3.01 8.14 -2.38 -0.02 2.99 16 49 H 0.09 2.44 8.14 -2.39 -0.02 2.42 16 50 H 0.08 2.67 7.11 -2.39 -0.02 2.65 16 Total: -1.00 -87.04 361.48 0.48 -86.56 By element: Atomic # 1 Polarization: 12.38 SS G_CDS: -0.65 Total: 11.73 kcal Atomic # 6 Polarization: 6.30 SS G_CDS: 5.76 Total: 12.07 kcal Atomic # 7 Polarization: -114.51 SS G_CDS: -4.96 Total: -119.47 kcal Atomic # 8 Polarization: -46.93 SS G_CDS: -1.42 Total: -48.35 kcal Atomic # 14 Polarization: 55.72 SS G_CDS: 1.75 Total: 57.46 kcal Total: -87.04 0.48 -86.56 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000949118326.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.061 kcal (2) G-P(sol) polarization free energy of solvation -87.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds