Wall clock time and date at job start Tue Mar 31 2020 23:39:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53008 * 109.46985 * 2 1 4 4 H 1.08998 * 109.49195 * 304.93357 * 3 2 1 5 5 C 1.53186 * 109.49802 * 64.99745 * 3 2 1 6 6 N 1.46926 * 108.77396 * 174.61700 * 5 3 2 7 7 C 1.34780 * 120.62707 * 126.37270 * 6 5 3 8 8 O 1.21280 * 120.00423 * 359.97438 * 7 6 5 9 9 C 1.50701 * 119.99795 * 180.02562 * 7 6 5 10 10 N 1.46499 * 109.46992 * 179.97438 * 9 7 6 11 11 C 1.46090 * 118.73150 * 269.73105 * 10 9 7 12 12 C 1.53212 * 109.82368 * 161.46912 * 11 10 9 13 13 O 1.43244 * 108.51523 * 49.53969 * 12 11 10 14 14 C 1.42967 * 112.98866 * 291.46089 * 13 12 11 15 15 C 1.33875 * 118.72875 * 89.99927 * 10 9 7 16 16 O 1.21281 * 118.83234 * 1.88741 * 15 10 9 17 17 C 1.46921 * 118.74177 * 306.64666 * 6 5 3 18 18 C 1.52760 * 109.00903 * 53.30762 * 17 6 5 19 19 C 1.53040 * 109.38219 * 305.58856 * 18 17 6 20 20 H 1.08996 * 109.45241 * 181.25332 * 19 18 17 21 21 N 1.46496 * 109.46347 * 301.22179 * 19 18 17 22 22 C 1.36942 * 119.99791 * 275.06904 * 21 19 18 23 23 H 1.07998 * 120.00314 * 359.97438 * 22 21 19 24 24 C 1.38814 * 119.99731 * 179.97438 * 22 21 19 25 25 N 1.31618 * 120.00625 * 0.02562 * 24 22 21 26 26 Si 1.86805 * 119.99767 * 179.97438 * 24 22 21 27 27 H 1.48498 * 109.47259 * 89.99824 * 26 24 22 28 28 H 1.48500 * 109.47154 * 210.00530 * 26 24 22 29 29 H 1.48504 * 109.47025 * 329.99694 * 26 24 22 30 30 H 1.09004 * 109.47531 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47581 * 300.00302 * 1 2 3 32 32 H 1.09003 * 109.47241 * 59.99980 * 1 2 3 33 33 H 1.08999 * 109.47147 * 240.00327 * 2 1 3 34 34 H 1.08999 * 109.47217 * 119.99515 * 2 1 3 35 35 H 1.09005 * 109.58747 * 54.83323 * 5 3 2 36 36 H 1.08998 * 109.58884 * 294.40837 * 5 3 2 37 37 H 1.09002 * 109.47060 * 299.99722 * 9 7 6 38 38 H 1.09001 * 109.47380 * 59.99809 * 9 7 6 39 39 H 1.09000 * 109.39695 * 281.78226 * 11 10 9 40 40 H 1.08997 * 109.39233 * 41.50373 * 11 10 9 41 41 H 1.08998 * 109.82662 * 289.74653 * 12 11 10 42 42 H 1.09001 * 109.66875 * 169.23971 * 12 11 10 43 43 H 1.09003 * 109.41084 * 289.49619 * 14 13 12 44 44 H 1.08991 * 109.35901 * 169.66659 * 14 13 12 45 45 H 1.08996 * 109.58649 * 173.14582 * 17 6 5 46 46 H 1.09004 * 109.58204 * 293.57028 * 17 6 5 47 47 H 1.09000 * 109.56394 * 185.56047 * 18 17 6 48 48 H 1.08995 * 109.36180 * 65.49907 * 18 17 6 49 49 H 0.96997 * 120.00409 * 95.06551 * 21 19 18 50 50 H 0.96996 * 120.00570 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6064 1.9816 -0.8424 5 6 1.6349 2.1281 1.3087 6 7 2.2408 3.4660 1.3489 7 6 1.4802 4.5580 1.5624 8 8 0.2838 4.4418 1.7232 9 6 2.1164 5.9236 1.6003 10 7 1.0859 6.9358 1.8446 11 6 0.4143 7.5450 0.6991 12 6 -0.8958 8.1978 1.1517 13 8 -0.6234 9.0221 2.2911 14 6 -0.2705 8.2686 3.4538 15 6 0.7998 7.2707 3.1088 16 8 1.4266 6.7511 4.0077 17 6 3.6905 3.5915 1.1458 18 6 4.0732 2.8891 -0.1556 19 6 3.5655 1.4457 -0.1221 20 1 3.8573 0.9369 -1.0407 21 7 4.1485 0.7498 1.0277 22 6 5.3869 0.1746 0.9239 23 1 5.9336 0.2336 -0.0056 24 6 5.9395 -0.4844 2.0135 25 7 5.2731 -0.5569 3.1462 26 14 7.6285 -1.2697 1.8718 27 1 8.6678 -0.2816 2.2576 28 1 7.7047 -2.4464 2.7745 29 1 7.8558 -1.7056 0.4705 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3634 0.5138 -0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5137 0.8900 35 1 1.9912 1.5401 2.1546 36 1 0.5495 2.2169 1.3540 37 1 2.8564 5.9577 2.3999 38 1 2.6032 6.1243 0.6459 39 1 1.0650 8.2996 0.2573 40 1 0.1966 6.7771 -0.0432 41 1 -1.6185 7.4279 1.4217 42 1 -1.2983 8.8105 0.3450 43 1 -1.1500 7.7427 3.8253 44 1 0.0994 8.9451 4.2242 45 1 3.9609 4.6456 1.0837 46 1 4.2177 3.1253 1.9782 47 1 5.1576 2.8907 -0.2660 48 1 3.6206 3.4145 -0.9965 49 1 3.6574 0.6964 1.8624 50 1 5.6594 -1.0171 3.9077 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037858554.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:39:51 Heat of formation + Delta-G solvation = -92.816866 kcal Electronic energy + Delta-G solvation = -31456.350220 eV Core-core repulsion = 27291.248688 eV Total energy + Delta-G solvation = -4165.101532 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.05118 -39.86119 -38.03098 -37.69340 -35.46337 -34.48368 -33.76924 -31.73288 -30.72641 -29.76697 -29.37387 -28.33519 -26.45453 -24.66329 -24.09762 -23.74042 -23.47182 -20.85082 -20.08617 -19.15684 -18.31581 -17.95080 -17.50159 -17.21235 -17.01533 -16.14251 -15.72117 -15.67810 -15.11517 -14.77774 -14.71215 -14.36067 -14.19055 -14.01038 -13.73499 -13.54697 -13.37987 -13.30720 -13.17914 -13.03896 -12.55410 -12.27558 -12.08975 -12.04088 -11.78341 -11.60571 -11.40640 -11.11314 -10.99742 -10.83471 -10.82364 -10.76264 -10.33571 -10.29294 -10.18649 -9.93959 -9.80993 -9.66325 -9.57688 -8.96238 -8.85941 -8.25756 -7.00097 -5.80548 -3.09583 2.25220 2.52566 2.75903 3.28136 3.40185 3.42334 3.45874 3.47695 4.04079 4.41567 4.55501 4.57165 4.69020 4.79692 4.90667 5.03910 5.07850 5.10198 5.23631 5.24692 5.29080 5.31174 5.39046 5.43869 5.51812 5.56905 5.66589 5.76945 5.78113 5.87125 5.92122 6.07434 6.12483 6.16208 6.32699 6.34817 6.38042 6.41323 6.53979 6.59779 6.67734 6.73551 6.91057 6.97888 7.08551 7.65696 7.66539 7.84548 8.33025 8.37533 9.49226 10.05656 10.40439 11.41648 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.015717 B = 0.002974 C = 0.002722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1781.049834 B = 9411.815817 C =10283.136808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.110 4.110 3 C -0.102 4.102 4 H 0.065 0.935 5 C 0.119 3.881 6 N -0.598 5.598 7 C 0.500 3.500 8 O -0.549 6.549 9 C 0.091 3.909 10 N -0.587 5.587 11 C 0.084 3.916 12 C 0.044 3.956 13 O -0.372 6.372 14 C 0.053 3.947 15 C 0.492 3.508 16 O -0.535 6.535 17 C 0.112 3.888 18 C -0.150 4.150 19 C 0.179 3.821 20 H 0.051 0.949 21 N -0.719 5.719 22 C -0.239 4.239 23 H 0.069 0.931 24 C -0.011 4.011 25 N -0.931 5.931 26 Si 0.904 3.096 27 H -0.291 1.291 28 H -0.293 1.293 29 H -0.283 1.283 30 H 0.049 0.951 31 H 0.053 0.947 32 H 0.046 0.954 33 H 0.061 0.939 34 H 0.077 0.923 35 H 0.074 0.926 36 H 0.085 0.915 37 H 0.117 0.883 38 H 0.108 0.892 39 H 0.077 0.923 40 H 0.087 0.913 41 H 0.068 0.932 42 H 0.116 0.884 43 H 0.092 0.908 44 H 0.131 0.869 45 H 0.067 0.933 46 H 0.087 0.913 47 H 0.076 0.924 48 H 0.048 0.952 49 H 0.384 0.616 50 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.478 16.624 -7.781 21.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.148 4.148 3 C -0.122 4.122 4 H 0.083 0.917 5 C -0.003 4.003 6 N -0.330 5.330 7 C 0.286 3.714 8 O -0.427 6.427 9 C -0.035 4.035 10 N -0.320 5.320 11 C -0.039 4.039 12 C -0.033 4.033 13 O -0.290 6.290 14 C -0.026 4.026 15 C 0.280 3.720 16 O -0.412 6.412 17 C -0.010 4.010 18 C -0.191 4.191 19 C 0.068 3.932 20 H 0.069 0.931 21 N -0.361 5.361 22 C -0.370 4.370 23 H 0.087 0.913 24 C -0.207 4.207 25 N -0.579 5.579 26 Si 0.735 3.265 27 H -0.218 1.218 28 H -0.219 1.219 29 H -0.209 1.209 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.066 0.934 33 H 0.080 0.920 34 H 0.095 0.905 35 H 0.093 0.907 36 H 0.103 0.897 37 H 0.135 0.865 38 H 0.125 0.875 39 H 0.096 0.904 40 H 0.105 0.895 41 H 0.087 0.913 42 H 0.134 0.866 43 H 0.110 0.890 44 H 0.148 0.852 45 H 0.086 0.914 46 H 0.106 0.894 47 H 0.094 0.906 48 H 0.066 0.934 49 H 0.219 0.781 50 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -11.637 16.423 -7.252 21.394 hybrid contribution 1.032 -0.888 0.116 1.366 sum -10.605 15.535 -7.136 20.118 Atomic orbital electron populations 1.21849 0.96845 1.01043 1.01272 1.21418 0.94246 0.95753 1.03401 1.21741 0.97389 0.96131 0.96923 0.91696 1.21684 0.98692 0.81578 0.98330 1.48121 1.08709 1.06497 1.69677 1.20892 0.87289 0.86445 0.76759 1.90635 1.14920 1.86556 1.50628 1.21433 0.91374 0.85973 1.04756 1.47048 1.39421 1.39367 1.06196 1.22202 0.94778 0.98098 0.88869 1.23042 0.95339 0.95377 0.89512 1.88167 1.89107 1.32481 1.19292 1.22822 0.96155 0.94091 0.89560 1.20977 0.85042 0.83569 0.82457 1.90776 1.50460 1.54537 1.45438 1.21680 0.79165 0.99850 1.00349 1.22460 1.01914 0.99405 0.95329 1.20212 0.89720 0.90606 0.92649 0.93111 1.42484 1.19009 1.64057 1.10564 1.19199 0.93548 1.27224 0.97073 0.91263 1.24712 0.98519 1.01426 0.96027 1.69644 1.37987 1.48015 1.02239 0.86245 0.84426 0.78774 0.77026 1.21809 1.21891 1.20867 0.93142 0.92840 0.93439 0.92007 0.90464 0.90738 0.89721 0.86470 0.87454 0.90443 0.89470 0.91338 0.86640 0.88985 0.85150 0.91442 0.89441 0.90581 0.93375 0.78069 0.93478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.06 9.67 37.16 0.36 -1.70 16 2 C -0.11 -1.74 5.19 -26.73 -0.14 -1.88 16 3 C -0.10 -1.62 2.14 -90.50 -0.19 -1.81 16 4 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 5 C 0.12 2.02 5.03 -3.71 -0.02 2.00 16 6 N -0.60 -9.55 2.98 -173.04 -0.52 -10.06 16 7 C 0.50 7.91 7.76 -10.98 -0.09 7.83 16 8 O -0.55 -10.18 15.84 5.56 0.09 -10.09 16 9 C 0.09 1.13 4.14 -5.19 -0.02 1.11 16 10 N -0.59 -7.01 2.32 -175.67 -0.41 -7.42 16 11 C 0.08 0.68 6.63 -4.15 -0.03 0.66 16 12 C 0.04 0.32 6.91 37.27 0.26 0.58 16 13 O -0.37 -3.42 10.85 -35.23 -0.38 -3.80 16 14 C 0.05 0.52 6.98 35.83 0.25 0.77 16 15 C 0.49 6.66 7.58 -11.56 -0.09 6.57 16 16 O -0.54 -9.39 16.36 5.56 0.09 -9.30 16 17 C 0.11 1.71 6.06 -3.94 -0.02 1.69 16 18 C -0.15 -2.32 5.76 -26.83 -0.15 -2.48 16 19 C 0.18 3.21 2.53 -67.89 -0.17 3.03 16 20 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 21 N -0.72 -16.23 3.73 -53.39 -0.20 -16.43 16 22 C -0.24 -6.15 9.93 -15.06 -0.15 -6.30 16 23 H 0.07 1.74 7.83 -52.49 -0.41 1.33 16 24 C -0.01 -0.29 5.50 -17.43 -0.10 -0.38 16 25 N -0.93 -27.04 13.06 55.49 0.72 -26.31 16 26 Si 0.90 21.68 29.55 -169.99 -5.02 16.66 16 27 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 28 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 29 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 30 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.05 0.74 6.70 -51.93 -0.35 0.39 16 32 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 34 H 0.08 1.43 7.70 -51.93 -0.40 1.03 16 35 H 0.07 1.44 6.64 -51.93 -0.34 1.09 16 36 H 0.08 1.46 5.72 -51.93 -0.30 1.16 16 37 H 0.12 1.58 7.05 -51.93 -0.37 1.21 16 38 H 0.11 0.98 7.57 -51.93 -0.39 0.59 16 39 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.09 0.68 8.13 -51.93 -0.42 0.26 16 41 H 0.07 0.54 8.10 -51.93 -0.42 0.12 16 42 H 0.12 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.13 1.05 8.14 -51.93 -0.42 0.63 16 45 H 0.07 0.82 5.93 -51.93 -0.31 0.51 16 46 H 0.09 1.63 7.74 -51.93 -0.40 1.23 16 47 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 48 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 49 H 0.38 9.43 5.94 -40.82 -0.24 9.18 16 50 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 390.67 15.07 5.89 5.89 Total: -1.00 -33.33 390.67 -8.17 -41.50 By element: Atomic # 1 Polarization: 17.82 SS G_CDS: -8.14 Total: 9.68 kcal Atomic # 6 Polarization: 9.99 SS G_CDS: -0.30 Total: 9.69 kcal Atomic # 7 Polarization: -59.83 SS G_CDS: -0.40 Total: -60.22 kcal Atomic # 8 Polarization: -22.99 SS G_CDS: -0.20 Total: -23.19 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -33.33 -8.17 -41.50 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037858554.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.313 kcal (2) G-P(sol) polarization free energy of solvation -33.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds