Wall clock time and date at job start Tue Mar 31 2020 22:31:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 C 1.53002 * 109.47233 * 240.00343 * 2 1 3 5 5 N 1.46503 * 109.46922 * 295.00015 * 4 2 1 6 6 C 1.46768 * 124.34700 * 269.72657 * 5 4 2 7 7 C 1.54657 * 105.38286 * 162.85248 * 6 5 4 8 8 H 1.08995 * 111.19245 * 267.58724 * 7 6 5 9 9 C 1.50704 * 110.85324 * 143.78676 * 7 6 5 10 10 O 1.21281 * 119.99611 * 6.33338 * 9 7 6 11 11 N 1.34774 * 119.99995 * 186.32899 * 9 7 6 12 12 C 1.46503 * 119.99675 * 180.02562 * 11 9 7 13 13 H 1.08992 * 110.88918 * 34.29678 * 12 11 9 14 14 C 1.54911 * 111.00344 * 270.41721 * 12 11 9 15 15 N 1.47469 * 104.81372 * 204.95442 * 14 12 11 16 16 C 1.36935 * 125.62790 * 204.05260 * 15 14 12 17 17 H 1.07996 * 120.00319 * 359.97438 * 16 15 14 18 18 C 1.38819 * 119.99718 * 179.97438 * 16 15 14 19 19 N 1.31612 * 119.99900 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 119.99628 * 179.97438 * 18 16 15 21 21 H 1.48495 * 109.47414 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.46761 * 120.00234 * 20 18 16 23 23 H 1.48504 * 109.47081 * 239.99894 * 20 18 16 24 24 C 1.47022 * 108.72075 * 24.07097 * 15 14 12 25 25 C 1.54326 * 107.27419 * 358.97551 * 24 15 14 26 26 H 1.09001 * 110.72052 * 96.17133 * 25 24 15 27 27 O 1.42899 * 110.87599 * 219.37614 * 25 24 15 28 28 C 1.54629 * 101.68567 * 25.76480 * 7 6 5 29 29 C 1.34413 * 124.35418 * 90.01888 * 5 4 2 30 30 O 1.21289 * 124.94244 * 0.43463 * 29 5 4 31 31 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 32 32 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 34 34 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 35 35 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 36 36 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 37 37 H 1.08996 * 109.47853 * 180.02562 * 3 2 1 38 38 H 1.09000 * 109.47059 * 54.99596 * 4 2 1 39 39 H 1.08996 * 109.47073 * 174.99688 * 4 2 1 40 40 H 1.09001 * 110.24172 * 281.98675 * 6 5 4 41 41 H 1.08999 * 110.24576 * 43.97870 * 6 5 4 42 42 H 0.97002 * 120.00055 * 0.02562 * 11 9 7 43 43 H 1.09009 * 110.36455 * 323.76072 * 14 12 11 44 44 H 1.09004 * 110.36611 * 86.07497 * 14 12 11 45 45 H 0.97008 * 120.00027 * 179.97438 * 19 18 16 46 46 H 1.09003 * 109.88237 * 239.56041 * 24 15 14 47 47 H 1.08995 * 109.88550 * 118.39665 * 24 15 14 48 48 H 0.96700 * 113.99752 * 293.60991 * 27 25 24 49 49 H 1.08994 * 110.48862 * 216.30905 * 28 7 6 50 50 H 1.08998 * 110.48592 * 93.66266 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 1.6525 -2.1328 -1.1907 6 6 2.4714 -3.1921 -0.5895 7 6 1.5056 -4.3787 -0.3633 8 1 1.0720 -4.3487 0.6362 9 6 2.2035 -5.6922 -0.6062 10 8 3.3971 -5.7141 -0.8199 11 7 1.5012 -6.8423 -0.5858 12 6 2.1797 -8.1191 -0.8214 13 1 3.1905 -8.1030 -0.4139 14 6 2.1949 -8.4697 -2.3303 15 7 2.3116 -9.9391 -2.3748 16 6 2.8159 -10.6680 -3.4185 17 1 3.1703 -10.1658 -4.3065 18 6 2.8717 -12.0526 -3.3352 19 7 2.4403 -12.6646 -2.2529 20 14 3.5590 -13.0469 -4.7594 21 1 3.9742 -12.1283 -5.8497 22 1 4.7342 -13.8277 -4.2962 23 1 2.5156 -13.9753 -5.2640 24 6 1.7965 -10.4918 -1.1135 25 6 1.3620 -9.3000 -0.2345 26 1 0.2924 -9.1162 -0.3354 27 8 1.7079 -9.5237 1.1338 28 6 0.4291 -4.1164 -1.4418 29 6 0.5038 -2.6252 -1.6854 30 8 -0.3487 -1.9694 -2.2461 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3634 0.5138 0.8900 34 1 1.8934 -0.5139 0.8900 35 1 1.6766 1.9563 -0.8900 36 1 1.6767 1.9564 0.8899 37 1 3.1299 1.4426 -0.0005 38 1 1.6054 -0.2617 -2.1370 39 1 3.1263 -0.6442 -1.2952 40 1 3.2740 -3.4795 -1.2687 41 1 2.8836 -2.8561 0.3619 42 1 0.5464 -6.8246 -0.4152 43 1 1.2670 -8.1486 -2.8037 44 1 3.0515 -8.0054 -2.8190 45 1 2.4789 -13.6321 -2.1948 46 1 2.5798 -11.0579 -0.6095 47 1 0.9406 -11.1364 -1.3134 48 1 1.2245 -10.2518 1.5477 49 1 -0.5578 -4.3934 -1.0711 50 1 0.6623 -4.6642 -2.3548 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001077087614.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:10 Heat of formation + Delta-G solvation = -96.356056 kcal Electronic energy + Delta-G solvation = -30267.745182 eV Core-core repulsion = 26102.490179 eV Total energy + Delta-G solvation = -4165.255003 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.10709 -39.56495 -37.96108 -36.81853 -35.89035 -35.12654 -34.19217 -32.36363 -31.54986 -28.54369 -27.97452 -27.45318 -27.24601 -26.46563 -24.59071 -23.23380 -20.87184 -20.72971 -20.47566 -20.02754 -19.56809 -17.75580 -17.30575 -17.04756 -16.79035 -15.95631 -15.87336 -15.57079 -15.13969 -14.85825 -14.62323 -14.28679 -14.13052 -14.07318 -13.86935 -13.48814 -13.18387 -13.16659 -12.81606 -12.72011 -12.54735 -12.43190 -12.30387 -12.12877 -11.84934 -11.79714 -11.53770 -11.39915 -11.30904 -11.26235 -11.04972 -10.92666 -10.85759 -10.24455 -10.13440 -9.97273 -9.89188 -9.79369 -9.37514 -8.96534 -8.91985 -8.68265 -6.95823 -5.80176 -3.14776 2.34476 2.57073 2.65228 3.14537 3.36708 3.42781 3.45006 3.95753 4.07046 4.38630 4.45873 4.51309 4.53153 4.56441 4.60788 4.72575 4.93349 5.06152 5.12078 5.15932 5.22950 5.26867 5.33530 5.39529 5.44205 5.45451 5.52133 5.54923 5.58360 5.60227 5.65411 5.74419 5.76265 5.90281 6.00893 6.05240 6.06413 6.25824 6.42407 6.54633 6.79242 6.83538 7.27646 7.42118 7.54013 7.69966 7.92650 8.05310 8.12818 8.22990 9.11267 9.71277 10.33643 11.31654 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.021931 B = 0.002214 C = 0.002134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.421444 B =12642.327466 C =13120.809562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.114 4.114 3 C -0.145 4.145 4 C 0.129 3.871 5 N -0.618 5.618 6 C 0.118 3.882 7 C -0.123 4.123 8 H 0.118 0.882 9 C 0.525 3.475 10 O -0.532 6.532 11 N -0.710 5.710 12 C 0.138 3.862 13 H 0.105 0.895 14 C 0.130 3.870 15 N -0.600 5.600 16 C -0.228 4.228 17 H 0.081 0.919 18 C -0.008 4.008 19 N -0.924 5.924 20 Si 0.915 3.085 21 H -0.279 1.279 22 H -0.290 1.290 23 H -0.290 1.290 24 C 0.153 3.847 25 C 0.068 3.932 26 H 0.058 0.942 27 O -0.563 6.563 28 C -0.148 4.148 29 C 0.521 3.479 30 O -0.527 6.527 31 H 0.057 0.943 32 H 0.053 0.947 33 H 0.050 0.950 34 H 0.072 0.928 35 H 0.057 0.943 36 H 0.058 0.942 37 H 0.056 0.944 38 H 0.083 0.917 39 H 0.080 0.920 40 H 0.093 0.907 41 H 0.084 0.916 42 H 0.398 0.602 43 H 0.024 0.976 44 H 0.050 0.950 45 H 0.253 0.747 46 H 0.061 0.939 47 H 0.049 0.951 48 H 0.377 0.623 49 H 0.110 0.890 50 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.748 22.006 8.538 24.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.134 4.134 3 C -0.203 4.203 4 C 0.008 3.992 5 N -0.352 5.352 6 C -0.005 4.005 7 C -0.145 4.145 8 H 0.136 0.864 9 C 0.309 3.691 10 O -0.408 6.408 11 N -0.360 5.360 12 C 0.033 3.967 13 H 0.123 0.877 14 C 0.003 3.997 15 N -0.328 5.328 16 C -0.356 4.356 17 H 0.099 0.901 18 C -0.204 4.204 19 N -0.571 5.571 20 Si 0.746 3.254 21 H -0.204 1.204 22 H -0.216 1.216 23 H -0.217 1.217 24 C 0.028 3.972 25 C 0.008 3.992 26 H 0.076 0.924 27 O -0.368 6.368 28 C -0.189 4.189 29 C 0.309 3.691 30 O -0.404 6.404 31 H 0.076 0.924 32 H 0.072 0.928 33 H 0.069 0.931 34 H 0.090 0.910 35 H 0.076 0.924 36 H 0.077 0.923 37 H 0.075 0.925 38 H 0.101 0.899 39 H 0.099 0.901 40 H 0.111 0.889 41 H 0.102 0.898 42 H 0.233 0.767 43 H 0.042 0.958 44 H 0.069 0.931 45 H 0.063 0.937 46 H 0.079 0.921 47 H 0.067 0.933 48 H 0.224 0.776 49 H 0.129 0.871 50 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -3.854 22.681 7.903 24.326 hybrid contribution -0.513 -1.213 -0.397 1.375 sum -4.367 21.468 7.505 23.158 Atomic orbital electron populations 1.21795 0.94444 1.02070 1.01533 1.21543 0.96940 0.96383 0.98503 1.21774 1.00957 0.95374 1.02197 1.21509 1.00149 0.78909 0.98662 1.48306 1.20144 1.07949 1.58765 1.22015 0.93389 0.85076 1.00027 1.22274 0.96969 0.93544 1.01679 0.86392 1.19977 0.87381 0.84841 0.76865 1.90744 1.14726 1.86927 1.48392 1.45895 1.11947 1.06215 1.71915 1.22301 0.97515 0.79983 0.96933 0.87708 1.21857 0.99030 0.86798 0.92056 1.44259 1.73475 0.99076 1.15966 1.19131 1.34009 0.88477 0.94000 0.90070 1.24823 1.01262 0.96404 0.97926 1.69926 1.52144 1.08149 1.26898 0.85990 0.78238 0.80034 0.81178 1.20398 1.21648 1.21701 1.21821 0.99085 0.90772 0.85539 1.23457 0.96479 0.96901 0.82340 0.92438 1.86458 1.68983 1.56692 1.24711 1.22391 1.00753 0.94935 1.00783 1.20710 0.81163 0.89745 0.77482 1.90737 1.41612 1.65347 1.42692 0.92366 0.92752 0.93124 0.90956 0.92431 0.92327 0.92486 0.89872 0.90149 0.88867 0.89758 0.76745 0.95836 0.93124 0.93672 0.92078 0.93270 0.77592 0.87132 0.86973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.19 8.35 37.16 0.31 -0.88 16 2 C -0.11 -0.80 3.13 -90.62 -0.28 -1.09 16 3 C -0.15 -0.82 9.19 37.16 0.34 -0.48 16 4 C 0.13 1.02 5.39 -4.04 -0.02 1.00 16 5 N -0.62 -5.71 2.78 -172.30 -0.48 -6.19 16 6 C 0.12 1.03 6.65 -3.03 -0.02 1.01 16 7 C -0.12 -1.06 3.56 -90.04 -0.32 -1.38 16 8 H 0.12 0.75 8.14 -51.93 -0.42 0.33 16 9 C 0.52 6.67 7.07 -10.98 -0.08 6.59 16 10 O -0.53 -8.94 15.26 5.56 0.08 -8.86 16 11 N -0.71 -9.09 5.16 -51.72 -0.27 -9.36 16 12 C 0.14 2.40 3.09 -65.78 -0.20 2.20 16 13 H 0.10 2.13 7.63 -51.93 -0.40 1.74 16 14 C 0.13 2.65 6.93 -2.50 -0.02 2.63 16 15 N -0.60 -14.92 3.40 -170.03 -0.58 -15.50 16 16 C -0.23 -6.26 10.28 -15.06 -0.15 -6.42 16 17 H 0.08 2.17 7.83 -52.49 -0.41 1.76 16 18 C -0.01 -0.22 5.49 -17.43 -0.10 -0.32 16 19 N -0.92 -26.38 10.31 55.49 0.57 -25.80 16 20 Si 0.92 21.86 29.55 -169.99 -5.02 16.84 16 21 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 22 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 23 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 24 C 0.15 3.51 5.15 -3.06 -0.02 3.50 16 25 C 0.07 1.18 3.96 -24.89 -0.10 1.08 16 26 H 0.06 0.86 8.00 -51.93 -0.42 0.44 16 27 O -0.56 -9.11 13.40 -35.23 -0.47 -9.59 16 28 C -0.15 -1.30 6.37 -26.74 -0.17 -1.47 16 29 C 0.52 5.76 6.59 -10.86 -0.07 5.69 16 30 O -0.53 -7.56 16.47 5.55 0.09 -7.47 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.05 0.54 6.14 -51.93 -0.32 0.22 16 33 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 36 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 37 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 38 H 0.08 0.74 7.92 -51.93 -0.41 0.33 16 39 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.09 0.97 7.07 -51.93 -0.37 0.60 16 41 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 42 H 0.40 3.89 8.54 -40.82 -0.35 3.54 16 43 H 0.02 0.46 8.14 -51.92 -0.42 0.04 16 44 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 45 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 46 H 0.06 1.59 7.30 -51.93 -0.38 1.21 16 47 H 0.05 1.22 7.51 -51.93 -0.39 0.83 16 48 H 0.38 4.58 9.12 45.56 0.42 4.99 16 49 H 0.11 0.76 8.14 -51.93 -0.42 0.34 16 50 H 0.11 1.06 7.89 -51.93 -0.41 0.65 16 LS Contribution 399.81 15.07 6.03 6.03 Total: -1.00 -34.42 399.81 -8.58 -43.00 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: -7.64 Total: 5.22 kcal Atomic # 6 Polarization: 12.58 SS G_CDS: -0.90 Total: 11.68 kcal Atomic # 7 Polarization: -56.11 SS G_CDS: -0.75 Total: -56.86 kcal Atomic # 8 Polarization: -25.61 SS G_CDS: -0.30 Total: -25.91 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -34.42 -8.58 -43.00 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077087614.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.354 kcal (2) G-P(sol) polarization free energy of solvation -34.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds