Wall clock time and date at job start Tue Mar 31 2020 22:31:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52992 * 109.47368 * 2 1 4 4 C 1.53002 * 109.46944 * 120.00441 * 2 1 3 5 5 N 1.46501 * 109.47011 * 64.99649 * 4 2 1 6 6 C 1.46758 * 124.35093 * 90.00252 * 5 4 2 7 7 C 1.54476 * 105.47698 * 197.01189 * 6 5 4 8 8 H 1.09003 * 110.96898 * 92.70267 * 7 6 5 9 9 C 1.50698 * 110.97188 * 216.46262 * 7 6 5 10 10 O 1.21274 * 120.00167 * 0.02562 * 9 7 6 11 11 N 1.34778 * 119.99689 * 179.97438 * 9 7 6 12 12 C 1.46510 * 119.99746 * 180.02562 * 11 9 7 13 13 H 1.08997 * 110.88380 * 34.30210 * 12 11 9 14 14 C 1.54908 * 110.99959 * 270.42186 * 12 11 9 15 15 N 1.47472 * 104.80666 * 204.94813 * 14 12 11 16 16 C 1.36938 * 125.63183 * 204.04749 * 15 14 12 17 17 H 1.08007 * 119.99766 * 354.81330 * 16 15 14 18 18 C 1.38802 * 120.00319 * 174.80887 * 16 15 14 19 19 N 1.31625 * 120.00025 * 7.05387 * 18 16 15 20 20 Si 1.86805 * 120.00123 * 187.05526 * 18 16 15 21 21 H 1.48499 * 109.47247 * 94.99075 * 20 18 16 22 22 H 1.48504 * 109.47162 * 214.98829 * 20 18 16 23 23 H 1.48497 * 109.47129 * 334.98518 * 20 18 16 24 24 C 1.47022 * 108.72455 * 24.07311 * 15 14 12 25 25 C 1.54326 * 107.27023 * 358.97264 * 24 15 14 26 26 H 1.09001 * 110.72011 * 219.44347 * 25 24 15 27 27 O 1.42899 * 110.71801 * 96.17171 * 25 24 15 28 28 C 1.54630 * 101.76521 * 334.58650 * 7 6 5 29 29 C 1.34422 * 124.34969 * 269.69715 * 5 4 2 30 30 O 1.21278 * 124.94018 * 359.57614 * 29 5 4 31 31 H 1.08999 * 109.47400 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47097 * 300.00051 * 1 2 3 33 33 H 1.09006 * 109.46925 * 59.99864 * 1 2 3 34 34 H 1.09003 * 109.47097 * 239.99949 * 2 1 3 35 35 H 1.09004 * 109.46801 * 179.97438 * 3 2 1 36 36 H 1.08996 * 109.47676 * 299.99718 * 3 2 1 37 37 H 1.09007 * 109.47259 * 60.00646 * 3 2 1 38 38 H 1.08999 * 109.46892 * 184.99696 * 4 2 1 39 39 H 1.09001 * 109.46922 * 304.99978 * 4 2 1 40 40 H 1.08996 * 110.24540 * 316.01449 * 6 5 4 41 41 H 1.09008 * 110.24551 * 77.92288 * 6 5 4 42 42 H 0.97002 * 120.00494 * 0.02562 * 11 9 7 43 43 H 1.08995 * 110.37067 * 323.75093 * 14 12 11 44 44 H 1.09000 * 110.36725 * 86.08352 * 14 12 11 45 45 H 0.97005 * 119.99865 * 179.97438 * 19 18 16 46 46 H 1.08998 * 109.88077 * 239.55875 * 24 15 14 47 47 H 1.08995 * 109.88427 * 118.39086 * 24 15 14 48 48 H 0.96698 * 114.00549 * 66.48133 * 27 25 24 49 49 H 1.08996 * 110.49092 * 143.47103 * 28 7 6 50 50 H 1.09001 * 110.48375 * 266.12001 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 7 1.6523 -2.1329 1.1904 6 6 2.4685 -3.1913 0.5842 7 6 1.5056 -4.3789 0.3633 8 1 1.0723 -4.3489 -0.6364 9 6 2.2039 -5.6919 0.6070 10 8 3.3723 -5.7063 0.9314 11 7 1.5295 -6.8502 0.4653 12 6 2.2082 -8.1267 0.7027 13 1 2.9462 -8.0321 1.4992 14 6 2.8598 -8.6593 -0.5978 15 7 2.9440 -10.1192 -0.4067 16 6 3.8272 -10.9563 -1.0346 17 1 4.4853 -10.5715 -1.7997 18 6 3.8768 -12.2994 -0.6878 19 7 2.9847 -12.7984 0.1415 20 14 5.2097 -13.3988 -1.3980 21 1 6.3470 -13.4759 -0.4463 22 1 4.6603 -14.7599 -1.6240 23 1 5.6812 -12.8349 -2.6883 24 6 1.9225 -10.5271 0.5688 25 6 1.1857 -9.2491 1.0223 26 1 0.9736 -9.2849 2.0909 27 8 -0.0169 -9.0660 0.2726 28 6 0.4286 -4.1163 1.4413 29 6 0.5060 -2.6261 1.6900 30 8 -0.3438 -1.9711 2.2555 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 1.8934 -0.5139 -0.8900 35 1 3.1301 1.4423 0.0005 36 1 1.6769 1.9563 -0.8899 37 1 1.6768 1.9563 0.8901 38 1 3.1263 -0.6445 1.2951 39 1 1.6053 -0.2619 2.1370 40 1 2.8763 -2.8540 -0.3687 41 1 3.2753 -3.4785 1.2587 42 1 0.5948 -6.8387 0.2061 43 1 2.2342 -8.4252 -1.4591 44 1 3.8557 -8.2347 -0.7246 45 1 3.0192 -13.7371 0.3835 46 1 2.3979 -11.0046 1.4256 47 1 1.2179 -11.2153 0.1020 48 1 -0.6891 -9.7416 0.4360 49 1 -0.5581 -4.3933 1.0703 50 1 0.6615 -4.6641 2.3545 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083504062.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:28 Heat of formation + Delta-G solvation = -96.046756 kcal Electronic energy + Delta-G solvation = -30291.644083 eV Core-core repulsion = 26126.402492 eV Total energy + Delta-G solvation = -4165.241591 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.09472 -39.55415 -38.01594 -36.81946 -35.87460 -34.89006 -34.09146 -32.33594 -31.52159 -28.62245 -27.98247 -27.44551 -27.28275 -26.44384 -24.62029 -23.21946 -20.85027 -20.67495 -20.33321 -19.92705 -19.56704 -17.79680 -17.27266 -17.12795 -16.81817 -15.96251 -15.72850 -15.35841 -15.11169 -14.83493 -14.73008 -14.22650 -14.15267 -14.01474 -13.91108 -13.37465 -13.20207 -13.15258 -12.91624 -12.69294 -12.65664 -12.52558 -12.29773 -12.23655 -11.80697 -11.75703 -11.37491 -11.35200 -11.25653 -11.04123 -10.99299 -10.89346 -10.57200 -10.52423 -10.21759 -10.11640 -9.87540 -9.71881 -9.36400 -8.94080 -8.78923 -8.66909 -6.91668 -5.80071 -3.12029 2.33974 2.57663 2.68393 3.18843 3.37799 3.43441 3.44863 3.99053 4.09199 4.41966 4.46689 4.49161 4.53368 4.61184 4.62596 4.74111 5.00243 5.06747 5.16815 5.22893 5.23206 5.28352 5.32484 5.35218 5.44602 5.45906 5.48370 5.55599 5.59144 5.66054 5.67161 5.75579 5.82352 5.91162 6.00763 6.05899 6.15737 6.26320 6.50886 6.60242 6.83814 6.85612 7.28106 7.39799 7.64753 7.71479 7.92581 8.00857 8.15559 8.30147 9.13532 9.73923 10.38299 11.32538 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.024776 B = 0.002173 C = 0.002059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.874832 B =12883.897530 C =13593.459589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.114 4.114 3 C -0.145 4.145 4 C 0.130 3.870 5 N -0.617 5.617 6 C 0.116 3.884 7 C -0.123 4.123 8 H 0.117 0.883 9 C 0.521 3.479 10 O -0.537 6.537 11 N -0.702 5.702 12 C 0.138 3.862 13 H 0.104 0.896 14 C 0.132 3.868 15 N -0.601 5.601 16 C -0.226 4.226 17 H 0.080 0.920 18 C -0.008 4.008 19 N -0.924 5.924 20 Si 0.913 3.087 21 H -0.288 1.288 22 H -0.291 1.291 23 H -0.280 1.280 24 C 0.153 3.847 25 C 0.068 3.932 26 H 0.061 0.939 27 O -0.568 6.568 28 C -0.145 4.145 29 C 0.521 3.479 30 O -0.529 6.529 31 H 0.053 0.947 32 H 0.057 0.943 33 H 0.050 0.950 34 H 0.072 0.928 35 H 0.056 0.944 36 H 0.058 0.942 37 H 0.056 0.944 38 H 0.080 0.920 39 H 0.083 0.917 40 H 0.084 0.916 41 H 0.094 0.906 42 H 0.408 0.592 43 H 0.025 0.975 44 H 0.045 0.955 45 H 0.253 0.747 46 H 0.057 0.943 47 H 0.051 0.949 48 H 0.380 0.620 49 H 0.111 0.889 50 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.297 22.409 1.493 23.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.134 4.134 3 C -0.203 4.203 4 C 0.008 3.992 5 N -0.351 5.351 6 C -0.007 4.007 7 C -0.145 4.145 8 H 0.135 0.865 9 C 0.306 3.694 10 O -0.414 6.414 11 N -0.353 5.353 12 C 0.033 3.967 13 H 0.122 0.878 14 C 0.004 3.996 15 N -0.328 5.328 16 C -0.354 4.354 17 H 0.098 0.902 18 C -0.204 4.204 19 N -0.572 5.572 20 Si 0.744 3.256 21 H -0.215 1.215 22 H -0.218 1.218 23 H -0.206 1.206 24 C 0.028 3.972 25 C 0.008 3.992 26 H 0.079 0.921 27 O -0.374 6.374 28 C -0.185 4.185 29 C 0.309 3.691 30 O -0.405 6.405 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.069 0.931 34 H 0.091 0.909 35 H 0.075 0.925 36 H 0.077 0.923 37 H 0.075 0.925 38 H 0.098 0.902 39 H 0.101 0.899 40 H 0.102 0.898 41 H 0.112 0.888 42 H 0.244 0.756 43 H 0.043 0.957 44 H 0.063 0.937 45 H 0.063 0.937 46 H 0.075 0.925 47 H 0.069 0.931 48 H 0.228 0.772 49 H 0.129 0.871 50 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -5.492 23.089 1.813 23.803 hybrid contribution -0.016 -1.324 -0.396 1.382 sum -5.508 21.765 1.417 22.496 Atomic orbital electron populations 1.21795 0.94443 1.02079 1.01525 1.21544 0.96946 0.96383 0.98527 1.21774 1.00954 0.95376 1.02187 1.21507 1.00126 0.78920 0.98658 1.48303 1.20410 1.07964 1.58422 1.21999 0.93546 0.85110 1.00017 1.22221 0.96949 0.93559 1.01738 0.86494 1.20006 0.86980 0.84991 0.77442 1.90729 1.16115 1.87273 1.47284 1.45748 1.15290 1.05084 1.69158 1.22389 0.93922 0.80325 1.00103 0.87769 1.21839 0.97914 0.85981 0.93825 1.44294 1.38549 1.00488 1.49434 1.19083 1.11674 0.89485 1.15137 0.90246 1.24817 0.99047 0.96901 0.99659 1.69927 1.35394 1.13184 1.38688 0.86073 0.81297 0.79912 0.78353 1.21530 1.21771 1.20581 1.21878 0.91070 0.90489 0.93802 1.23503 0.84908 0.97063 0.93731 0.92070 1.86233 1.26903 1.54650 1.69634 1.22345 1.00829 0.94784 1.00577 1.20726 0.81117 0.89751 0.77527 1.90730 1.41707 1.65377 1.42695 0.92743 0.92398 0.93096 0.90914 0.92490 0.92311 0.92455 0.90171 0.89896 0.89767 0.88773 0.75606 0.95687 0.93667 0.93687 0.92489 0.93057 0.77176 0.87063 0.87289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.21 8.36 37.16 0.31 -0.90 16 2 C -0.11 -0.82 3.13 -90.62 -0.28 -1.10 16 3 C -0.15 -0.83 9.19 37.15 0.34 -0.49 16 4 C 0.13 1.02 5.39 -4.04 -0.02 1.00 16 5 N -0.62 -5.71 2.78 -172.41 -0.48 -6.19 16 6 C 0.12 1.03 6.71 -3.13 -0.02 1.01 16 7 C -0.12 -1.10 3.55 -90.14 -0.32 -1.42 16 8 H 0.12 0.83 8.14 -51.93 -0.42 0.41 16 9 C 0.52 6.71 7.06 -10.99 -0.08 6.63 16 10 O -0.54 -8.92 15.20 5.56 0.08 -8.83 16 11 N -0.70 -9.36 5.18 -51.73 -0.27 -9.63 16 12 C 0.14 2.38 3.25 -65.78 -0.21 2.16 16 13 H 0.10 1.92 7.63 -51.93 -0.40 1.53 16 14 C 0.13 2.75 6.92 -2.50 -0.02 2.74 16 15 N -0.60 -15.02 3.40 -170.04 -0.58 -15.60 16 16 C -0.23 -6.23 10.26 -15.06 -0.15 -6.38 16 17 H 0.08 2.14 7.84 -52.48 -0.41 1.73 16 18 C -0.01 -0.23 5.48 -17.43 -0.10 -0.32 16 19 N -0.92 -26.32 10.36 55.49 0.57 -25.75 16 20 Si 0.91 21.87 29.56 -169.99 -5.02 16.84 16 21 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 22 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 23 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 24 C 0.15 3.46 5.15 -3.06 -0.02 3.45 16 25 C 0.07 1.14 4.20 -24.90 -0.10 1.04 16 26 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 27 O -0.57 -8.35 12.13 -35.23 -0.43 -8.77 16 28 C -0.14 -1.28 6.41 -26.74 -0.17 -1.45 16 29 C 0.52 5.73 6.60 -10.86 -0.07 5.66 16 30 O -0.53 -7.50 16.50 5.56 0.09 -7.41 16 31 H 0.05 0.55 6.16 -51.93 -0.32 0.23 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 34 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 36 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 37 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 38 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.08 0.73 7.92 -51.93 -0.41 0.32 16 40 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 41 H 0.09 0.98 6.97 -51.92 -0.36 0.62 16 42 H 0.41 4.73 7.57 -40.82 -0.31 4.42 16 43 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 45 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 46 H 0.06 1.43 7.30 -51.93 -0.38 1.05 16 47 H 0.05 1.27 7.54 -51.93 -0.39 0.88 16 48 H 0.38 4.31 9.12 45.56 0.42 4.72 16 49 H 0.11 0.81 8.14 -51.93 -0.42 0.39 16 50 H 0.11 1.00 7.89 -51.93 -0.41 0.59 16 LS Contribution 398.16 15.07 6.00 6.00 Total: -1.00 -33.61 398.16 -8.55 -42.15 By element: Atomic # 1 Polarization: 13.17 SS G_CDS: -7.61 Total: 5.56 kcal Atomic # 6 Polarization: 12.54 SS G_CDS: -0.92 Total: 11.62 kcal Atomic # 7 Polarization: -56.42 SS G_CDS: -0.75 Total: -57.17 kcal Atomic # 8 Polarization: -24.76 SS G_CDS: -0.25 Total: -25.01 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -33.61 -8.55 -42.15 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083504062.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.893 kcal (2) G-P(sol) polarization free energy of solvation -33.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds