Wall clock time and date at job start Tue Mar 31 2020 23:32:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.46985 * 2 1 4 4 H 1.09003 * 109.99636 * 54.88547 * 3 2 1 5 5 C 1.54332 * 109.99219 * 293.84990 * 3 2 1 6 6 C 1.55161 * 103.02306 * 218.66291 * 5 3 2 7 7 C 1.54910 * 101.57859 * 35.30347 * 6 5 3 8 8 N 1.47022 * 109.88559 * 175.97772 * 3 2 1 9 9 C 1.34767 * 125.65007 * 298.39752 * 8 3 2 10 10 O 1.21350 * 120.00230 * 354.67242 * 9 8 3 11 11 C 1.49451 * 120.00199 * 174.67226 * 9 8 3 12 12 O 1.21351 * 120.00043 * 0.02562 * 11 9 8 13 13 N 1.34776 * 120.00429 * 180.02562 * 11 9 8 14 14 C 1.46497 * 120.00445 * 179.72159 * 13 11 9 15 15 H 1.08997 * 110.88269 * 34.57504 * 14 13 11 16 16 C 1.54903 * 111.00714 * 270.69691 * 14 13 11 17 17 N 1.47469 * 104.81350 * 204.94969 * 16 14 13 18 18 C 1.36935 * 125.62752 * 204.06893 * 17 16 14 19 19 H 1.08002 * 120.00349 * 359.97438 * 18 17 16 20 20 C 1.38818 * 119.99859 * 179.97438 * 18 17 16 21 21 N 1.31617 * 119.99777 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00072 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.46849 * 0.02562 * 22 20 18 24 24 H 1.48496 * 109.46965 * 120.00245 * 22 20 18 25 25 H 1.48505 * 109.47034 * 240.00677 * 22 20 18 26 26 C 1.47018 * 108.72267 * 24.06575 * 17 16 14 27 27 C 1.54332 * 107.27053 * 358.97785 * 26 17 16 28 28 H 1.09002 * 110.86863 * 96.24014 * 27 26 17 29 29 O 1.42894 * 110.72107 * 219.44254 * 27 26 17 30 30 C 1.42905 * 114.00007 * 263.52279 * 29 27 26 31 31 H 1.08998 * 109.47295 * 305.72010 * 1 2 3 32 32 H 1.08997 * 109.47191 * 65.72320 * 1 2 3 33 33 H 1.09006 * 109.46867 * 185.71814 * 1 2 3 34 34 H 1.09000 * 109.47696 * 240.00157 * 2 1 3 35 35 H 1.08998 * 109.47580 * 119.99789 * 2 1 3 36 36 H 1.08997 * 110.85670 * 100.19299 * 5 3 2 37 37 H 1.09002 * 110.66949 * 337.04411 * 5 3 2 38 38 H 1.08999 * 111.00353 * 277.23530 * 6 5 3 39 39 H 1.08995 * 111.00697 * 153.37719 * 6 5 3 40 40 H 1.08997 * 110.36804 * 204.15137 * 7 6 5 41 41 H 1.09003 * 110.46130 * 81.87725 * 7 6 5 42 42 H 0.97003 * 119.99311 * 0.02562 * 13 11 9 43 43 H 1.09005 * 110.36476 * 323.75247 * 16 14 13 44 44 H 1.09003 * 110.37025 * 86.07141 * 16 14 13 45 45 H 0.97002 * 119.99904 * 179.97438 * 21 20 18 46 46 H 1.08993 * 109.88438 * 239.56405 * 26 17 16 47 47 H 1.08997 * 109.88210 * 118.39057 * 26 17 16 48 48 H 1.09003 * 109.47142 * 180.02562 * 30 29 27 49 49 H 1.08995 * 109.46929 * 299.99822 * 30 29 27 50 50 H 1.08996 * 109.46920 * 60.00348 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6087 1.9903 0.8379 5 6 1.6629 2.1355 -1.3265 6 6 2.9155 2.9960 -1.6398 7 6 4.0557 2.0876 -1.1160 8 7 3.5069 1.4543 0.0970 9 6 4.2303 0.9625 1.1222 10 8 3.6704 0.5437 2.1140 11 6 5.7221 0.9328 1.0376 12 8 6.2821 1.3520 0.0460 13 7 6.4456 0.4405 2.0627 14 6 7.9077 0.4058 1.9773 15 1 8.2851 1.2662 1.4248 16 6 8.3955 -0.9198 1.3414 17 7 9.7656 -1.1026 1.8551 18 6 10.7520 -1.8372 1.2528 19 1 10.5545 -2.3441 0.3198 20 6 12.0057 -1.9302 1.8414 21 7 12.2462 -1.3128 2.9786 22 14 13.3514 -2.9317 1.0195 23 1 12.8304 -3.5215 -0.2398 24 1 14.5065 -2.0505 0.7120 25 1 13.7873 -4.0187 1.9325 26 6 9.8974 -0.3659 3.1205 27 6 8.5455 0.3282 3.3895 28 1 7.9281 -0.2705 4.0592 29 8 8.7471 1.6372 3.9258 30 6 8.6707 1.6994 5.3515 31 1 -0.3634 0.6000 0.8343 32 1 -0.3633 0.4225 -0.9368 33 1 -0.3633 -1.0226 0.1024 34 1 1.8934 -0.5138 -0.8900 35 1 1.8934 -0.5138 0.8900 36 1 0.7836 2.7667 -1.1983 37 1 1.4954 1.3982 -2.1117 38 1 2.8869 3.9400 -1.0956 39 1 3.0136 3.1674 -2.7117 40 1 4.9332 2.6849 -0.8683 41 1 4.3104 1.3301 -1.8573 42 1 5.9979 0.1051 2.8551 43 1 7.7595 -1.7477 1.6552 44 1 8.4047 -0.8384 0.2545 45 1 13.1222 -1.3782 3.3901 46 1 10.6867 0.3808 3.0342 47 1 10.1262 -1.0584 3.9305 48 1 8.8341 2.7259 5.6797 49 1 7.6853 1.3666 5.6773 50 1 9.4342 1.0533 5.7847 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001082310188.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:32:22 Heat of formation + Delta-G solvation = -101.449897 kcal Electronic energy + Delta-G solvation = -30708.154223 eV Core-core repulsion = 26542.678334 eV Total energy + Delta-G solvation = -4165.475889 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.03527 -40.64542 -39.52455 -38.71428 -37.55793 -35.80744 -34.45588 -33.71046 -32.60731 -30.69032 -29.18971 -28.80129 -27.57492 -26.85351 -25.79208 -24.16966 -23.11094 -22.36482 -22.08153 -21.63062 -20.60517 -19.24047 -18.62165 -18.36721 -17.85777 -17.28827 -17.19291 -16.59633 -16.31222 -16.04500 -15.84563 -15.62963 -15.41188 -15.10029 -15.06158 -14.78195 -14.52122 -14.34969 -14.11347 -13.98151 -13.65696 -13.44187 -13.26754 -13.01741 -13.00880 -12.81918 -12.75691 -12.63190 -12.60101 -12.36250 -12.13584 -12.04268 -12.00150 -11.88598 -11.69948 -11.58433 -11.44757 -10.80293 -10.77213 -10.61068 -10.27246 -9.85757 -8.99758 -7.88766 -5.27298 0.26961 1.12012 1.46248 1.47530 1.58038 2.04937 2.31296 2.45877 2.71382 3.16602 3.31509 3.43617 3.59501 3.66829 3.77994 3.85665 3.86579 4.02433 4.16681 4.22340 4.29526 4.33397 4.37448 4.47643 4.55499 4.57484 4.61850 4.72721 4.77157 4.81344 4.84740 4.90714 4.92969 4.99328 5.10299 5.13054 5.15499 5.20651 5.24927 5.32333 5.35002 5.39360 5.44837 5.63642 5.95267 6.11196 6.17353 6.25614 6.59082 6.86129 7.02955 7.67255 8.29688 9.21157 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.015642 B = 0.002641 C = 0.002460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1789.633461 B =10598.812896 C =11378.692560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.134 4.134 3 C 0.128 3.872 4 H 0.077 0.923 5 C -0.117 4.117 6 C -0.127 4.127 7 C 0.092 3.908 8 N -0.586 5.586 9 C 0.524 3.476 10 O -0.540 6.540 11 C 0.507 3.493 12 O -0.533 6.533 13 N -0.675 5.675 14 C 0.149 3.851 15 H 0.090 0.910 16 C 0.132 3.868 17 N -0.620 5.620 18 C -0.246 4.246 19 H 0.085 0.915 20 C -0.062 4.062 21 N -0.949 5.949 22 Si 0.982 3.018 23 H -0.265 1.265 24 H -0.292 1.292 25 H -0.289 1.289 26 C 0.177 3.823 27 C 0.075 3.925 28 H 0.093 0.907 29 O -0.395 6.395 30 C 0.026 3.974 31 H 0.057 0.943 32 H 0.076 0.924 33 H 0.057 0.943 34 H 0.065 0.935 35 H 0.045 0.955 36 H 0.107 0.893 37 H 0.091 0.909 38 H 0.080 0.920 39 H 0.109 0.891 40 H 0.079 0.921 41 H 0.073 0.927 42 H 0.418 0.582 43 H 0.039 0.961 44 H 0.045 0.955 45 H 0.249 0.751 46 H 0.022 0.978 47 H 0.023 0.977 48 H 0.103 0.897 49 H 0.060 0.940 50 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.889 8.368 -5.182 26.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.173 4.173 3 C 0.026 3.974 4 H 0.095 0.905 5 C -0.155 4.155 6 C -0.165 4.165 7 C -0.030 4.030 8 N -0.319 5.319 9 C 0.306 3.694 10 O -0.419 6.419 11 C 0.288 3.712 12 O -0.410 6.410 13 N -0.328 5.328 14 C 0.043 3.957 15 H 0.108 0.892 16 C 0.005 3.995 17 N -0.348 5.348 18 C -0.374 4.374 19 H 0.103 0.897 20 C -0.256 4.256 21 N -0.598 5.598 22 Si 0.810 3.190 23 H -0.190 1.190 24 H -0.219 1.219 25 H -0.216 1.216 26 C 0.051 3.949 27 C 0.015 3.985 28 H 0.111 0.889 29 O -0.314 6.314 30 C -0.070 4.070 31 H 0.076 0.924 32 H 0.095 0.905 33 H 0.077 0.923 34 H 0.083 0.917 35 H 0.064 0.936 36 H 0.126 0.874 37 H 0.110 0.890 38 H 0.099 0.901 39 H 0.127 0.873 40 H 0.097 0.903 41 H 0.092 0.908 42 H 0.256 0.744 43 H 0.056 0.944 44 H 0.063 0.937 45 H 0.058 0.942 46 H 0.041 0.959 47 H 0.042 0.958 48 H 0.121 0.879 49 H 0.079 0.921 50 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -24.511 8.541 -5.384 26.509 hybrid contribution 1.277 -1.033 0.609 1.752 sum -23.233 7.508 -4.775 24.879 Atomic orbital electron populations 1.21672 0.92826 1.02385 1.02969 1.21863 0.98134 0.95493 1.01788 1.22060 0.77416 0.97394 1.00537 0.90450 1.22776 0.98922 0.99331 0.94437 1.22862 0.92610 0.97704 1.03288 1.22741 0.98301 0.96650 0.85306 1.48527 1.08358 1.56060 1.18920 1.19582 0.87202 0.79457 0.83123 1.90728 1.72443 1.47840 1.30844 1.20285 0.88493 0.78814 0.83591 1.90737 1.72822 1.46362 1.31045 1.45537 1.06163 1.61234 1.19865 1.22054 0.78103 0.99019 0.96504 0.89224 1.21914 0.86174 0.93995 0.97389 1.44524 1.08359 1.58349 1.23580 1.19490 0.90557 1.22957 1.04404 0.89705 1.25692 0.99855 1.01856 0.98158 1.70161 1.22078 1.47911 1.19622 0.84957 0.78625 0.77536 0.77865 1.18970 1.21878 1.21586 1.21279 0.92467 0.93317 0.87858 1.23512 0.96548 0.84789 0.93615 0.88939 1.87879 1.93097 1.27713 1.22701 1.23003 1.00890 1.03734 0.79391 0.92396 0.90528 0.92343 0.91663 0.93579 0.87416 0.89031 0.90110 0.87305 0.90289 0.90844 0.74421 0.94370 0.93695 0.94157 0.95930 0.95846 0.87882 0.92131 0.94336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.59 9.66 71.98 0.70 -0.89 16 2 C -0.13 -2.27 5.39 30.59 0.17 -2.10 16 3 C 0.13 2.10 2.88 45.34 0.13 2.24 16 4 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 5 C -0.12 -1.07 5.67 31.79 0.18 -0.89 16 6 C -0.13 -1.36 7.09 31.99 0.23 -1.13 16 7 C 0.09 1.76 5.88 86.85 0.51 2.27 16 8 N -0.59 -13.21 3.06 -789.59 -2.42 -15.63 16 9 C 0.52 14.88 7.64 87.27 0.67 15.55 16 10 O -0.54 -16.80 15.67 -3.25 -0.05 -16.85 16 11 C 0.51 16.11 7.85 87.27 0.69 16.79 16 12 O -0.53 -18.89 13.61 -3.25 -0.04 -18.93 16 13 N -0.68 -21.25 5.21 -437.31 -2.28 -23.53 16 14 C 0.15 5.66 3.09 46.38 0.14 5.81 16 15 H 0.09 3.82 7.64 -2.39 -0.02 3.80 16 16 C 0.13 5.69 6.93 86.84 0.60 6.29 16 17 N -0.62 -32.69 3.40 -691.88 -2.35 -35.04 16 18 C -0.25 -13.99 10.28 84.04 0.86 -13.13 16 19 H 0.09 4.63 7.83 -2.91 -0.02 4.61 16 20 C -0.06 -3.58 5.49 84.86 0.47 -3.11 16 21 N -0.95 -57.26 10.31 21.65 0.22 -57.04 16 22 Si 0.98 46.11 29.55 68.60 2.03 48.13 16 23 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 24 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 25 H -0.29 -13.42 7.11 99.48 0.71 -12.72 16 26 C 0.18 8.89 5.15 86.73 0.45 9.33 16 27 C 0.07 2.87 3.09 31.78 0.10 2.96 16 28 H 0.09 3.05 7.67 -2.39 -0.02 3.04 16 29 O -0.40 -14.58 10.43 -148.98 -1.55 -16.13 16 30 C 0.03 0.71 10.85 113.37 1.23 1.94 16 31 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.08 0.57 7.63 -2.39 -0.02 0.55 16 33 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 34 H 0.06 1.09 8.05 -2.39 -0.02 1.07 16 35 H 0.05 1.06 6.92 -2.39 -0.02 1.04 16 36 H 0.11 0.54 8.14 -2.39 -0.02 0.52 16 37 H 0.09 0.68 7.79 -2.39 -0.02 0.66 16 38 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 40 H 0.08 1.84 6.48 -2.39 -0.02 1.83 16 41 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 42 H 0.42 11.58 8.01 -92.71 -0.74 10.84 16 43 H 0.04 1.57 8.14 -2.38 -0.02 1.55 16 44 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16 45 H 0.25 14.53 8.31 -92.71 -0.77 13.76 16 46 H 0.02 1.30 7.30 -2.39 -0.02 1.29 16 47 H 0.02 1.28 7.50 -2.39 -0.02 1.26 16 48 H 0.10 2.35 8.14 -2.39 -0.02 2.33 16 49 H 0.06 1.37 8.11 -2.39 -0.02 1.35 16 50 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 Total: -1.00 -72.60 398.29 0.86 -71.74 By element: Atomic # 1 Polarization: 21.16 SS G_CDS: 0.19 Total: 21.35 kcal Atomic # 6 Polarization: 34.82 SS G_CDS: 7.11 Total: 41.93 kcal Atomic # 7 Polarization: -124.42 SS G_CDS: -6.82 Total: -131.24 kcal Atomic # 8 Polarization: -50.26 SS G_CDS: -1.65 Total: -51.91 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 2.03 Total: 48.13 kcal Total: -72.60 0.86 -71.74 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082310188.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.707 kcal (2) G-P(sol) polarization free energy of solvation -72.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds