Wall clock time and date at job start Tue Mar 31 2020 23:39:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47336 * 2 1 4 4 H 1.09003 * 109.51797 * 305.08359 * 3 2 1 5 5 C 1.53196 * 109.49836 * 65.15938 * 3 2 1 6 6 N 1.46918 * 108.77417 * 174.58985 * 5 3 2 7 7 C 1.34785 * 120.63350 * 126.37351 * 6 5 3 8 8 O 1.21279 * 119.99468 * 359.97438 * 7 6 5 9 9 C 1.50690 * 120.00391 * 179.97438 * 7 6 5 10 10 N 1.46493 * 109.47447 * 179.97438 * 9 7 6 11 11 C 1.46094 * 118.73325 * 89.99654 * 10 9 7 12 12 C 1.53017 * 109.92771 * 161.61869 * 11 10 9 13 13 O 1.43247 * 108.66627 * 49.16581 * 12 11 10 14 14 C 1.42964 * 112.99090 * 291.63828 * 13 12 11 15 15 C 1.33876 * 118.72835 * 269.73180 * 10 9 7 16 16 O 1.21273 * 118.83499 * 1.90567 * 15 10 9 17 17 C 1.46930 * 118.74024 * 306.39214 * 6 5 3 18 18 C 1.53188 * 108.77276 * 53.60944 * 17 6 5 19 19 C 1.53033 * 109.31371 * 305.36363 * 18 17 6 20 20 H 1.08999 * 109.45340 * 301.35215 * 19 18 17 21 21 N 1.46500 * 109.46114 * 181.38608 * 19 18 17 22 22 C 1.36943 * 119.99878 * 84.93157 * 21 19 18 23 23 H 1.07996 * 119.99698 * 0.02562 * 22 21 19 24 24 C 1.38809 * 119.99902 * 179.97438 * 22 21 19 25 25 N 1.31620 * 120.00319 * 0.02562 * 24 22 21 26 26 Si 1.86798 * 120.00011 * 180.02562 * 24 22 21 27 27 H 1.48506 * 109.47297 * 59.99967 * 26 24 22 28 28 H 1.48503 * 109.47261 * 300.00148 * 26 24 22 29 29 H 1.48500 * 109.47454 * 180.02562 * 26 24 22 30 30 H 1.09006 * 109.47361 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47283 * 299.99792 * 1 2 3 32 32 H 1.08998 * 109.47490 * 60.00043 * 1 2 3 33 33 H 1.08992 * 109.47198 * 239.99754 * 2 1 3 34 34 H 1.09007 * 109.47012 * 119.99688 * 2 1 3 35 35 H 1.08995 * 109.58629 * 294.38032 * 5 3 2 36 36 H 1.09002 * 109.58351 * 54.65565 * 5 3 2 37 37 H 1.08998 * 109.47208 * 300.00258 * 9 7 6 38 38 H 1.09006 * 109.46933 * 59.99564 * 9 7 6 39 39 H 1.08998 * 109.39550 * 281.76710 * 11 10 9 40 40 H 1.09006 * 109.38706 * 41.57806 * 11 10 9 41 41 H 1.08997 * 109.60850 * 168.91744 * 12 11 10 42 42 H 1.09003 * 109.60595 * 289.25179 * 12 11 10 43 43 H 1.09004 * 109.41594 * 169.70640 * 14 13 12 44 44 H 1.09005 * 109.41245 * 289.56406 * 14 13 12 45 45 H 1.09004 * 109.58466 * 173.40097 * 17 6 5 46 46 H 1.09001 * 109.58286 * 293.67950 * 17 6 5 47 47 H 1.09000 * 109.49274 * 185.41340 * 18 17 6 48 48 H 1.08993 * 109.49619 * 65.32229 * 18 17 6 49 49 H 0.97000 * 120.00415 * 264.93105 * 21 19 18 50 50 H 0.97001 * 119.99542 * 359.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6047 1.9827 -0.8407 5 6 1.6385 2.1268 1.3105 6 7 2.2451 3.4643 1.3506 7 6 1.4856 4.5566 1.5672 8 8 0.2895 4.4407 1.7308 9 6 2.1227 5.9217 1.6061 10 7 1.0933 6.9341 1.8538 11 6 0.7836 7.2977 3.2345 12 6 0.0539 8.6422 3.2686 13 8 -1.0190 8.6058 2.3201 14 6 -0.5652 8.5666 0.9650 15 6 0.4765 7.4944 0.8060 16 8 0.7650 7.1206 -0.3110 17 6 3.6952 3.5888 1.1497 18 6 4.0736 2.8881 -0.1589 19 6 3.5652 1.4451 -0.1257 20 1 4.0008 0.9263 0.7282 21 7 3.9541 0.7620 -1.3620 22 6 5.1923 0.1863 -1.4658 23 1 5.8818 0.2354 -0.6361 24 6 5.5606 -0.4614 -2.6370 25 7 4.7199 -0.5217 -3.6480 26 14 7.2492 -1.2473 -2.7783 27 1 7.4001 -2.2884 -1.7301 28 1 8.2953 -0.2087 -2.5986 29 1 7.3952 -1.8693 -4.1189 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 0.5533 2.2161 1.3585 36 1 1.9942 1.5364 2.1549 37 1 2.8641 5.9540 2.4044 38 1 2.6080 6.1235 0.6511 39 1 0.1491 6.5300 3.6773 40 1 1.7095 7.3753 3.8046 41 1 -0.3467 8.8157 4.2673 42 1 0.7478 9.4417 3.0088 43 1 -1.4082 8.3568 0.3065 44 1 -0.1301 9.5304 0.7006 45 1 3.9670 4.6428 1.0918 46 1 4.2208 3.1212 1.9823 47 1 5.1577 2.8894 -0.2719 48 1 3.6192 3.4148 -0.9981 49 1 3.3346 0.7175 -2.1071 50 1 3.8429 -0.1139 -3.5744 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037858556.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:39:55 Heat of formation + Delta-G solvation = -93.412865 kcal Electronic energy + Delta-G solvation = -31097.533312 eV Core-core repulsion = 26932.405935 eV Total energy + Delta-G solvation = -4165.127377 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.16965 -39.95455 -38.09959 -37.76276 -35.59659 -34.89420 -33.97808 -31.83862 -30.87532 -29.87383 -29.38641 -28.38792 -26.44941 -24.65756 -24.16395 -23.83455 -22.83867 -20.97161 -20.31095 -19.51896 -18.82181 -18.08766 -17.64925 -17.28996 -17.16422 -16.28206 -15.86276 -15.77630 -15.21436 -15.12973 -14.77863 -14.54612 -14.13133 -13.90159 -13.80951 -13.61352 -13.51331 -13.46207 -13.19892 -13.14685 -12.88311 -12.36061 -12.18132 -12.06047 -11.89495 -11.71155 -11.68631 -11.36460 -10.95747 -10.92971 -10.75414 -10.60308 -10.32997 -10.24838 -10.09638 -9.98858 -9.85309 -9.76876 -9.17468 -9.01864 -8.89786 -8.53205 -7.04289 -6.10355 -3.10620 2.14670 2.38057 2.59104 3.10545 3.31444 3.49936 3.53202 3.71030 3.92718 4.31061 4.39923 4.50944 4.65142 4.66752 4.77851 4.81341 4.92085 4.97293 5.10264 5.14135 5.16137 5.19546 5.26657 5.36676 5.37996 5.47982 5.57762 5.60944 5.63863 5.78404 5.83311 5.94639 6.05094 6.07760 6.18256 6.28567 6.31462 6.32944 6.37200 6.48968 6.59852 6.74288 6.85199 6.97173 6.98128 7.42363 7.73579 7.78770 8.16210 8.74838 9.21616 10.08103 10.23681 11.37723 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.018348 B = 0.002618 C = 0.002488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1525.693798 B =10692.469505 C =11249.369860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.110 4.110 3 C -0.106 4.106 4 H 0.068 0.932 5 C 0.121 3.879 6 N -0.605 5.605 7 C 0.500 3.500 8 O -0.539 6.539 9 C 0.092 3.908 10 N -0.588 5.588 11 C 0.079 3.921 12 C 0.045 3.955 13 O -0.368 6.368 14 C 0.054 3.946 15 C 0.491 3.509 16 O -0.533 6.533 17 C 0.107 3.893 18 C -0.152 4.152 19 C 0.190 3.810 20 H 0.049 0.951 21 N -0.731 5.731 22 C -0.330 4.330 23 H 0.063 0.937 24 C -0.044 4.044 25 N -0.943 5.943 26 Si 1.078 2.922 27 H -0.296 1.296 28 H -0.296 1.296 29 H -0.285 1.285 30 H 0.050 0.950 31 H 0.049 0.951 32 H 0.051 0.949 33 H 0.079 0.921 34 H 0.058 0.942 35 H 0.089 0.911 36 H 0.065 0.935 37 H 0.108 0.892 38 H 0.117 0.883 39 H 0.081 0.919 40 H 0.087 0.913 41 H 0.117 0.883 42 H 0.064 0.936 43 H 0.132 0.868 44 H 0.091 0.909 45 H 0.074 0.926 46 H 0.070 0.930 47 H 0.077 0.923 48 H 0.059 0.941 49 H 0.367 0.633 50 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.119 18.015 17.597 26.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.148 4.148 3 C -0.126 4.126 4 H 0.087 0.913 5 C -0.001 4.001 6 N -0.339 5.339 7 C 0.287 3.713 8 O -0.416 6.416 9 C -0.035 4.035 10 N -0.321 5.321 11 C -0.044 4.044 12 C -0.032 4.032 13 O -0.286 6.286 14 C -0.025 4.025 15 C 0.278 3.722 16 O -0.409 6.409 17 C -0.016 4.016 18 C -0.194 4.194 19 C 0.080 3.920 20 H 0.067 0.933 21 N -0.373 5.373 22 C -0.461 4.461 23 H 0.082 0.918 24 C -0.242 4.242 25 N -0.588 5.588 26 Si 0.909 3.091 27 H -0.223 1.223 28 H -0.223 1.223 29 H -0.211 1.211 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.070 0.930 33 H 0.098 0.902 34 H 0.077 0.923 35 H 0.108 0.892 36 H 0.083 0.917 37 H 0.126 0.874 38 H 0.135 0.865 39 H 0.099 0.901 40 H 0.105 0.895 41 H 0.135 0.865 42 H 0.083 0.917 43 H 0.150 0.850 44 H 0.109 0.891 45 H 0.093 0.907 46 H 0.088 0.912 47 H 0.096 0.904 48 H 0.078 0.922 49 H 0.200 0.800 50 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -6.634 16.900 16.303 24.401 hybrid contribution -0.681 0.790 0.785 1.305 sum -7.315 17.689 17.088 25.660 Atomic orbital electron populations 1.21844 0.96669 1.01099 1.01393 1.21430 0.94481 0.95641 1.03278 1.21807 0.97672 0.96244 0.96921 0.91332 1.21706 0.99426 0.81381 0.97626 1.48177 1.08554 1.06724 1.70415 1.20956 0.87369 0.86340 0.76655 1.90677 1.14677 1.86306 1.49901 1.21444 0.90574 0.86078 1.05378 1.47048 1.39276 1.39178 1.06613 1.22236 1.01262 0.98363 0.82503 1.23006 0.90006 0.95259 0.94922 1.88217 1.31113 1.94776 1.14484 1.22819 0.97735 0.96808 0.85163 1.21017 0.82787 0.83804 0.84551 1.90787 1.63841 1.62345 1.23972 1.21882 0.79389 1.00968 0.99396 1.22669 1.02304 0.99243 0.95137 1.20097 0.90626 0.90421 0.90865 0.93336 1.42423 1.16488 1.65651 1.12750 1.19995 0.92427 1.32079 1.01576 0.91850 1.25728 1.05810 1.00265 0.92423 1.70878 1.08328 1.47513 1.32100 0.83264 0.74201 0.75833 0.75768 1.22326 1.22349 1.21095 0.93061 0.93151 0.93002 0.90242 0.92350 0.89245 0.91656 0.87433 0.86481 0.90061 0.89525 0.86535 0.91750 0.85014 0.89146 0.90717 0.91204 0.90434 0.92181 0.79952 0.93334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.21 9.67 37.16 0.36 -1.85 16 2 C -0.11 -1.83 5.31 -26.73 -0.14 -1.97 16 3 C -0.11 -1.80 1.92 -90.50 -0.17 -1.98 16 4 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 5 C 0.12 1.81 5.33 -3.71 -0.02 1.79 16 6 N -0.61 -8.57 2.97 -172.77 -0.51 -9.08 16 7 C 0.50 7.34 7.76 -10.99 -0.09 7.26 16 8 O -0.54 -9.75 15.84 5.56 0.09 -9.66 16 9 C 0.09 1.01 4.12 -5.20 -0.02 0.99 16 10 N -0.59 -6.38 2.32 -175.80 -0.41 -6.79 16 11 C 0.08 0.56 6.67 -4.25 -0.03 0.54 16 12 C 0.05 0.25 6.89 37.17 0.26 0.51 16 13 O -0.37 -3.29 10.86 -35.23 -0.38 -3.67 16 14 C 0.05 0.49 6.99 35.83 0.25 0.74 16 15 C 0.49 6.21 7.58 -11.56 -0.09 6.13 16 16 O -0.53 -8.97 16.38 5.56 0.09 -8.88 16 17 C 0.11 1.34 6.34 -3.71 -0.02 1.32 16 18 C -0.15 -2.56 5.66 -26.62 -0.15 -2.71 16 19 C 0.19 3.63 2.19 -67.89 -0.15 3.48 16 20 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 21 N -0.73 -17.63 4.33 -53.39 -0.23 -17.86 16 22 C -0.33 -8.94 9.93 -15.06 -0.15 -9.09 16 23 H 0.06 1.68 7.83 -52.49 -0.41 1.27 16 24 C -0.04 -1.27 5.50 -17.43 -0.10 -1.36 16 25 N -0.94 -28.95 13.70 55.49 0.76 -28.19 16 26 Si 1.08 25.60 29.92 -169.99 -5.09 20.51 16 27 H -0.30 -6.71 7.11 56.52 0.40 -6.31 16 28 H -0.30 -6.70 7.11 56.52 0.40 -6.30 16 29 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 30 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.05 0.68 6.70 -51.93 -0.35 0.33 16 32 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.08 1.56 7.22 -51.93 -0.37 1.18 16 34 H 0.06 0.93 8.14 -51.92 -0.42 0.51 16 35 H 0.09 1.43 5.73 -51.93 -0.30 1.13 16 36 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 37 H 0.11 0.77 7.73 -51.93 -0.40 0.37 16 38 H 0.12 1.40 6.83 -51.93 -0.35 1.04 16 39 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.09 0.36 7.99 -51.93 -0.42 -0.06 16 41 H 0.12 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.06 0.26 8.10 -51.93 -0.42 -0.16 16 43 H 0.13 1.13 8.14 -51.93 -0.42 0.71 16 44 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 45 H 0.07 0.74 5.93 -51.93 -0.31 0.44 16 46 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 47 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 48 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 49 H 0.37 9.39 6.34 -40.82 -0.26 9.13 16 50 H 0.26 7.76 6.77 -40.82 -0.28 7.48 16 LS Contribution 392.47 15.07 5.91 5.91 Total: -1.00 -36.65 392.47 -8.18 -44.83 By element: Atomic # 1 Polarization: 17.24 SS G_CDS: -8.15 Total: 9.09 kcal Atomic # 6 Polarization: 4.04 SS G_CDS: -0.26 Total: 3.78 kcal Atomic # 7 Polarization: -61.52 SS G_CDS: -0.39 Total: -61.92 kcal Atomic # 8 Polarization: -22.01 SS G_CDS: -0.20 Total: -22.21 kcal Atomic # 14 Polarization: 25.60 SS G_CDS: -5.09 Total: 20.51 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -36.65 -8.18 -44.83 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037858556.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.580 kcal (2) G-P(sol) polarization free energy of solvation -36.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds