Wall clock time and date at job start Tue Mar 31 2020 23:29:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46722 * 2 1 4 4 C 1.50697 * 109.47101 * 239.99985 * 2 1 3 5 5 N 1.34777 * 120.00335 * 60.00260 * 4 2 1 6 6 O 1.21287 * 119.99672 * 239.99275 * 4 2 1 7 7 C 1.50700 * 109.47090 * 119.99951 * 2 1 3 8 8 O 1.21281 * 119.99736 * 236.00081 * 7 2 1 9 9 N 1.34775 * 120.00126 * 56.26866 * 7 2 1 10 10 C 1.46924 * 120.64161 * 4.78100 * 9 7 2 11 11 C 1.53630 * 108.53730 * 126.29141 * 10 9 7 12 12 C 1.52997 * 109.27380 * 54.81020 * 11 10 9 13 13 C 1.52987 * 109.62823 * 298.65516 * 12 11 10 14 14 C 1.46936 * 120.64310 * 185.05597 * 9 7 2 15 15 C 1.53252 * 109.36292 * 178.71782 * 12 11 10 16 16 N 1.47154 * 108.41274 * 187.91252 * 15 12 11 17 17 C 1.36929 * 120.98767 * 230.49364 * 16 15 12 18 18 H 1.08005 * 120.00259 * 150.03849 * 17 16 15 19 19 C 1.38812 * 120.00283 * 330.04068 * 17 16 15 20 20 N 1.31628 * 119.99748 * 347.10609 * 19 17 16 21 21 Si 1.86799 * 120.00549 * 167.11024 * 19 17 16 22 22 H 1.48500 * 109.46872 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.47323 * 119.99855 * 21 19 17 24 24 H 1.48497 * 109.47253 * 240.00213 * 21 19 17 25 25 C 1.47153 * 118.02297 * 50.46981 * 16 15 12 26 26 C 1.53300 * 108.37302 * 309.40677 * 25 16 15 27 27 O 1.42896 * 109.54985 * 58.91261 * 12 11 10 28 28 H 1.08996 * 109.47406 * 306.19593 * 1 2 3 29 29 H 1.09002 * 109.47248 * 66.20247 * 1 2 3 30 30 H 1.09008 * 109.46785 * 186.19975 * 1 2 3 31 31 H 1.09000 * 109.46881 * 176.73996 * 3 2 1 32 32 H 1.08994 * 109.46852 * 296.73696 * 3 2 1 33 33 H 1.09001 * 109.46859 * 56.74185 * 3 2 1 34 34 H 0.96998 * 119.99688 * 359.97438 * 5 4 2 35 35 H 0.96994 * 120.00132 * 179.97438 * 5 4 2 36 36 H 1.09002 * 109.58949 * 246.12138 * 10 9 7 37 37 H 1.09000 * 109.59031 * 6.55586 * 10 9 7 38 38 H 1.09002 * 109.62965 * 294.80495 * 11 10 9 39 39 H 1.08998 * 109.44764 * 174.69507 * 11 10 9 40 40 H 1.08995 * 109.49532 * 301.24773 * 13 12 11 41 41 H 1.09005 * 109.51245 * 181.18168 * 13 12 11 42 42 H 1.09000 * 109.58774 * 353.44064 * 14 9 7 43 43 H 1.08996 * 109.58757 * 113.72316 * 14 9 7 44 44 H 1.09006 * 109.67304 * 307.64048 * 15 12 11 45 45 H 1.08999 * 109.68274 * 68.17695 * 15 12 11 46 46 H 0.97002 * 119.99853 * 179.97438 * 20 19 17 47 47 H 1.08994 * 109.68852 * 69.13185 * 25 16 15 48 48 H 1.09008 * 109.68135 * 189.69043 * 25 16 15 49 49 H 1.09003 * 109.51019 * 172.27781 * 26 25 16 50 50 H 1.09001 * 109.51306 * 292.37839 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0323 -0.7104 -1.2304 5 7 1.7068 -0.2500 -2.4546 6 8 2.7297 -1.6964 -1.1191 7 6 2.0323 -0.7104 1.2305 8 8 2.7882 -0.1442 1.9914 9 7 1.6459 -1.9767 1.4825 10 6 0.8204 -2.7141 0.5163 11 6 1.5168 -4.0451 0.1943 12 6 1.7872 -4.8015 1.4964 13 6 2.7153 -3.9745 2.3880 14 6 2.0370 -2.6446 2.7315 15 6 2.4530 -6.1440 1.1753 16 7 2.5297 -6.9330 2.4150 17 6 3.7072 -7.5074 2.8133 18 1 3.9100 -7.6502 3.8645 19 6 4.6403 -7.9062 1.8661 20 7 4.3020 -7.9711 0.5957 21 14 6.3761 -8.3507 2.3942 22 1 6.5006 -8.1959 3.8659 23 1 6.6627 -9.7584 2.0181 24 1 7.3449 -7.4507 1.7186 25 6 1.3037 -7.0861 3.2142 26 6 0.6962 -5.6965 3.4380 27 8 0.5533 -5.0366 2.1778 28 1 -0.3634 0.6068 0.8293 29 1 -0.3634 0.4147 -0.9403 30 1 -0.3633 -1.0217 0.1110 31 1 3.1283 1.4431 0.0584 32 1 1.7251 1.9391 -0.9177 33 1 1.6296 1.9729 0.8594 34 1 1.1489 0.5385 -2.5436 35 1 2.0304 -0.7070 -3.2465 36 1 -0.1619 -2.9074 0.9473 37 1 0.7125 -2.1267 -0.3955 38 1 2.4602 -3.8507 -0.3161 39 1 0.8728 -4.6455 -0.4481 40 1 3.6492 -3.7808 1.8604 41 1 2.9235 -4.5242 3.3060 42 1 2.7324 -2.0112 3.2823 43 1 1.1515 -2.8299 3.3395 44 1 1.8592 -6.6803 0.4350 45 1 3.4568 -5.9723 0.7867 46 1 4.9541 -8.2494 -0.0662 47 1 0.5928 -7.7157 2.6792 48 1 1.5461 -7.5399 4.1752 49 1 -0.2817 -5.7981 3.9086 50 1 1.3519 -5.1121 4.0836 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000949388886.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:29:05 Heat of formation + Delta-G solvation = -105.406724 kcal Electronic energy + Delta-G solvation = -32991.076892 eV Core-core repulsion = 28825.429423 eV Total energy + Delta-G solvation = -4165.647470 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.39336 -40.91068 -39.66574 -37.54029 -36.17699 -36.00817 -34.25741 -33.60380 -33.20245 -32.09907 -29.82688 -28.40518 -28.27831 -25.99740 -25.04165 -24.75405 -24.16282 -22.93373 -21.74798 -20.46420 -19.95299 -19.03195 -18.81708 -17.81478 -17.47665 -17.20686 -16.65019 -16.53718 -16.30236 -16.08073 -15.84597 -15.78396 -15.43623 -15.25992 -15.03932 -14.88982 -14.62295 -14.25363 -13.82772 -13.65452 -13.43530 -13.39621 -13.24457 -13.16240 -13.04173 -12.91606 -12.82436 -12.71029 -12.42368 -12.33814 -12.23836 -12.09232 -12.06901 -11.72775 -11.65225 -11.10760 -10.92722 -10.76788 -10.67892 -10.63844 -10.46826 -9.63356 -8.66969 -7.91293 -5.42608 1.39356 1.39823 1.42264 1.51883 1.52974 1.96595 2.43720 2.56510 2.89127 3.20377 3.24414 3.51896 3.71051 3.80981 3.82919 3.90426 3.97585 4.03602 4.11461 4.27988 4.32459 4.45333 4.47157 4.54330 4.65398 4.66731 4.68934 4.72527 4.77226 4.80761 4.81415 4.89322 4.94352 4.99927 5.07308 5.12859 5.18737 5.24233 5.27543 5.35741 5.49492 5.55099 5.59767 5.89950 6.30418 6.36591 6.42386 6.42898 7.06447 7.06497 7.30741 7.75114 8.30318 9.13505 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.015691 B = 0.003800 C = 0.003545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1784.044912 B = 7367.036664 C = 7896.671745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.101 4.101 3 C -0.122 4.122 4 C 0.522 3.478 5 N -0.823 5.823 6 O -0.571 6.571 7 C 0.528 3.472 8 O -0.582 6.582 9 N -0.592 5.592 10 C 0.128 3.872 11 C -0.109 4.109 12 C 0.111 3.889 13 C -0.132 4.132 14 C 0.126 3.874 15 C 0.173 3.827 16 N -0.610 5.610 17 C -0.261 4.261 18 H 0.070 0.930 19 C -0.048 4.048 20 N -0.935 5.935 21 Si 0.964 3.036 22 H -0.263 1.263 23 H -0.288 1.288 24 H -0.295 1.295 25 C 0.105 3.895 26 C 0.051 3.949 27 O -0.377 6.377 28 H 0.085 0.915 29 H 0.111 0.889 30 H 0.074 0.926 31 H 0.042 0.958 32 H 0.107 0.893 33 H 0.077 0.923 34 H 0.420 0.580 35 H 0.412 0.588 36 H 0.090 0.910 37 H 0.101 0.899 38 H 0.066 0.934 39 H 0.078 0.922 40 H 0.038 0.962 41 H 0.073 0.927 42 H 0.075 0.925 43 H 0.086 0.914 44 H -0.005 1.005 45 H 0.049 0.951 46 H 0.249 0.751 47 H 0.016 0.984 48 H 0.069 0.931 49 H 0.121 0.879 50 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.085 20.567 -4.717 25.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.107 4.107 3 C -0.180 4.180 4 C 0.306 3.694 5 N -0.389 5.389 6 O -0.449 6.449 7 C 0.317 3.683 8 O -0.463 6.463 9 N -0.322 5.322 10 C 0.006 3.994 11 C -0.147 4.147 12 C 0.070 3.930 13 C -0.170 4.170 14 C 0.004 3.996 15 C 0.047 3.953 16 N -0.335 5.335 17 C -0.391 4.391 18 H 0.088 0.912 19 C -0.244 4.244 20 N -0.581 5.581 21 Si 0.792 3.208 22 H -0.187 1.187 23 H -0.215 1.215 24 H -0.222 1.222 25 C -0.021 4.021 26 C -0.027 4.027 27 O -0.296 6.296 28 H 0.104 0.896 29 H 0.129 0.871 30 H 0.093 0.907 31 H 0.061 0.939 32 H 0.126 0.874 33 H 0.096 0.904 34 H 0.253 0.747 35 H 0.245 0.755 36 H 0.108 0.892 37 H 0.118 0.882 38 H 0.084 0.916 39 H 0.096 0.904 40 H 0.057 0.943 41 H 0.092 0.908 42 H 0.093 0.907 43 H 0.105 0.895 44 H 0.013 0.987 45 H 0.068 0.932 46 H 0.058 0.942 47 H 0.034 0.966 48 H 0.087 0.913 49 H 0.139 0.861 50 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -13.357 20.239 -4.245 24.618 hybrid contribution 1.780 -1.058 -0.243 2.085 sum -11.578 19.181 -4.488 22.849 Atomic orbital electron populations 1.22310 0.87450 1.05006 1.06353 1.21148 1.01275 0.98296 0.89986 1.21703 1.01030 0.90224 1.05025 1.20250 0.79615 0.83486 0.86062 1.43551 1.54967 1.33917 1.06456 1.90905 1.39056 1.27716 1.87252 1.20577 0.79453 0.81357 0.86945 1.90640 1.36882 1.67316 1.51420 1.47977 1.51653 1.12625 1.19967 1.22023 0.93436 0.91428 0.92536 1.21823 1.01861 0.96036 0.95011 1.21834 0.84589 0.94269 0.92309 1.22097 0.98038 0.95966 1.00941 1.21435 0.99970 0.92176 0.86041 1.21048 0.98127 0.88672 0.87452 1.44264 1.05797 1.58450 1.24942 1.19522 0.94416 1.33285 0.91878 0.91241 1.25877 1.03045 0.99601 0.95828 1.70167 1.34343 1.52201 1.01418 0.85250 0.80197 0.77045 0.78289 1.18720 1.21476 1.22189 1.21801 0.88186 0.96426 0.95660 1.23089 1.01929 0.92257 0.85388 1.87765 1.29204 1.78545 1.34068 0.89609 0.87071 0.90710 0.93916 0.87419 0.90369 0.74731 0.75544 0.89230 0.88165 0.91564 0.90365 0.94312 0.90804 0.90666 0.89541 0.98746 0.93249 0.94184 0.96595 0.91284 0.86130 0.93070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 8.08 71.98 0.58 -1.09 16 2 C -0.10 -1.94 0.60 -53.67 -0.03 -1.97 16 3 C -0.12 -1.88 7.75 71.98 0.56 -1.32 16 4 C 0.52 10.98 5.08 87.66 0.44 11.42 16 5 N -0.82 -8.10 8.60 -173.53 -1.49 -9.59 16 6 O -0.57 -18.70 13.57 -3.05 -0.04 -18.74 16 7 C 0.53 16.18 5.92 87.66 0.52 16.69 16 8 O -0.58 -21.95 15.34 -3.03 -0.05 -21.99 16 9 N -0.59 -18.35 2.83 -818.04 -2.32 -20.67 16 10 C 0.13 3.51 3.43 86.51 0.30 3.81 16 11 C -0.11 -3.91 4.92 30.81 0.15 -3.75 16 12 C 0.11 4.49 0.68 -10.71 -0.01 4.49 16 13 C -0.13 -5.32 4.33 30.65 0.13 -5.19 16 14 C 0.13 4.26 6.20 86.36 0.54 4.79 16 15 C 0.17 8.93 4.05 86.34 0.35 9.27 16 16 N -0.61 -31.76 2.54 -697.60 -1.77 -33.53 16 17 C -0.26 -14.77 9.63 84.03 0.81 -13.96 16 18 H 0.07 3.80 7.86 -2.91 -0.02 3.78 16 19 C -0.05 -2.78 5.02 84.86 0.43 -2.36 16 20 N -0.94 -57.78 11.17 21.65 0.24 -57.54 16 21 Si 0.96 46.82 29.57 68.60 2.03 48.85 16 22 H -0.26 -12.04 7.11 99.48 0.71 -11.33 16 23 H -0.29 -13.82 7.11 99.48 0.71 -13.12 16 24 H -0.29 -14.52 7.11 99.48 0.71 -13.81 16 25 C 0.10 4.40 6.73 86.36 0.58 4.98 16 26 C 0.05 1.72 6.60 72.08 0.48 2.19 16 27 O -0.38 -13.76 9.00 -148.98 -1.34 -15.10 16 28 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.11 0.33 7.40 -2.39 -0.02 0.31 16 30 H 0.07 0.97 4.68 -2.38 -0.01 0.96 16 31 H 0.04 0.91 7.96 -2.39 -0.02 0.89 16 32 H 0.11 0.67 7.47 -2.39 -0.02 0.65 16 33 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.42 0.70 7.56 -92.71 -0.70 0.00 16 35 H 0.41 3.73 8.93 -92.71 -0.83 2.90 16 36 H 0.09 2.18 7.67 -2.39 -0.02 2.16 16 37 H 0.10 2.31 3.25 -2.39 -0.01 2.30 16 38 H 0.07 2.76 6.72 -2.39 -0.02 2.74 16 39 H 0.08 2.69 8.14 -2.39 -0.02 2.67 16 40 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 41 H 0.07 3.14 6.16 -2.38 -0.01 3.12 16 42 H 0.07 2.69 7.00 -2.39 -0.02 2.67 16 43 H 0.09 2.58 7.83 -2.39 -0.02 2.56 16 44 H -0.01 -0.31 8.14 -2.38 -0.02 -0.33 16 45 H 0.05 2.93 6.30 -2.39 -0.02 2.91 16 46 H 0.25 14.92 8.31 -92.71 -0.77 14.15 16 47 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 48 H 0.07 2.73 7.96 -2.38 -0.02 2.71 16 49 H 0.12 3.13 8.14 -2.39 -0.02 3.11 16 50 H 0.05 1.71 6.29 -2.39 -0.02 1.70 16 Total: -1.00 -82.71 369.29 0.54 -82.17 By element: Atomic # 1 Polarization: 18.66 SS G_CDS: -0.54 Total: 18.11 kcal Atomic # 6 Polarization: 22.20 SS G_CDS: 5.82 Total: 28.02 kcal Atomic # 7 Polarization: -115.99 SS G_CDS: -5.34 Total: -121.33 kcal Atomic # 8 Polarization: -54.40 SS G_CDS: -1.43 Total: -55.83 kcal Atomic # 14 Polarization: 46.82 SS G_CDS: 2.03 Total: 48.85 kcal Total: -82.71 0.54 -82.17 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000949388886.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.232 kcal (2) G-P(sol) polarization free energy of solvation -82.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds