Wall clock time and date at job start Tue Mar 31 2020 23:39:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53004 * 109.47114 * 2 1 4 4 H 1.09000 * 109.49873 * 55.06420 * 3 2 1 5 5 C 1.53190 * 109.49804 * 294.99789 * 3 2 1 6 6 N 1.46923 * 108.77949 * 185.41373 * 5 3 2 7 7 C 1.34772 * 120.63076 * 233.58659 * 6 5 3 8 8 O 1.21284 * 120.00239 * 0.02562 * 7 6 5 9 9 C 1.50700 * 119.99851 * 179.97438 * 7 6 5 10 10 N 1.46505 * 109.47422 * 180.02562 * 9 7 6 11 11 C 1.46076 * 118.71508 * 270.24949 * 10 9 7 12 12 C 1.53019 * 109.99071 * 161.87499 * 11 10 9 13 13 O 1.43239 * 108.66909 * 48.93979 * 12 11 10 14 14 C 1.42975 * 112.98993 * 291.64050 * 13 12 11 15 15 C 1.33864 * 118.73076 * 89.99610 * 10 9 7 16 16 O 1.21283 * 118.83714 * 1.86926 * 15 10 9 17 17 C 1.46925 * 118.73708 * 53.85933 * 6 5 3 18 18 C 1.53625 * 108.54288 * 306.09619 * 17 6 5 19 19 C 1.53039 * 109.49780 * 175.16301 * 3 2 1 20 20 H 1.08999 * 109.46553 * 61.30705 * 19 3 2 21 21 N 1.46501 * 109.45747 * 301.33488 * 19 3 2 22 22 C 1.36939 * 120.00089 * 155.00077 * 21 19 3 23 23 H 1.08008 * 119.99687 * 0.02562 * 22 21 19 24 24 C 1.38809 * 120.00272 * 179.97438 * 22 21 19 25 25 N 1.31612 * 120.00048 * 0.02562 * 24 22 21 26 26 Si 1.86804 * 120.00004 * 180.02562 * 24 22 21 27 27 H 1.48492 * 109.47415 * 60.00109 * 26 24 22 28 28 H 1.48500 * 109.47015 * 179.97438 * 26 24 22 29 29 H 1.48497 * 109.46956 * 299.99862 * 26 24 22 30 30 H 1.09003 * 109.47476 * 300.00086 * 1 2 3 31 31 H 1.08999 * 109.47396 * 60.00340 * 1 2 3 32 32 H 1.09007 * 109.47185 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.47476 * 239.99914 * 2 1 3 34 34 H 1.08999 * 109.47396 * 119.99660 * 2 1 3 35 35 H 1.08996 * 109.58453 * 65.62357 * 5 3 2 36 36 H 1.09003 * 109.70516 * 305.27247 * 5 3 2 37 37 H 1.08996 * 109.47497 * 59.99992 * 9 7 6 38 38 H 1.09001 * 109.47462 * 300.00243 * 9 7 6 39 39 H 1.09008 * 109.54531 * 41.60090 * 11 10 9 40 40 H 1.09003 * 109.18349 * 281.92454 * 11 10 9 41 41 H 1.09002 * 109.60059 * 289.18730 * 12 11 10 42 42 H 1.08995 * 109.73999 * 168.77593 * 12 11 10 43 43 H 1.08997 * 109.41173 * 289.49559 * 14 13 12 44 44 H 1.08998 * 109.36198 * 169.66521 * 14 13 12 45 45 H 1.08996 * 109.58994 * 65.92896 * 17 6 5 46 46 H 1.08999 * 109.58698 * 186.35780 * 17 6 5 47 47 H 1.08995 * 109.63857 * 294.86598 * 18 17 6 48 48 H 1.09003 * 109.46047 * 174.73647 * 18 17 6 49 49 H 0.97004 * 120.00531 * 335.00135 * 21 19 3 50 50 H 0.97000 * 120.00240 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6065 1.9817 0.8423 5 6 1.6350 2.1280 -1.3088 6 7 2.2415 3.4656 -1.3494 7 6 1.4816 4.5578 -1.5639 8 8 0.2851 4.4421 -1.7251 9 6 2.1184 5.9231 -1.6022 10 7 1.0885 6.9358 -1.8475 11 6 0.7735 7.2965 -3.2275 12 6 -0.5853 7.9975 -3.2879 13 8 -0.6152 9.0261 -2.2915 14 6 -0.6235 8.5114 -0.9576 15 6 0.4691 7.4908 -0.7986 16 8 0.8045 7.1626 0.3197 17 6 3.6929 3.5894 -1.1578 18 6 4.0740 2.8881 0.1548 19 6 3.5655 1.4450 0.1216 20 1 3.9989 0.9270 -0.7339 21 7 3.9577 0.7608 1.3563 22 6 5.1961 0.1850 1.4563 23 1 5.8838 0.2355 0.6250 24 6 5.5679 -0.4628 2.6263 25 7 4.7301 -0.5240 3.6395 26 14 7.2575 -1.2477 2.7629 27 1 8.3024 -0.2084 2.5807 28 1 7.4074 -1.8699 4.1029 29 1 7.4062 -2.2883 1.7140 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 0.5497 2.2173 -1.3539 36 1 1.9888 1.5406 -2.1561 37 1 2.8588 5.9565 -2.4014 38 1 2.6049 6.1241 -0.6477 39 1 0.7442 6.3966 -3.8420 40 1 1.5441 7.9673 -3.6072 41 1 -1.3782 7.2756 -3.0922 42 1 -0.7282 8.4393 -4.2740 43 1 -1.5875 8.0447 -0.7554 44 1 -0.4616 9.3281 -0.2542 45 1 4.2131 3.1178 -1.9916 46 1 3.9658 4.6432 -1.1032 47 1 3.6218 3.4138 0.9957 48 1 5.1584 2.8891 0.2656 49 1 3.3402 0.7157 2.1031 50 1 4.9900 -0.9763 4.4572 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037858551.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:39:40 Heat of formation + Delta-G solvation = -118.950663 kcal Electronic energy + Delta-G solvation = -31072.235507 eV Core-core repulsion = 26906.000728 eV Total energy + Delta-G solvation = -4166.234779 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.04068 -41.01661 -39.15798 -38.72832 -36.43216 -36.19292 -35.34534 -33.46226 -31.56004 -31.07027 -30.78192 -29.60032 -27.44982 -26.25388 -25.16113 -24.83625 -24.30464 -22.24578 -21.39471 -20.57739 -19.91758 -19.07003 -18.78977 -18.50219 -18.07382 -17.17898 -16.82619 -16.67955 -16.61675 -16.09764 -15.78704 -15.61256 -15.45724 -15.26682 -14.97574 -14.74875 -14.55213 -14.48006 -14.35318 -14.09851 -14.01056 -13.61251 -13.15687 -13.07763 -13.02761 -12.80966 -12.79804 -12.68141 -12.55647 -12.31492 -12.22234 -12.09026 -11.85786 -11.63903 -11.60285 -11.54544 -11.17489 -11.11660 -10.82667 -10.56133 -9.87411 -9.69624 -8.96873 -7.90704 -5.18797 1.24063 1.48020 1.50563 1.51065 1.56440 1.63881 2.10352 2.58031 2.74712 3.26263 3.40679 3.43749 3.74576 3.76430 3.81203 3.97771 4.00849 4.05059 4.11300 4.18753 4.20932 4.31200 4.32991 4.38602 4.39305 4.44057 4.48389 4.60695 4.69562 4.73054 4.77400 4.80392 4.82027 4.86958 4.97327 5.02645 5.07584 5.14252 5.26664 5.35741 5.43991 5.50902 5.57122 5.63818 5.73469 6.20003 6.29803 6.34993 6.86338 7.06467 7.36222 8.12408 8.35669 9.32876 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.018392 B = 0.002617 C = 0.002486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1522.051609 B =10694.986353 C =11261.403028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.106 4.106 3 C -0.094 4.094 4 H 0.041 0.959 5 C 0.128 3.872 6 N -0.605 5.605 7 C 0.497 3.503 8 O -0.578 6.578 9 C 0.090 3.910 10 N -0.588 5.588 11 C 0.077 3.923 12 C 0.040 3.960 13 O -0.376 6.376 14 C 0.059 3.941 15 C 0.480 3.520 16 O -0.588 6.588 17 C 0.114 3.886 18 C -0.146 4.146 19 C 0.180 3.820 20 H 0.054 0.946 21 N -0.733 5.733 22 C -0.230 4.230 23 H 0.081 0.919 24 C -0.079 4.079 25 N -0.973 5.973 26 Si 0.970 3.030 27 H -0.277 1.277 28 H -0.302 1.302 29 H -0.277 1.277 30 H 0.039 0.961 31 H 0.064 0.936 32 H 0.062 0.938 33 H 0.069 0.931 34 H 0.045 0.955 35 H 0.081 0.919 36 H 0.088 0.912 37 H 0.154 0.846 38 H 0.107 0.893 39 H 0.096 0.904 40 H 0.103 0.897 41 H 0.059 0.941 42 H 0.150 0.850 43 H 0.099 0.901 44 H 0.144 0.856 45 H 0.099 0.901 46 H 0.106 0.894 47 H 0.035 0.965 48 H 0.070 0.930 49 H 0.368 0.632 50 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.398 17.360 -20.811 28.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.144 4.144 3 C -0.114 4.114 4 H 0.059 0.941 5 C 0.005 3.995 6 N -0.338 5.338 7 C 0.285 3.715 8 O -0.458 6.458 9 C -0.036 4.036 10 N -0.320 5.320 11 C -0.044 4.044 12 C -0.036 4.036 13 O -0.294 6.294 14 C -0.021 4.021 15 C 0.269 3.731 16 O -0.469 6.469 17 C -0.009 4.009 18 C -0.187 4.187 19 C 0.071 3.929 20 H 0.072 0.928 21 N -0.371 5.371 22 C -0.362 4.362 23 H 0.098 0.902 24 C -0.271 4.271 25 N -0.624 5.624 26 Si 0.799 3.201 27 H -0.204 1.204 28 H -0.229 1.229 29 H -0.203 1.203 30 H 0.058 0.942 31 H 0.083 0.917 32 H 0.081 0.919 33 H 0.088 0.912 34 H 0.064 0.936 35 H 0.099 0.901 36 H 0.106 0.894 37 H 0.171 0.829 38 H 0.125 0.875 39 H 0.115 0.885 40 H 0.122 0.878 41 H 0.077 0.923 42 H 0.168 0.832 43 H 0.117 0.883 44 H 0.161 0.839 45 H 0.117 0.883 46 H 0.124 0.876 47 H 0.054 0.946 48 H 0.089 0.911 49 H 0.200 0.800 50 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -8.683 17.296 -20.458 28.161 hybrid contribution 0.682 -1.259 1.500 2.074 sum -8.001 16.037 -18.958 26.088 Atomic orbital electron populations 1.21772 0.95094 1.01913 1.01462 1.21349 0.95878 0.95143 1.02059 1.21633 0.96091 0.96439 0.97246 0.94089 1.21598 0.99068 0.82008 0.96807 1.48252 1.09171 1.06417 1.69915 1.21548 0.86968 0.87375 0.75562 1.90634 1.16240 1.86991 1.51910 1.21552 0.91383 0.83904 1.06741 1.47279 1.38446 1.38424 1.07812 1.22477 0.99553 1.01821 0.80552 1.23232 0.95109 0.90771 0.94497 1.88178 1.94870 1.32372 1.13950 1.22807 0.95870 0.96781 0.86615 1.21685 0.83960 0.83206 0.84210 1.90755 1.65399 1.64825 1.25877 1.22064 0.78413 1.02745 0.97662 1.22578 1.01428 0.97768 0.96899 1.20421 0.92072 0.91280 0.89092 0.92799 1.42618 1.15555 1.65003 1.13952 1.19581 0.92539 1.25655 0.98395 0.90159 1.25524 1.01689 1.03310 0.96551 1.69825 1.37267 1.50167 1.05163 0.85264 0.80262 0.78438 0.76124 1.20363 1.22899 1.20336 0.94159 0.91724 0.91903 0.91227 0.93629 0.90111 0.89407 0.82851 0.87536 0.88543 0.87847 0.92309 0.83214 0.88293 0.83868 0.88293 0.87566 0.94582 0.91143 0.80043 0.94342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.10 9.67 71.98 0.70 -3.41 16 2 C -0.11 -3.51 5.31 30.59 0.16 -3.35 16 3 C -0.09 -3.16 1.93 -10.72 -0.02 -3.18 16 4 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 5 C 0.13 3.53 5.32 86.36 0.46 3.99 16 6 N -0.61 -15.42 2.97 -818.09 -2.43 -17.85 16 7 C 0.50 13.23 7.76 87.66 0.68 13.91 16 8 O -0.58 -19.25 15.84 -3.04 -0.05 -19.30 16 9 C 0.09 1.77 4.14 85.63 0.35 2.13 16 10 N -0.59 -11.65 2.32 -828.99 -1.93 -13.58 16 11 C 0.08 0.86 6.62 86.47 0.57 1.43 16 12 C 0.04 0.41 6.90 71.99 0.50 0.91 16 13 O -0.38 -5.60 10.85 -148.98 -1.62 -7.21 16 14 C 0.06 1.02 6.98 71.13 0.50 1.51 16 15 C 0.48 11.98 7.58 87.69 0.66 12.65 16 16 O -0.59 -20.24 16.36 -3.04 -0.05 -20.29 16 17 C 0.11 2.46 6.37 86.51 0.55 3.01 16 18 C -0.15 -4.71 5.67 30.82 0.17 -4.54 16 19 C 0.18 6.68 2.19 45.02 0.10 6.78 16 20 H 0.05 1.95 8.08 -2.39 -0.02 1.94 16 21 N -0.73 -35.96 4.33 -322.81 -1.40 -37.36 16 22 C -0.23 -12.30 9.93 84.03 0.83 -11.47 16 23 H 0.08 4.04 7.83 -2.91 -0.02 4.01 16 24 C -0.08 -4.48 5.50 84.86 0.47 -4.01 16 25 N -0.97 -60.00 13.06 21.65 0.28 -59.72 16 26 Si 0.97 45.69 29.55 68.60 2.03 47.72 16 27 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 28 H -0.30 -14.65 7.11 99.48 0.71 -13.94 16 29 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 30 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.06 1.62 6.70 -2.39 -0.02 1.61 16 32 H 0.06 1.61 8.14 -2.38 -0.02 1.59 16 33 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 34 H 0.04 1.86 7.22 -2.39 -0.02 1.85 16 35 H 0.08 2.41 5.72 -2.39 -0.01 2.40 16 36 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 37 H 0.15 1.54 7.83 -2.39 -0.02 1.53 16 38 H 0.11 2.44 6.79 -2.39 -0.02 2.43 16 39 H 0.10 0.94 8.13 -2.38 -0.02 0.92 16 40 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 41 H 0.06 0.72 8.10 -2.39 -0.02 0.70 16 42 H 0.15 0.50 8.14 -2.39 -0.02 0.48 16 43 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 44 H 0.14 2.06 8.14 -2.39 -0.02 2.04 16 45 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 46 H 0.11 1.70 5.93 -2.39 -0.01 1.68 16 47 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 48 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 49 H 0.37 20.24 7.51 -92.71 -0.70 19.54 16 50 H 0.25 14.99 8.31 -92.71 -0.77 14.22 16 Total: -1.00 -79.20 394.33 1.78 -77.42 By element: Atomic # 1 Polarization: 33.56 SS G_CDS: 0.24 Total: 33.80 kcal Atomic # 6 Polarization: 9.67 SS G_CDS: 6.69 Total: 16.36 kcal Atomic # 7 Polarization: -123.04 SS G_CDS: -5.47 Total: -128.50 kcal Atomic # 8 Polarization: -45.09 SS G_CDS: -1.72 Total: -46.80 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 2.03 Total: 47.72 kcal Total: -79.20 1.78 -77.42 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037858551.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.529 kcal (2) G-P(sol) polarization free energy of solvation -79.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds