Wall clock time and date at job start Tue Mar 31 2020 23:39:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53004 * 109.47114 * 2 1 4 4 H 1.09000 * 109.49873 * 55.06420 * 3 2 1 5 5 C 1.53190 * 109.49804 * 294.99789 * 3 2 1 6 6 N 1.46923 * 108.77949 * 185.41373 * 5 3 2 7 7 C 1.34772 * 120.63076 * 233.58659 * 6 5 3 8 8 O 1.21284 * 120.00239 * 0.02562 * 7 6 5 9 9 C 1.50700 * 119.99851 * 179.97438 * 7 6 5 10 10 N 1.46505 * 109.47422 * 180.02562 * 9 7 6 11 11 C 1.46076 * 118.71508 * 270.24949 * 10 9 7 12 12 C 1.53019 * 109.99071 * 161.87499 * 11 10 9 13 13 O 1.43239 * 108.66909 * 48.93979 * 12 11 10 14 14 C 1.42975 * 112.98993 * 291.64050 * 13 12 11 15 15 C 1.33864 * 118.73076 * 89.99610 * 10 9 7 16 16 O 1.21283 * 118.83714 * 1.86926 * 15 10 9 17 17 C 1.46925 * 118.73708 * 53.85933 * 6 5 3 18 18 C 1.53625 * 108.54288 * 306.09619 * 17 6 5 19 19 C 1.53039 * 109.49780 * 175.16301 * 3 2 1 20 20 H 1.08999 * 109.46553 * 61.30705 * 19 3 2 21 21 N 1.46501 * 109.45747 * 301.33488 * 19 3 2 22 22 C 1.36939 * 120.00089 * 155.00077 * 21 19 3 23 23 H 1.08008 * 119.99687 * 0.02562 * 22 21 19 24 24 C 1.38809 * 120.00272 * 179.97438 * 22 21 19 25 25 N 1.31612 * 120.00048 * 0.02562 * 24 22 21 26 26 Si 1.86804 * 120.00004 * 180.02562 * 24 22 21 27 27 H 1.48492 * 109.47415 * 60.00109 * 26 24 22 28 28 H 1.48500 * 109.47015 * 179.97438 * 26 24 22 29 29 H 1.48497 * 109.46956 * 299.99862 * 26 24 22 30 30 H 1.09003 * 109.47476 * 300.00086 * 1 2 3 31 31 H 1.08999 * 109.47396 * 60.00340 * 1 2 3 32 32 H 1.09007 * 109.47185 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.47476 * 239.99914 * 2 1 3 34 34 H 1.08999 * 109.47396 * 119.99660 * 2 1 3 35 35 H 1.08996 * 109.58453 * 65.62357 * 5 3 2 36 36 H 1.09003 * 109.70516 * 305.27247 * 5 3 2 37 37 H 1.08996 * 109.47497 * 59.99992 * 9 7 6 38 38 H 1.09001 * 109.47462 * 300.00243 * 9 7 6 39 39 H 1.09008 * 109.54531 * 41.60090 * 11 10 9 40 40 H 1.09003 * 109.18349 * 281.92454 * 11 10 9 41 41 H 1.09002 * 109.60059 * 289.18730 * 12 11 10 42 42 H 1.08995 * 109.73999 * 168.77593 * 12 11 10 43 43 H 1.08997 * 109.41173 * 289.49559 * 14 13 12 44 44 H 1.08998 * 109.36198 * 169.66521 * 14 13 12 45 45 H 1.08996 * 109.58994 * 65.92896 * 17 6 5 46 46 H 1.08999 * 109.58698 * 186.35780 * 17 6 5 47 47 H 1.08995 * 109.63857 * 294.86598 * 18 17 6 48 48 H 1.09003 * 109.46047 * 174.73647 * 18 17 6 49 49 H 0.97004 * 120.00531 * 335.00135 * 21 19 3 50 50 H 0.97000 * 120.00240 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6065 1.9817 0.8423 5 6 1.6350 2.1280 -1.3088 6 7 2.2415 3.4656 -1.3494 7 6 1.4816 4.5578 -1.5639 8 8 0.2851 4.4421 -1.7251 9 6 2.1184 5.9231 -1.6022 10 7 1.0885 6.9358 -1.8475 11 6 0.7735 7.2965 -3.2275 12 6 -0.5853 7.9975 -3.2879 13 8 -0.6152 9.0261 -2.2915 14 6 -0.6235 8.5114 -0.9576 15 6 0.4691 7.4908 -0.7986 16 8 0.8045 7.1626 0.3197 17 6 3.6929 3.5894 -1.1578 18 6 4.0740 2.8881 0.1548 19 6 3.5655 1.4450 0.1216 20 1 3.9989 0.9270 -0.7339 21 7 3.9577 0.7608 1.3563 22 6 5.1961 0.1850 1.4563 23 1 5.8838 0.2355 0.6250 24 6 5.5679 -0.4628 2.6263 25 7 4.7301 -0.5240 3.6395 26 14 7.2575 -1.2477 2.7629 27 1 8.3024 -0.2084 2.5807 28 1 7.4074 -1.8699 4.1029 29 1 7.4062 -2.2883 1.7140 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 0.5497 2.2173 -1.3539 36 1 1.9888 1.5406 -2.1561 37 1 2.8588 5.9565 -2.4014 38 1 2.6049 6.1241 -0.6477 39 1 0.7442 6.3966 -3.8420 40 1 1.5441 7.9673 -3.6072 41 1 -1.3782 7.2756 -3.0922 42 1 -0.7282 8.4393 -4.2740 43 1 -1.5875 8.0447 -0.7554 44 1 -0.4616 9.3281 -0.2542 45 1 4.2131 3.1178 -1.9916 46 1 3.9658 4.6432 -1.1032 47 1 3.6218 3.4138 0.9957 48 1 5.1584 2.8891 0.2656 49 1 3.3402 0.7157 2.1031 50 1 4.9900 -0.9763 4.4572 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037858551.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:39:41 Heat of formation + Delta-G solvation = -94.495575 kcal Electronic energy + Delta-G solvation = -31071.175055 eV Core-core repulsion = 26906.000728 eV Total energy + Delta-G solvation = -4165.174327 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.14084 -39.91332 -38.04766 -37.71719 -35.55405 -34.77308 -33.78749 -31.73509 -30.82734 -29.83448 -29.49009 -28.44168 -26.46165 -24.78450 -24.18875 -23.80606 -22.76353 -20.84708 -20.18438 -19.44273 -18.94204 -18.04252 -17.51021 -17.19897 -17.07164 -16.24931 -15.82120 -15.76401 -15.11041 -15.02853 -14.70497 -14.53696 -14.04932 -13.90400 -13.75364 -13.59117 -13.43571 -13.33697 -13.20222 -13.08847 -12.75152 -12.24311 -12.10191 -12.02357 -11.86764 -11.66977 -11.62558 -11.30508 -10.93617 -10.89050 -10.86839 -10.71500 -10.36831 -10.24123 -10.17001 -10.08943 -9.74070 -9.72847 -9.60769 -8.99995 -8.89196 -8.51050 -6.97649 -5.78131 -3.07150 2.16824 2.44285 2.59413 3.12204 3.34530 3.41683 3.46361 3.47672 3.96991 4.34695 4.42872 4.56469 4.61064 4.71435 4.83551 4.96174 4.96959 5.03158 5.16797 5.19724 5.21318 5.23852 5.32101 5.33057 5.43018 5.52648 5.59025 5.65758 5.66353 5.81951 5.87757 6.00549 6.10833 6.14322 6.30740 6.34053 6.36121 6.38259 6.44731 6.55170 6.67392 6.81668 6.94832 7.00361 7.05344 7.44514 7.66626 7.76860 8.16062 8.39863 9.51178 10.08715 10.43537 11.44196 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.018392 B = 0.002617 C = 0.002486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1522.051609 B =10694.986353 C =11261.403028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.111 4.111 3 C -0.105 4.105 4 H 0.070 0.930 5 C 0.120 3.880 6 N -0.603 5.603 7 C 0.501 3.499 8 O -0.544 6.544 9 C 0.090 3.910 10 N -0.588 5.588 11 C 0.083 3.917 12 C 0.044 3.956 13 O -0.372 6.372 14 C 0.053 3.947 15 C 0.492 3.508 16 O -0.534 6.534 17 C 0.105 3.895 18 C -0.153 4.153 19 C 0.185 3.815 20 H 0.048 0.952 21 N -0.720 5.720 22 C -0.239 4.239 23 H 0.069 0.931 24 C -0.012 4.012 25 N -0.931 5.931 26 Si 0.905 3.095 27 H -0.287 1.287 28 H -0.292 1.292 29 H -0.286 1.286 30 H 0.051 0.949 31 H 0.048 0.952 32 H 0.049 0.951 33 H 0.056 0.944 34 H 0.084 0.916 35 H 0.089 0.911 36 H 0.065 0.935 37 H 0.108 0.892 38 H 0.119 0.881 39 H 0.087 0.913 40 H 0.077 0.923 41 H 0.068 0.932 42 H 0.116 0.884 43 H 0.093 0.907 44 H 0.132 0.868 45 H 0.070 0.930 46 H 0.075 0.925 47 H 0.061 0.939 48 H 0.077 0.923 49 H 0.384 0.616 50 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.119 16.012 -17.151 25.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.149 4.149 3 C -0.125 4.125 4 H 0.088 0.912 5 C -0.002 4.002 6 N -0.337 5.337 7 C 0.287 3.713 8 O -0.422 6.422 9 C -0.036 4.036 10 N -0.321 5.321 11 C -0.040 4.040 12 C -0.033 4.033 13 O -0.290 6.290 14 C -0.027 4.027 15 C 0.280 3.720 16 O -0.410 6.410 17 C -0.018 4.018 18 C -0.194 4.194 19 C 0.074 3.926 20 H 0.066 0.934 21 N -0.360 5.360 22 C -0.371 4.371 23 H 0.087 0.913 24 C -0.208 4.208 25 N -0.579 5.579 26 Si 0.736 3.264 27 H -0.213 1.213 28 H -0.218 1.218 29 H -0.213 1.213 30 H 0.070 0.930 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.075 0.925 34 H 0.102 0.898 35 H 0.107 0.893 36 H 0.083 0.917 37 H 0.126 0.874 38 H 0.137 0.863 39 H 0.105 0.895 40 H 0.095 0.905 41 H 0.086 0.914 42 H 0.134 0.866 43 H 0.111 0.889 44 H 0.149 0.851 45 H 0.088 0.912 46 H 0.093 0.907 47 H 0.080 0.920 48 H 0.095 0.905 49 H 0.218 0.782 50 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -9.419 15.912 -16.691 24.910 hybrid contribution 0.964 -0.859 0.450 1.368 sum -8.455 15.053 -16.241 23.703 Atomic orbital electron populations 1.21841 0.96851 1.01002 1.01274 1.21446 0.94337 0.95688 1.03459 1.21782 0.97695 0.96247 0.96746 0.91199 1.21737 0.99348 0.81306 0.97811 1.48179 1.08541 1.06737 1.70206 1.20959 0.87344 0.86389 0.76570 1.90651 1.14736 1.86436 1.50368 1.21436 0.90749 0.85832 1.05585 1.47054 1.39120 1.39348 1.06592 1.22166 0.98398 1.00775 0.82621 1.22999 0.95695 0.91038 0.93563 1.88175 1.94958 1.31699 1.14143 1.22831 0.96956 0.97191 0.85673 1.20993 0.83623 0.82864 0.84555 1.90787 1.63593 1.62833 1.23810 1.21998 0.79230 1.01019 0.99541 1.22777 1.02264 0.99332 0.95023 1.20168 0.90710 0.90474 0.91240 0.93448 1.42408 1.16495 1.64385 1.12734 1.19157 0.91813 1.27494 0.98600 0.91305 1.24730 0.98117 1.01526 0.96425 1.69646 1.35318 1.48269 1.04705 0.86303 0.84173 0.79159 0.76731 1.21338 1.21757 1.21323 0.92990 0.93324 0.93156 0.92477 0.89759 0.89320 0.91690 0.87414 0.86311 0.89468 0.90464 0.91392 0.86577 0.88945 0.85079 0.91172 0.90691 0.91993 0.90483 0.78170 0.93444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.17 9.67 37.15 0.36 -1.81 16 2 C -0.11 -1.82 5.31 -26.73 -0.14 -1.96 16 3 C -0.10 -1.74 1.93 -90.50 -0.17 -1.92 16 4 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 5 C 0.12 1.75 5.32 -3.71 -0.02 1.73 16 6 N -0.60 -8.31 2.97 -172.51 -0.51 -8.83 16 7 C 0.50 7.11 7.76 -10.99 -0.09 7.02 16 8 O -0.54 -9.33 15.84 5.55 0.09 -9.24 16 9 C 0.09 1.00 4.14 -5.19 -0.02 0.97 16 10 N -0.59 -6.41 2.32 -175.79 -0.41 -6.82 16 11 C 0.08 0.60 6.62 -4.26 -0.03 0.57 16 12 C 0.04 0.29 6.90 37.17 0.26 0.54 16 13 O -0.37 -3.19 10.85 -35.23 -0.38 -3.57 16 14 C 0.05 0.48 6.98 35.84 0.25 0.73 16 15 C 0.49 6.27 7.58 -11.56 -0.09 6.18 16 16 O -0.53 -8.98 16.36 5.55 0.09 -8.89 16 17 C 0.11 1.30 6.37 -3.49 -0.02 1.27 16 18 C -0.15 -2.52 5.67 -26.39 -0.15 -2.67 16 19 C 0.18 3.44 2.19 -67.89 -0.15 3.30 16 20 H 0.05 0.90 8.08 -51.93 -0.42 0.48 16 21 N -0.72 -17.20 4.33 -53.38 -0.23 -17.43 16 22 C -0.24 -6.37 9.93 -15.06 -0.15 -6.51 16 23 H 0.07 1.77 7.83 -52.48 -0.41 1.36 16 24 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 25 N -0.93 -27.70 13.06 55.49 0.72 -26.98 16 26 Si 0.91 21.98 29.55 -169.99 -5.02 16.95 16 27 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 28 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 29 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 30 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.05 0.64 6.70 -51.93 -0.35 0.29 16 32 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.08 1.65 7.22 -51.93 -0.37 1.27 16 35 H 0.09 1.37 5.72 -51.93 -0.30 1.08 16 36 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.11 0.80 7.83 -51.93 -0.41 0.39 16 38 H 0.12 1.44 6.79 -51.93 -0.35 1.09 16 39 H 0.09 0.58 8.13 -51.92 -0.42 0.16 16 40 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.07 0.48 8.10 -51.93 -0.42 0.06 16 42 H 0.12 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.13 1.00 8.14 -51.93 -0.42 0.57 16 45 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 46 H 0.07 0.74 5.93 -51.93 -0.31 0.43 16 47 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 48 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 49 H 0.38 10.02 7.51 -40.82 -0.31 9.71 16 50 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 394.33 15.07 5.94 5.94 Total: -1.00 -34.62 394.33 -8.25 -42.87 By element: Atomic # 1 Polarization: 17.23 SS G_CDS: -8.28 Total: 8.95 kcal Atomic # 6 Polarization: 7.29 SS G_CDS: -0.26 Total: 7.03 kcal Atomic # 7 Polarization: -59.63 SS G_CDS: -0.43 Total: -60.05 kcal Atomic # 8 Polarization: -21.50 SS G_CDS: -0.20 Total: -21.70 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -34.62 -8.25 -42.87 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037858551.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.625 kcal (2) G-P(sol) polarization free energy of solvation -34.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds