Wall clock time and date at job start Tue Mar 31 2020 23:39:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47336 * 2 1 4 4 H 1.09003 * 109.51797 * 305.08359 * 3 2 1 5 5 C 1.53196 * 109.49836 * 65.15938 * 3 2 1 6 6 N 1.46918 * 108.77417 * 174.58985 * 5 3 2 7 7 C 1.34785 * 120.63350 * 126.37351 * 6 5 3 8 8 O 1.21279 * 119.99468 * 359.97438 * 7 6 5 9 9 C 1.50690 * 120.00391 * 179.97438 * 7 6 5 10 10 N 1.46493 * 109.47447 * 179.97438 * 9 7 6 11 11 C 1.46094 * 118.73325 * 89.99654 * 10 9 7 12 12 C 1.53017 * 109.92771 * 161.61869 * 11 10 9 13 13 O 1.43247 * 108.66627 * 49.16581 * 12 11 10 14 14 C 1.42964 * 112.99090 * 291.63828 * 13 12 11 15 15 C 1.33876 * 118.72835 * 269.73180 * 10 9 7 16 16 O 1.21273 * 118.83499 * 1.90567 * 15 10 9 17 17 C 1.46930 * 118.74024 * 306.39214 * 6 5 3 18 18 C 1.53188 * 108.77276 * 53.60944 * 17 6 5 19 19 C 1.53033 * 109.31371 * 305.36363 * 18 17 6 20 20 H 1.08999 * 109.45340 * 301.35215 * 19 18 17 21 21 N 1.46500 * 109.46114 * 181.38608 * 19 18 17 22 22 C 1.36943 * 119.99878 * 84.93157 * 21 19 18 23 23 H 1.07996 * 119.99698 * 0.02562 * 22 21 19 24 24 C 1.38809 * 119.99902 * 179.97438 * 22 21 19 25 25 N 1.31620 * 120.00319 * 0.02562 * 24 22 21 26 26 Si 1.86798 * 120.00011 * 180.02562 * 24 22 21 27 27 H 1.48506 * 109.47297 * 59.99967 * 26 24 22 28 28 H 1.48503 * 109.47261 * 300.00148 * 26 24 22 29 29 H 1.48500 * 109.47454 * 180.02562 * 26 24 22 30 30 H 1.09006 * 109.47361 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47283 * 299.99792 * 1 2 3 32 32 H 1.08998 * 109.47490 * 60.00043 * 1 2 3 33 33 H 1.08992 * 109.47198 * 239.99754 * 2 1 3 34 34 H 1.09007 * 109.47012 * 119.99688 * 2 1 3 35 35 H 1.08995 * 109.58629 * 294.38032 * 5 3 2 36 36 H 1.09002 * 109.58351 * 54.65565 * 5 3 2 37 37 H 1.08998 * 109.47208 * 300.00258 * 9 7 6 38 38 H 1.09006 * 109.46933 * 59.99564 * 9 7 6 39 39 H 1.08998 * 109.39550 * 281.76710 * 11 10 9 40 40 H 1.09006 * 109.38706 * 41.57806 * 11 10 9 41 41 H 1.08997 * 109.60850 * 168.91744 * 12 11 10 42 42 H 1.09003 * 109.60595 * 289.25179 * 12 11 10 43 43 H 1.09004 * 109.41594 * 169.70640 * 14 13 12 44 44 H 1.09005 * 109.41245 * 289.56406 * 14 13 12 45 45 H 1.09004 * 109.58466 * 173.40097 * 17 6 5 46 46 H 1.09001 * 109.58286 * 293.67950 * 17 6 5 47 47 H 1.09000 * 109.49274 * 185.41340 * 18 17 6 48 48 H 1.08993 * 109.49619 * 65.32229 * 18 17 6 49 49 H 0.97000 * 120.00415 * 264.93105 * 21 19 18 50 50 H 0.97001 * 119.99542 * 359.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6047 1.9827 -0.8407 5 6 1.6385 2.1268 1.3105 6 7 2.2451 3.4643 1.3506 7 6 1.4856 4.5566 1.5672 8 8 0.2895 4.4407 1.7308 9 6 2.1227 5.9217 1.6061 10 7 1.0933 6.9341 1.8538 11 6 0.7836 7.2977 3.2345 12 6 0.0539 8.6422 3.2686 13 8 -1.0190 8.6058 2.3201 14 6 -0.5652 8.5666 0.9650 15 6 0.4765 7.4944 0.8060 16 8 0.7650 7.1206 -0.3110 17 6 3.6952 3.5888 1.1497 18 6 4.0736 2.8881 -0.1589 19 6 3.5652 1.4451 -0.1257 20 1 4.0008 0.9263 0.7282 21 7 3.9541 0.7620 -1.3620 22 6 5.1923 0.1863 -1.4658 23 1 5.8818 0.2354 -0.6361 24 6 5.5606 -0.4614 -2.6370 25 7 4.7199 -0.5217 -3.6480 26 14 7.2492 -1.2473 -2.7783 27 1 7.4001 -2.2884 -1.7301 28 1 8.2953 -0.2087 -2.5986 29 1 7.3952 -1.8693 -4.1189 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 0.5533 2.2161 1.3585 36 1 1.9942 1.5364 2.1549 37 1 2.8641 5.9540 2.4044 38 1 2.6080 6.1235 0.6511 39 1 0.1491 6.5300 3.6773 40 1 1.7095 7.3753 3.8046 41 1 -0.3467 8.8157 4.2673 42 1 0.7478 9.4417 3.0088 43 1 -1.4082 8.3568 0.3065 44 1 -0.1301 9.5304 0.7006 45 1 3.9670 4.6428 1.0918 46 1 4.2208 3.1212 1.9823 47 1 5.1577 2.8894 -0.2719 48 1 3.6192 3.4148 -0.9981 49 1 3.3346 0.7175 -2.1071 50 1 3.8429 -0.1139 -3.5744 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037858556.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:39:54 Heat of formation + Delta-G solvation = -119.929833 kcal Electronic energy + Delta-G solvation = -31098.683174 eV Core-core repulsion = 26932.405935 eV Total energy + Delta-G solvation = -4166.277239 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -42.06762 -41.08244 -39.25984 -38.74593 -36.54204 -36.35978 -35.51915 -33.54368 -31.58030 -30.97343 -30.80475 -29.59930 -27.41266 -26.13266 -25.19606 -24.86398 -24.45880 -22.39501 -21.51712 -20.68776 -19.79620 -19.30136 -18.83238 -18.64148 -18.07391 -17.23508 -16.83051 -16.70387 -16.63259 -16.26498 -15.93877 -15.70109 -15.45925 -15.32750 -15.12649 -14.86627 -14.62691 -14.56051 -14.42876 -14.18152 -13.86442 -13.60118 -13.36147 -13.15084 -13.09532 -12.79968 -12.76030 -12.59182 -12.47785 -12.29478 -12.15969 -11.91394 -11.75745 -11.68395 -11.65654 -11.48340 -11.21388 -11.08025 -10.84638 -10.54717 -9.91143 -9.76033 -9.08714 -8.35213 -5.29056 1.21451 1.47395 1.58493 1.61045 1.68639 1.84235 2.05358 2.73129 2.77953 3.24809 3.36885 3.43206 3.62378 3.67108 3.78921 3.88613 3.92478 3.95824 4.11296 4.14475 4.18870 4.21722 4.24854 4.29568 4.34047 4.37060 4.44725 4.51319 4.60405 4.68281 4.70755 4.73418 4.78252 4.85275 4.88013 4.93554 5.01659 5.08001 5.16981 5.25383 5.34025 5.43064 5.54354 5.63236 5.76811 6.19158 6.29658 6.50746 6.84420 7.03348 7.11069 8.00851 8.15781 9.16239 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.018348 B = 0.002618 C = 0.002488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1525.693798 B =10692.469505 C =11249.369860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.105 4.105 3 C -0.095 4.095 4 H 0.040 0.960 5 C 0.128 3.872 6 N -0.606 5.606 7 C 0.495 3.505 8 O -0.579 6.579 9 C 0.091 3.909 10 N -0.587 5.587 11 C 0.073 3.927 12 C 0.041 3.959 13 O -0.386 6.386 14 C 0.060 3.940 15 C 0.479 3.521 16 O -0.588 6.588 17 C 0.115 3.885 18 C -0.145 4.145 19 C 0.185 3.815 20 H 0.052 0.948 21 N -0.745 5.745 22 C -0.318 4.318 23 H 0.072 0.928 24 C -0.109 4.109 25 N -0.980 5.980 26 Si 1.126 2.874 27 H -0.277 1.277 28 H -0.276 1.276 29 H -0.299 1.299 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.040 0.960 33 H 0.042 0.958 34 H 0.069 0.931 35 H 0.079 0.921 36 H 0.087 0.913 37 H 0.158 0.842 38 H 0.108 0.892 39 H 0.064 0.936 40 H 0.126 0.874 41 H 0.143 0.857 42 H 0.086 0.914 43 H 0.128 0.872 44 H 0.120 0.880 45 H 0.109 0.891 46 H 0.098 0.902 47 H 0.070 0.930 48 H 0.035 0.965 49 H 0.354 0.646 50 H 0.241 0.759 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.847 19.758 21.183 29.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.143 4.143 3 C -0.115 4.115 4 H 0.059 0.941 5 C 0.005 3.995 6 N -0.339 5.339 7 C 0.284 3.716 8 O -0.459 6.459 9 C -0.035 4.035 10 N -0.319 5.319 11 C -0.048 4.048 12 C -0.035 4.035 13 O -0.304 6.304 14 C -0.020 4.020 15 C 0.268 3.732 16 O -0.469 6.469 17 C -0.008 4.008 18 C -0.186 4.186 19 C 0.077 3.923 20 H 0.070 0.930 21 N -0.385 5.385 22 C -0.450 4.450 23 H 0.090 0.910 24 C -0.300 4.300 25 N -0.629 5.629 26 Si 0.951 3.049 27 H -0.203 1.203 28 H -0.202 1.202 29 H -0.226 1.226 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.059 0.941 33 H 0.061 0.939 34 H 0.088 0.912 35 H 0.098 0.902 36 H 0.105 0.895 37 H 0.175 0.825 38 H 0.126 0.874 39 H 0.082 0.918 40 H 0.144 0.856 41 H 0.161 0.839 42 H 0.105 0.895 43 H 0.146 0.854 44 H 0.137 0.863 45 H 0.127 0.873 46 H 0.116 0.884 47 H 0.088 0.912 48 H 0.053 0.947 49 H 0.186 0.814 50 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -5.357 18.688 19.997 27.890 hybrid contribution -1.129 0.264 -0.237 1.183 sum -6.486 18.952 19.760 28.138 Atomic orbital electron populations 1.21775 0.94900 1.02048 1.01541 1.21341 0.96031 0.95072 1.01896 1.21654 0.96026 0.96461 0.97373 0.94117 1.21566 0.99064 0.82192 0.96668 1.48263 1.09250 1.06354 1.70038 1.21676 0.86940 0.87548 0.75478 1.90659 1.16497 1.86973 1.51741 1.21595 0.91252 0.83788 1.06834 1.47272 1.38550 1.38237 1.07830 1.22543 1.03119 0.98603 0.80562 1.23319 0.89739 0.94979 0.95452 1.88200 1.32816 1.94784 1.14624 1.22805 0.96695 0.96801 0.85661 1.21761 0.82988 0.84259 0.84173 1.90754 1.65703 1.64368 1.26109 1.21962 0.78453 1.02862 0.97474 1.22472 1.01393 0.97616 0.97090 1.20346 0.92002 0.91287 0.88664 0.93041 1.42643 1.15549 1.66309 1.14023 1.20349 0.93190 1.30204 1.01239 0.91032 1.27133 1.08674 1.01634 0.92568 1.70995 1.08446 1.49871 1.33591 0.82645 0.70923 0.75862 0.75430 1.20299 1.20241 1.22562 0.91722 0.91721 0.94088 0.93932 0.91231 0.90222 0.89469 0.82492 0.87400 0.91782 0.85600 0.83899 0.89543 0.85411 0.86292 0.87282 0.88373 0.91183 0.94650 0.81431 0.94883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.22 9.67 71.98 0.70 -3.53 16 2 C -0.11 -3.56 5.31 30.59 0.16 -3.40 16 3 C -0.09 -3.28 1.92 -10.72 -0.02 -3.30 16 4 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 5 C 0.13 3.70 5.33 86.37 0.46 4.16 16 6 N -0.61 -16.05 2.97 -818.92 -2.43 -18.49 16 7 C 0.50 13.81 7.76 87.65 0.68 14.49 16 8 O -0.58 -20.78 15.84 -3.03 -0.05 -20.82 16 9 C 0.09 1.78 4.12 85.63 0.35 2.13 16 10 N -0.59 -11.54 2.32 -829.01 -1.92 -13.47 16 11 C 0.07 0.80 6.67 86.46 0.58 1.38 16 12 C 0.04 0.32 6.89 71.99 0.50 0.82 16 13 O -0.39 -6.14 10.86 -148.98 -1.62 -7.76 16 14 C 0.06 1.01 6.99 71.12 0.50 1.50 16 15 C 0.48 11.84 7.58 87.68 0.66 12.51 16 16 O -0.59 -20.29 16.38 -3.01 -0.05 -20.34 16 17 C 0.11 2.55 6.34 86.36 0.55 3.09 16 18 C -0.14 -4.78 5.66 30.67 0.17 -4.61 16 19 C 0.19 7.08 2.19 45.01 0.10 7.18 16 20 H 0.05 1.95 8.08 -2.39 -0.02 1.93 16 21 N -0.74 -36.99 4.33 -322.83 -1.40 -38.39 16 22 C -0.32 -17.40 9.93 84.03 0.83 -16.57 16 23 H 0.07 3.74 7.83 -2.91 -0.02 3.71 16 24 C -0.11 -6.33 5.50 84.86 0.47 -5.87 16 25 N -0.98 -62.36 13.70 21.65 0.30 -62.06 16 26 Si 1.13 51.71 29.92 68.60 2.05 53.77 16 27 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 28 H -0.28 -11.68 7.11 99.48 0.71 -10.97 16 29 H -0.30 -14.32 7.11 99.48 0.71 -13.61 16 30 H 0.06 1.69 8.14 -2.38 -0.02 1.67 16 31 H 0.06 1.70 6.70 -2.39 -0.02 1.68 16 32 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.04 1.75 7.22 -2.39 -0.02 1.74 16 34 H 0.07 2.18 8.14 -2.38 -0.02 2.16 16 35 H 0.08 2.51 5.73 -2.39 -0.01 2.49 16 36 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 37 H 0.16 1.43 7.73 -2.39 -0.02 1.41 16 38 H 0.11 2.39 6.83 -2.38 -0.02 2.37 16 39 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 40 H 0.13 0.40 7.99 -2.38 -0.02 0.38 16 41 H 0.14 0.34 8.14 -2.39 -0.02 0.32 16 42 H 0.09 0.33 8.10 -2.39 -0.02 0.31 16 43 H 0.13 2.20 8.14 -2.38 -0.02 2.18 16 44 H 0.12 1.29 8.14 -2.38 -0.02 1.27 16 45 H 0.11 1.73 5.93 -2.38 -0.01 1.72 16 46 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 47 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 48 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 49 H 0.35 19.22 6.34 -92.71 -0.59 18.63 16 50 H 0.24 15.45 6.77 -92.71 -0.63 14.82 16 Total: -1.00 -85.09 392.47 2.06 -83.02 By element: Atomic # 1 Polarization: 34.05 SS G_CDS: 0.50 Total: 34.55 kcal Atomic # 6 Polarization: 3.31 SS G_CDS: 6.69 Total: 9.99 kcal Atomic # 7 Polarization: -126.95 SS G_CDS: -5.46 Total: -132.41 kcal Atomic # 8 Polarization: -47.21 SS G_CDS: -1.71 Total: -48.92 kcal Atomic # 14 Polarization: 51.71 SS G_CDS: 2.05 Total: 53.77 kcal Total: -85.09 2.06 -83.02 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037858556.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.905 kcal (2) G-P(sol) polarization free energy of solvation -85.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds