Wall clock time and date at job start Tue Mar 31 2020 23:09:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.46871 * 2 1 4 4 C 1.50699 * 109.46957 * 179.97438 * 3 2 1 5 5 O 1.21282 * 120.00188 * 359.97438 * 4 3 2 6 6 N 1.34774 * 119.99726 * 179.97438 * 4 3 2 7 7 C 1.47022 * 125.64921 * 4.46754 * 6 4 3 8 8 C 1.54327 * 107.26865 * 178.97832 * 7 6 4 9 9 C 1.55162 * 102.94305 * 337.80728 * 8 7 6 10 10 C 1.47429 * 125.64807 * 184.51262 * 6 4 3 11 11 H 1.09000 * 110.45901 * 85.20560 * 10 6 4 12 12 C 1.50708 * 110.36449 * 322.93298 * 10 6 4 13 13 O 1.21281 * 119.99784 * 329.64079 * 12 10 6 14 14 N 1.34773 * 119.99802 * 149.64401 * 12 10 6 15 15 C 1.46500 * 119.99774 * 179.97438 * 14 12 10 16 16 H 1.08998 * 110.88567 * 37.42788 * 15 14 12 17 17 C 1.54917 * 111.00662 * 273.54837 * 15 14 12 18 18 N 1.47422 * 104.82891 * 204.87620 * 17 15 14 19 19 C 1.36938 * 125.64443 * 204.08867 * 18 17 15 20 20 H 1.07998 * 120.00380 * 349.53587 * 19 18 17 21 21 C 1.38818 * 119.99888 * 169.53512 * 19 18 17 22 22 N 1.31609 * 120.00096 * 166.38817 * 21 19 18 23 23 Si 1.86802 * 119.99688 * 346.11464 * 21 19 18 24 24 H 1.48504 * 109.46816 * 184.35766 * 23 21 19 25 25 H 1.48502 * 109.47019 * 304.35260 * 23 21 19 26 26 H 1.48500 * 109.47444 * 64.35381 * 23 21 19 27 27 C 1.47025 * 108.70600 * 24.36026 * 18 17 15 28 28 C 1.54334 * 107.26548 * 358.57821 * 27 18 17 29 29 H 1.08998 * 110.51186 * 96.45255 * 28 27 18 30 30 O 1.42895 * 111.00396 * 219.60706 * 28 27 18 31 31 H 1.09007 * 109.46788 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47216 * 299.99473 * 1 2 3 33 33 H 1.08994 * 109.47652 * 60.00175 * 1 2 3 34 34 H 1.08995 * 109.47081 * 239.99713 * 2 1 3 35 35 H 1.09007 * 109.47497 * 119.99509 * 2 1 3 36 36 H 1.08994 * 109.47014 * 59.99774 * 3 2 1 37 37 H 1.08998 * 109.46651 * 299.99834 * 3 2 1 38 38 H 1.08991 * 109.88275 * 59.56453 * 7 6 4 39 39 H 1.08991 * 109.88406 * 298.39521 * 7 6 4 40 40 H 1.09003 * 110.71905 * 219.44413 * 8 7 6 41 41 H 1.09003 * 110.87506 * 96.24546 * 8 7 6 42 42 H 1.09001 * 111.00157 * 277.42552 * 9 8 7 43 43 H 1.08995 * 111.03519 * 153.59568 * 9 8 7 44 44 H 0.96996 * 119.99996 * 359.97438 * 14 12 10 45 45 H 1.09003 * 110.36263 * 86.03780 * 17 15 14 46 46 H 1.08995 * 110.36607 * 323.71753 * 17 15 14 47 47 H 0.97000 * 120.00237 * 354.60080 * 22 21 19 48 48 H 1.08996 * 109.88272 * 118.12523 * 27 18 17 49 49 H 1.08999 * 109.87832 * 239.29493 * 27 18 17 50 50 H 0.96699 * 113.99597 * 293.77876 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5469 1.4426 0.0006 5 8 4.1534 0.3923 0.0015 6 7 4.2207 2.6098 0.0002 7 6 3.6175 3.9474 0.0922 8 6 4.7715 4.9721 0.0804 9 6 5.9874 4.1317 0.5525 10 6 5.6847 2.7568 -0.0935 11 1 6.0023 2.7493 -1.1362 12 6 6.3724 1.6552 0.6712 13 8 5.8403 1.1714 1.6478 14 7 7.5787 1.2077 0.2698 15 6 8.2474 0.1373 1.0135 16 1 7.5262 -0.5997 1.3667 17 6 9.0756 0.7119 2.1898 18 7 10.1214 -0.2959 2.4428 19 6 10.7847 -0.4778 3.6269 20 1 10.6817 0.2475 4.4205 21 6 11.5894 -1.5944 3.8073 22 7 12.4298 -1.6434 4.8189 23 14 11.4740 -3.0307 2.6184 24 1 12.3526 -4.1326 3.0867 25 1 10.0698 -3.5098 2.5559 26 1 11.9078 -2.5915 1.2678 27 6 10.3388 -1.0691 1.2113 28 6 9.3513 -0.5329 0.1534 29 1 9.8396 0.2012 -0.4875 30 8 8.8069 -1.5995 -0.6263 31 1 -0.3633 -1.0278 0.0005 32 1 -0.3634 0.5138 0.8901 33 1 -0.3634 0.5138 -0.8899 34 1 1.8933 -0.5139 -0.8899 35 1 1.8934 -0.5138 0.8901 36 1 1.6765 1.9563 0.8899 37 1 1.6766 1.9563 -0.8900 38 1 3.0525 4.0362 1.0200 39 1 2.9617 4.1179 -0.7614 40 1 4.5714 5.7862 0.7771 41 1 4.9371 5.3590 -0.9251 42 1 6.0114 4.0560 1.6396 43 1 6.9208 4.5457 0.1712 44 1 8.0040 1.5945 -0.5115 45 1 8.4468 0.8357 3.0715 46 1 9.5261 1.6634 1.9074 47 1 12.5440 -0.8696 5.3925 48 1 11.3639 -0.9355 0.8658 49 1 10.1426 -2.1251 1.3972 50 1 9.4564 -2.0515 -1.1822 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078222898.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:09:08 Heat of formation + Delta-G solvation = -80.346977 kcal Electronic energy + Delta-G solvation = -31049.015532 eV Core-core repulsion = 26884.454734 eV Total energy + Delta-G solvation = -4164.560797 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -40.81964 -39.23462 -38.10402 -37.29064 -35.32288 -34.53146 -34.07437 -32.11455 -31.89350 -30.24723 -28.50917 -27.99314 -27.68015 -24.50159 -23.71367 -22.15165 -21.99356 -21.14500 -20.67944 -20.10963 -19.16213 -17.85671 -17.54113 -17.18998 -17.05128 -16.15144 -15.92932 -15.77735 -15.11489 -14.83930 -14.53124 -14.29352 -14.16253 -13.80034 -13.70272 -13.58116 -13.47487 -13.15629 -13.00821 -12.75603 -12.65481 -12.31096 -12.22489 -12.09817 -11.90357 -11.81447 -11.78484 -11.52172 -11.35304 -11.23875 -11.16390 -10.93026 -10.59939 -10.16528 -9.96946 -9.80776 -9.68966 -9.25916 -9.01112 -8.86189 -8.72722 -8.67879 -7.06728 -6.31090 -3.23910 2.46700 2.63870 2.98940 3.30527 3.37715 3.54587 3.72837 4.05582 4.17732 4.33062 4.47007 4.55967 4.62254 4.66750 4.74390 4.78982 4.82978 4.88567 4.96786 5.15953 5.22986 5.24090 5.24798 5.30095 5.33153 5.35141 5.37067 5.42522 5.47616 5.49758 5.52163 5.75122 5.81065 5.87023 5.91703 5.95379 5.98619 6.15764 6.35798 6.40886 6.47497 6.60495 6.80016 7.30440 7.62318 7.69181 7.84044 8.12970 8.32543 8.49075 9.02843 9.52744 10.18344 11.19508 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.014809 B = 0.002976 C = 0.002732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1890.243358 B = 9407.055199 C =10245.105059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.112 4.112 3 C -0.130 4.130 4 C 0.525 3.475 5 O -0.508 6.508 6 N -0.611 5.611 7 C 0.103 3.897 8 C -0.129 4.129 9 C -0.122 4.122 10 C 0.119 3.881 11 H 0.091 0.909 12 C 0.518 3.482 13 O -0.512 6.512 14 N -0.715 5.715 15 C 0.143 3.857 16 H 0.105 0.895 17 C 0.132 3.868 18 N -0.607 5.607 19 C -0.321 4.321 20 H 0.081 0.919 21 C -0.021 4.021 22 N -0.927 5.927 23 Si 1.071 2.929 24 H -0.301 1.301 25 H -0.294 1.294 26 H -0.289 1.289 27 C 0.084 3.916 28 C 0.087 3.913 29 H 0.068 0.932 30 O -0.556 6.556 31 H 0.057 0.943 32 H 0.054 0.946 33 H 0.053 0.947 34 H 0.069 0.931 35 H 0.072 0.928 36 H 0.090 0.910 37 H 0.089 0.911 38 H 0.070 0.930 39 H 0.071 0.929 40 H 0.087 0.913 41 H 0.080 0.920 42 H 0.086 0.914 43 H 0.092 0.908 44 H 0.394 0.606 45 H 0.056 0.944 46 H 0.029 0.971 47 H 0.262 0.738 48 H 0.051 0.949 49 H 0.043 0.957 50 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.975 15.176 -17.098 30.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.150 4.150 3 C -0.170 4.170 4 C 0.313 3.687 5 O -0.382 6.382 6 N -0.349 5.349 7 C -0.020 4.020 8 C -0.167 4.167 9 C -0.161 4.161 10 C 0.011 3.989 11 H 0.109 0.891 12 C 0.302 3.698 13 O -0.385 6.385 14 N -0.367 5.367 15 C 0.037 3.963 16 H 0.122 0.878 17 C 0.004 3.996 18 N -0.336 5.336 19 C -0.448 4.448 20 H 0.099 0.901 21 C -0.220 4.220 22 N -0.569 5.569 23 Si 0.905 3.095 24 H -0.229 1.229 25 H -0.223 1.223 26 H -0.217 1.217 27 C -0.041 4.041 28 C 0.027 3.973 29 H 0.086 0.914 30 O -0.361 6.361 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.087 0.913 35 H 0.090 0.910 36 H 0.109 0.891 37 H 0.108 0.892 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.106 0.894 41 H 0.099 0.901 42 H 0.104 0.896 43 H 0.111 0.889 44 H 0.228 0.772 45 H 0.074 0.926 46 H 0.047 0.953 47 H 0.072 0.928 48 H 0.069 0.931 49 H 0.060 0.940 50 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -20.060 12.786 -16.254 28.811 hybrid contribution 0.172 1.705 -0.371 1.754 sum -19.888 14.491 -16.625 29.697 Atomic orbital electron populations 1.21781 0.95489 1.01996 1.01569 1.21305 0.95155 0.94640 1.03874 1.21655 0.91220 1.00201 1.03918 1.20472 0.90093 0.82151 0.75949 1.90807 1.69854 1.30203 1.47301 1.48339 1.05217 1.06261 1.75060 1.22023 0.96404 0.81663 1.01885 1.22633 0.93897 0.97438 1.02737 1.22769 0.99185 0.91936 1.02172 1.21808 0.82342 0.94985 0.99727 0.89117 1.20209 0.80965 0.83361 0.85297 1.90723 1.64013 1.56944 1.26845 1.45748 1.19922 1.39038 1.31971 1.22218 0.93775 0.88855 0.91455 0.87751 1.21915 0.89604 0.92478 0.95566 1.44619 1.42377 1.38459 1.08100 1.20199 1.24440 1.08705 0.91434 0.90122 1.25866 0.95407 0.99758 1.01010 1.70885 1.34778 1.32924 1.18284 0.83836 0.75015 0.76292 0.74337 1.22890 1.22313 1.21681 1.22699 0.97269 0.96353 0.87805 1.23055 0.93768 0.88748 0.91760 0.91403 1.86573 1.39080 1.49817 1.60601 0.92353 0.92719 0.92831 0.91253 0.90959 0.89139 0.89239 0.91145 0.91050 0.89437 0.90112 0.89576 0.88909 0.77213 0.92590 0.95311 0.92805 0.93126 0.94012 0.77676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.91 37.16 0.37 -0.74 16 2 C -0.11 -1.13 5.22 -26.73 -0.14 -1.27 16 3 C -0.13 -1.19 4.90 -27.88 -0.14 -1.33 16 4 C 0.52 7.13 7.28 -10.99 -0.08 7.05 16 5 O -0.51 -9.53 13.67 -16.63 -0.23 -9.75 16 6 N -0.61 -6.78 3.12 -164.35 -0.51 -7.29 16 7 C 0.10 0.67 6.49 -3.06 -0.02 0.65 16 8 C -0.13 -0.66 6.95 -24.89 -0.17 -0.83 16 9 C -0.12 -0.97 6.49 -24.58 -0.16 -1.13 16 10 C 0.12 1.32 3.56 -67.57 -0.24 1.08 16 11 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 12 C 0.52 8.41 5.68 -10.98 -0.06 8.34 16 13 O -0.51 -10.81 14.60 -16.63 -0.24 -11.05 16 14 N -0.72 -10.98 5.23 -51.72 -0.27 -11.25 16 15 C 0.14 2.77 3.04 -65.78 -0.20 2.57 16 16 H 0.10 2.44 7.73 -51.93 -0.40 2.04 16 17 C 0.13 2.87 6.93 -2.53 -0.02 2.85 16 18 N -0.61 -15.55 3.33 -170.06 -0.57 -16.11 16 19 C -0.32 -9.52 10.57 -15.06 -0.16 -9.68 16 20 H 0.08 2.51 8.06 -52.49 -0.42 2.09 16 21 C -0.02 -0.64 5.50 -17.43 -0.10 -0.74 16 22 N -0.93 -29.77 13.70 55.49 0.76 -29.01 16 23 Si 1.07 27.71 24.55 -169.99 -4.17 23.54 16 24 H -0.30 -7.89 7.11 56.52 0.40 -7.49 16 25 H -0.29 -7.62 6.86 56.52 0.39 -7.23 16 26 H -0.29 -6.64 5.40 56.52 0.31 -6.33 16 27 C 0.08 1.89 4.41 -3.06 -0.01 1.87 16 28 C 0.09 1.55 3.94 -24.89 -0.10 1.45 16 29 H 0.07 0.99 8.00 -51.93 -0.42 0.58 16 30 O -0.56 -9.43 13.40 -35.23 -0.47 -9.90 16 31 H 0.06 0.42 8.14 -51.92 -0.42 0.00 16 32 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 34 H 0.07 0.77 8.10 -51.93 -0.42 0.35 16 35 H 0.07 0.90 8.10 -51.92 -0.42 0.48 16 36 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 37 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 40 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 41 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 42 H 0.09 0.85 8.05 -51.93 -0.42 0.44 16 43 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.39 4.57 8.52 -40.82 -0.35 4.22 16 45 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 46 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 47 H 0.26 8.29 8.73 -40.82 -0.36 7.93 16 48 H 0.05 1.12 6.87 -51.93 -0.36 0.77 16 49 H 0.04 1.02 3.57 -51.93 -0.19 0.83 16 50 H 0.38 4.52 9.12 45.56 0.42 4.93 16 LS Contribution 392.53 15.07 5.92 5.92 Total: -1.00 -40.88 392.53 -8.75 -49.63 By element: Atomic # 1 Polarization: 12.88 SS G_CDS: -7.73 Total: 5.15 kcal Atomic # 6 Polarization: 11.38 SS G_CDS: -1.23 Total: 10.15 kcal Atomic # 7 Polarization: -63.08 SS G_CDS: -0.59 Total: -63.67 kcal Atomic # 8 Polarization: -29.77 SS G_CDS: -0.94 Total: -30.71 kcal Atomic # 14 Polarization: 27.71 SS G_CDS: -4.17 Total: 23.54 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -40.88 -8.75 -49.63 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078222898.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.721 kcal (2) G-P(sol) polarization free energy of solvation -40.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds