Wall clock time and date at job start Tue Mar 31 2020 23:09:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.47046 * 2 1 4 4 C 1.50699 * 109.47372 * 180.02562 * 3 2 1 5 5 O 1.21282 * 119.99724 * 0.02562 * 4 3 2 6 6 N 1.34768 * 120.00059 * 180.02562 * 4 3 2 7 7 C 1.47423 * 125.65333 * 359.95740 * 6 4 3 8 8 C 1.54906 * 104.83596 * 204.16646 * 7 6 4 9 9 C 1.55157 * 101.58076 * 322.98987 * 8 7 6 10 10 C 1.47026 * 125.64927 * 180.02562 * 6 4 3 11 11 H 1.09011 * 109.87718 * 298.47214 * 10 6 4 12 12 C 1.50696 * 109.88370 * 59.48029 * 10 6 4 13 13 O 1.21279 * 119.99977 * 0.02562 * 12 10 6 14 14 N 1.34777 * 120.00032 * 179.97438 * 12 10 6 15 15 C 1.46498 * 119.99972 * 180.02562 * 14 12 10 16 16 H 1.08997 * 110.78345 * 31.76049 * 15 14 12 17 17 C 1.54327 * 110.72076 * 268.52135 * 15 14 12 18 18 N 1.47017 * 107.27319 * 219.44475 * 17 15 14 19 19 C 1.36943 * 125.64774 * 178.99971 * 18 17 15 20 20 H 1.08005 * 119.99717 * 359.97438 * 19 18 17 21 21 C 1.38807 * 119.99774 * 180.02562 * 19 18 17 22 22 N 1.31620 * 120.00266 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 119.99681 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47326 * 359.97438 * 23 21 19 25 25 H 1.48506 * 109.47606 * 119.99801 * 23 21 19 26 26 H 1.48504 * 109.47289 * 239.99488 * 23 21 19 27 27 C 1.47462 * 108.72445 * 358.97824 * 18 17 15 28 28 C 1.54906 * 104.81164 * 24.06792 * 27 18 17 29 29 H 1.09002 * 111.00329 * 81.14000 * 28 27 18 30 30 O 1.42905 * 111.00760 * 204.95165 * 28 27 18 31 31 H 1.08998 * 109.47328 * 59.99462 * 1 2 3 32 32 H 1.08997 * 109.46794 * 179.97438 * 1 2 3 33 33 H 1.09006 * 109.47090 * 299.99056 * 1 2 3 34 34 H 1.09006 * 109.47090 * 240.00944 * 2 1 3 35 35 H 1.08998 * 109.47801 * 120.00781 * 2 1 3 36 36 H 1.09006 * 109.46405 * 60.00525 * 3 2 1 37 37 H 1.08998 * 109.47496 * 300.00435 * 3 2 1 38 38 H 1.09002 * 110.36275 * 323.00624 * 7 6 4 39 39 H 1.09002 * 110.36744 * 85.21629 * 7 6 4 40 40 H 1.09000 * 111.00325 * 81.06869 * 8 7 6 41 41 H 1.09005 * 111.00339 * 204.91639 * 8 7 6 42 42 H 1.09000 * 110.71857 * 277.13422 * 9 8 7 43 43 H 1.09001 * 110.71778 * 153.86800 * 9 8 7 44 44 H 0.97000 * 120.00263 * 0.02562 * 14 12 10 45 45 H 1.08998 * 109.88329 * 338.86676 * 17 15 14 46 46 H 1.09004 * 109.87954 * 99.87229 * 17 15 14 47 47 H 0.97004 * 119.99470 * 180.02562 * 22 21 19 48 48 H 1.09007 * 110.34634 * 265.25540 * 27 18 17 49 49 H 1.08993 * 110.40740 * 142.91679 * 27 18 17 50 50 H 0.96697 * 113.99904 * 295.42246 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5469 1.4426 -0.0006 5 8 4.1534 0.3923 -0.0015 6 7 4.2207 2.6098 -0.0002 7 6 3.6129 3.9529 -0.0001 8 6 4.6942 4.8777 -0.6126 9 6 5.9948 4.2659 -0.0282 10 6 5.6838 2.7546 -0.0013 11 1 6.1015 2.3040 0.8992 12 6 6.2638 2.0899 -1.2231 13 8 5.5318 1.5453 -2.0222 14 7 7.5958 2.1015 -1.4284 15 6 8.1595 1.4559 -2.6164 16 1 7.4661 1.5164 -3.4552 17 6 8.5273 -0.0127 -2.3170 18 7 9.7971 -0.2932 -3.0029 19 6 10.4751 -1.4826 -2.9720 20 1 10.0807 -2.3145 -2.4073 21 6 11.6698 -1.6186 -3.6655 22 7 12.1507 -0.6047 -4.3532 23 14 12.5943 -3.2413 -3.6239 24 1 11.8482 -4.2148 -2.7867 25 1 12.7243 -3.7726 -5.0045 26 1 13.9457 -3.0264 -3.0470 27 6 10.2199 0.9179 -3.7302 28 6 9.5270 2.0877 -2.9879 29 1 10.0840 2.3675 -2.0936 30 8 9.3537 3.2122 -3.8526 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5137 0.8901 34 1 1.8933 -0.5137 -0.8901 35 1 1.8934 -0.5139 0.8899 36 1 1.6766 1.9563 0.8901 37 1 1.6766 1.9564 -0.8899 38 1 2.7131 3.9620 -0.6152 39 1 3.3786 4.2631 1.0183 40 1 4.6887 4.8175 -1.7010 41 1 4.5624 5.9070 -0.2792 42 1 6.1783 4.6402 0.9789 43 1 6.8445 4.4731 -0.6786 44 1 8.1812 2.5374 -0.7895 45 1 8.6473 -0.1533 -1.2428 46 1 7.7466 -0.6743 -2.6923 47 1 12.9855 -0.7000 -4.8381 48 1 9.8841 0.8743 -4.7664 49 1 11.3032 1.0291 -3.6860 50 1 10.1828 3.6104 -4.1509 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001078222899.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:09:11 Heat of formation + Delta-G solvation = -120.385877 kcal Electronic energy + Delta-G solvation = -30861.221794 eV Core-core repulsion = 26694.924779 eV Total energy + Delta-G solvation = -4166.297014 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.84104 -40.47727 -39.33846 -38.13878 -36.72466 -35.64140 -35.31510 -33.77149 -32.67579 -31.08898 -29.97607 -28.85767 -28.44672 -26.45353 -24.93697 -23.29015 -22.69244 -22.44801 -21.85504 -21.25832 -20.14193 -19.17907 -18.55448 -18.33701 -18.12405 -17.38712 -16.94224 -16.75152 -16.32886 -16.22028 -15.73192 -15.47219 -15.25306 -14.94967 -14.87344 -14.55641 -14.38646 -14.25116 -14.03773 -13.77108 -13.70508 -13.55555 -13.27180 -13.17767 -12.89668 -12.87283 -12.78372 -12.68467 -12.31498 -12.24471 -12.06330 -11.99946 -11.98311 -11.96742 -11.66981 -11.48753 -11.16924 -10.89903 -10.85887 -10.81186 -10.20418 -9.68533 -9.03679 -7.87299 -5.34156 1.43651 1.45190 1.54096 1.56612 1.58917 1.92294 2.19356 2.43322 3.02905 3.23808 3.40562 3.55922 3.58141 3.66996 3.80046 3.83327 3.96809 4.00004 4.04869 4.09460 4.15623 4.28890 4.35565 4.50089 4.54530 4.56361 4.65583 4.67173 4.75552 4.76727 4.83762 4.85045 4.89664 4.94230 5.06636 5.19895 5.23501 5.24760 5.32276 5.33105 5.38117 5.41139 5.43558 5.62189 6.15787 6.44680 6.55079 6.84320 7.00145 7.17381 7.27547 7.62469 8.25173 9.14704 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.013901 B = 0.002848 C = 0.002461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2013.805956 B = 9828.208263 C =11372.478635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.112 4.112 3 C -0.121 4.121 4 C 0.517 3.483 5 O -0.584 6.584 6 N -0.610 5.610 7 C 0.094 3.906 8 C -0.130 4.130 9 C -0.115 4.115 10 C 0.116 3.884 11 H 0.106 0.894 12 C 0.500 3.500 13 O -0.572 6.572 14 N -0.702 5.702 15 C 0.160 3.840 16 H 0.070 0.930 17 C 0.133 3.867 18 N -0.618 5.618 19 C -0.248 4.248 20 H 0.075 0.925 21 C -0.059 4.059 22 N -0.945 5.945 23 Si 0.985 3.015 24 H -0.272 1.272 25 H -0.290 1.290 26 H -0.281 1.281 27 C 0.133 3.867 28 C 0.096 3.904 29 H 0.091 0.909 30 O -0.566 6.566 31 H 0.062 0.938 32 H 0.056 0.944 33 H 0.074 0.926 34 H 0.035 0.965 35 H 0.054 0.946 36 H 0.127 0.873 37 H 0.106 0.894 38 H 0.089 0.911 39 H 0.108 0.892 40 H 0.054 0.946 41 H 0.126 0.874 42 H 0.126 0.874 43 H 0.088 0.912 44 H 0.416 0.584 45 H 0.035 0.965 46 H 0.001 0.999 47 H 0.252 0.748 48 H -0.010 1.010 49 H 0.095 0.905 50 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.259 18.594 13.995 29.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.151 4.151 3 C -0.161 4.161 4 C 0.308 3.692 5 O -0.463 6.463 6 N -0.344 5.344 7 C -0.027 4.027 8 C -0.168 4.168 9 C -0.153 4.153 10 C 0.008 3.992 11 H 0.124 0.876 12 C 0.286 3.714 13 O -0.450 6.450 14 N -0.355 5.355 15 C 0.053 3.947 16 H 0.088 0.912 17 C 0.006 3.994 18 N -0.346 5.346 19 C -0.377 4.377 20 H 0.093 0.907 21 C -0.251 4.251 22 N -0.594 5.594 23 Si 0.813 3.187 24 H -0.197 1.197 25 H -0.217 1.217 26 H -0.208 1.208 27 C 0.007 3.993 28 C 0.036 3.964 29 H 0.109 0.891 30 O -0.373 6.373 31 H 0.081 0.919 32 H 0.075 0.925 33 H 0.093 0.907 34 H 0.054 0.946 35 H 0.072 0.928 36 H 0.145 0.855 37 H 0.124 0.876 38 H 0.107 0.893 39 H 0.126 0.874 40 H 0.073 0.927 41 H 0.144 0.856 42 H 0.145 0.855 43 H 0.106 0.894 44 H 0.253 0.747 45 H 0.053 0.947 46 H 0.019 0.981 47 H 0.062 0.938 48 H 0.008 0.992 49 H 0.113 0.887 50 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -19.001 17.364 13.458 29.046 hybrid contribution 1.635 -1.387 -0.619 2.232 sum -17.365 15.978 12.839 26.864 Atomic orbital electron populations 1.21730 0.92884 1.02417 1.03004 1.21274 0.97305 0.95102 1.01381 1.21703 0.88208 0.99896 1.06275 1.21261 0.91758 0.81820 0.74404 1.90716 1.71698 1.32844 1.51050 1.48512 1.05154 1.07465 1.73297 1.22738 0.97371 0.79232 1.03311 1.22849 0.92934 1.00906 1.00080 1.22786 0.99617 0.87578 1.05294 1.21701 0.83182 0.99730 0.94556 0.87638 1.21713 0.82069 0.79256 0.88342 1.90683 1.60408 1.45725 1.48189 1.45702 1.07263 1.57414 1.25116 1.21427 0.94283 0.90819 0.88128 0.91196 1.21622 0.87660 0.94164 0.95970 1.44567 1.21720 1.10940 1.57332 1.19457 1.02286 0.89602 1.26334 0.90668 1.25639 0.98715 1.01724 0.99071 1.69953 1.21968 1.30873 1.36563 0.84920 0.78190 0.78474 0.77135 1.19698 1.21717 1.20753 1.22423 1.01074 0.83972 0.91802 1.23217 0.93713 0.86215 0.93301 0.89131 1.86379 1.37116 1.45607 1.68244 0.91862 0.92529 0.90690 0.94596 0.92750 0.85474 0.87579 0.89280 0.87440 0.92711 0.85551 0.85543 0.89381 0.74683 0.94675 0.98097 0.93773 0.99189 0.88730 0.75164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.98 9.91 71.98 0.71 -1.27 16 2 C -0.11 -2.41 5.22 30.59 0.16 -2.25 16 3 C -0.12 -2.20 4.71 29.85 0.14 -2.06 16 4 C 0.52 14.70 6.99 87.66 0.61 15.32 16 5 O -0.58 -23.69 15.06 13.10 0.20 -23.49 16 6 N -0.61 -13.50 2.88 -792.20 -2.28 -15.78 16 7 C 0.09 1.01 6.69 86.85 0.58 1.59 16 8 C -0.13 -1.28 7.08 31.99 0.23 -1.06 16 9 C -0.11 -1.34 6.45 31.78 0.20 -1.14 16 10 C 0.12 2.61 3.29 44.59 0.15 2.76 16 11 H 0.11 2.25 8.14 -2.38 -0.02 2.23 16 12 C 0.50 16.86 6.70 87.66 0.59 17.44 16 13 O -0.57 -25.59 14.51 13.11 0.19 -25.40 16 14 N -0.70 -22.23 4.79 -436.92 -2.09 -24.33 16 15 C 0.16 6.54 3.05 46.18 0.14 6.69 16 16 H 0.07 3.30 7.55 -2.39 -0.02 3.29 16 17 C 0.13 6.49 6.99 86.73 0.61 7.10 16 18 N -0.62 -34.02 3.40 -691.90 -2.35 -36.37 16 19 C -0.25 -14.65 10.27 84.03 0.86 -13.79 16 20 H 0.08 4.38 7.83 -2.91 -0.02 4.35 16 21 C -0.06 -3.37 5.49 84.86 0.47 -2.90 16 22 N -0.94 -55.68 10.09 21.65 0.22 -55.46 16 23 Si 0.99 46.46 29.55 68.60 2.03 48.49 16 24 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 25 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 26 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 27 C 0.13 6.66 5.62 86.85 0.49 7.15 16 28 C 0.10 3.63 4.05 31.99 0.13 3.76 16 29 H 0.09 2.96 8.01 -2.39 -0.02 2.94 16 30 O -0.57 -18.68 13.47 -148.98 -2.01 -20.68 16 31 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.07 0.74 8.14 -2.38 -0.02 0.72 16 34 H 0.04 1.00 8.10 -2.38 -0.02 0.98 16 35 H 0.05 1.29 8.10 -2.39 -0.02 1.27 16 36 H 0.13 1.32 8.14 -2.38 -0.02 1.30 16 37 H 0.11 1.61 7.85 -2.39 -0.02 1.59 16 38 H 0.09 0.78 7.48 -2.39 -0.02 0.76 16 39 H 0.11 0.47 8.14 -2.39 -0.02 0.45 16 40 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 41 H 0.13 0.36 8.14 -2.38 -0.02 0.34 16 42 H 0.13 0.61 8.14 -2.39 -0.02 0.59 16 43 H 0.09 1.13 7.48 -2.39 -0.02 1.11 16 44 H 0.42 9.79 8.43 -92.71 -0.78 9.01 16 45 H 0.04 1.67 8.03 -2.39 -0.02 1.65 16 46 H 0.00 0.05 8.14 -2.38 -0.02 0.03 16 47 H 0.25 14.25 8.31 -92.71 -0.77 13.48 16 48 H -0.01 -0.55 8.14 -2.38 -0.02 -0.57 16 49 H 0.09 5.09 5.88 -2.39 -0.01 5.08 16 50 H 0.40 9.60 9.12 -74.06 -0.68 8.93 16 Total: -1.00 -90.05 399.32 -0.53 -90.58 By element: Atomic # 1 Polarization: 25.62 SS G_CDS: -0.51 Total: 25.12 kcal Atomic # 6 Polarization: 31.26 SS G_CDS: 6.07 Total: 37.33 kcal Atomic # 7 Polarization: -125.44 SS G_CDS: -6.50 Total: -131.94 kcal Atomic # 8 Polarization: -67.96 SS G_CDS: -1.62 Total: -69.57 kcal Atomic # 14 Polarization: 46.46 SS G_CDS: 2.03 Total: 48.49 kcal Total: -90.05 -0.53 -90.58 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078222899.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.808 kcal (2) G-P(sol) polarization free energy of solvation -90.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds