Wall clock time and date at job start Tue Mar 31 2020 22:31:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52992 * 109.47368 * 2 1 4 4 C 1.53002 * 109.46944 * 120.00441 * 2 1 3 5 5 N 1.46501 * 109.47011 * 64.99649 * 4 2 1 6 6 C 1.46758 * 124.35093 * 90.00252 * 5 4 2 7 7 C 1.54476 * 105.47698 * 197.01189 * 6 5 4 8 8 H 1.09003 * 110.96898 * 92.70267 * 7 6 5 9 9 C 1.50698 * 110.97188 * 216.46262 * 7 6 5 10 10 O 1.21274 * 120.00167 * 0.02562 * 9 7 6 11 11 N 1.34778 * 119.99689 * 179.97438 * 9 7 6 12 12 C 1.46510 * 119.99746 * 180.02562 * 11 9 7 13 13 H 1.08997 * 110.88380 * 34.30210 * 12 11 9 14 14 C 1.54908 * 110.99959 * 270.42186 * 12 11 9 15 15 N 1.47472 * 104.80666 * 204.94813 * 14 12 11 16 16 C 1.36938 * 125.63183 * 204.04749 * 15 14 12 17 17 H 1.08007 * 119.99766 * 354.81330 * 16 15 14 18 18 C 1.38802 * 120.00319 * 174.80887 * 16 15 14 19 19 N 1.31625 * 120.00025 * 7.05387 * 18 16 15 20 20 Si 1.86805 * 120.00123 * 187.05526 * 18 16 15 21 21 H 1.48499 * 109.47247 * 94.99075 * 20 18 16 22 22 H 1.48504 * 109.47162 * 214.98829 * 20 18 16 23 23 H 1.48497 * 109.47129 * 334.98518 * 20 18 16 24 24 C 1.47022 * 108.72455 * 24.07311 * 15 14 12 25 25 C 1.54326 * 107.27023 * 358.97264 * 24 15 14 26 26 H 1.09001 * 110.72011 * 219.44347 * 25 24 15 27 27 O 1.42899 * 110.71801 * 96.17171 * 25 24 15 28 28 C 1.54630 * 101.76521 * 334.58650 * 7 6 5 29 29 C 1.34422 * 124.34969 * 269.69715 * 5 4 2 30 30 O 1.21278 * 124.94018 * 359.57614 * 29 5 4 31 31 H 1.08999 * 109.47400 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47097 * 300.00051 * 1 2 3 33 33 H 1.09006 * 109.46925 * 59.99864 * 1 2 3 34 34 H 1.09003 * 109.47097 * 239.99949 * 2 1 3 35 35 H 1.09004 * 109.46801 * 179.97438 * 3 2 1 36 36 H 1.08996 * 109.47676 * 299.99718 * 3 2 1 37 37 H 1.09007 * 109.47259 * 60.00646 * 3 2 1 38 38 H 1.08999 * 109.46892 * 184.99696 * 4 2 1 39 39 H 1.09001 * 109.46922 * 304.99978 * 4 2 1 40 40 H 1.08996 * 110.24540 * 316.01449 * 6 5 4 41 41 H 1.09008 * 110.24551 * 77.92288 * 6 5 4 42 42 H 0.97002 * 120.00494 * 0.02562 * 11 9 7 43 43 H 1.08995 * 110.37067 * 323.75093 * 14 12 11 44 44 H 1.09000 * 110.36725 * 86.08352 * 14 12 11 45 45 H 0.97005 * 119.99865 * 179.97438 * 19 18 16 46 46 H 1.08998 * 109.88077 * 239.55875 * 24 15 14 47 47 H 1.08995 * 109.88427 * 118.39086 * 24 15 14 48 48 H 0.96698 * 114.00549 * 66.48133 * 27 25 24 49 49 H 1.08996 * 110.49092 * 143.47103 * 28 7 6 50 50 H 1.09001 * 110.48375 * 266.12001 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 7 1.6523 -2.1329 1.1904 6 6 2.4685 -3.1913 0.5842 7 6 1.5056 -4.3789 0.3633 8 1 1.0723 -4.3489 -0.6364 9 6 2.2039 -5.6919 0.6070 10 8 3.3723 -5.7063 0.9314 11 7 1.5295 -6.8502 0.4653 12 6 2.2082 -8.1267 0.7027 13 1 2.9462 -8.0321 1.4992 14 6 2.8598 -8.6593 -0.5978 15 7 2.9440 -10.1192 -0.4067 16 6 3.8272 -10.9563 -1.0346 17 1 4.4853 -10.5715 -1.7997 18 6 3.8768 -12.2994 -0.6878 19 7 2.9847 -12.7984 0.1415 20 14 5.2097 -13.3988 -1.3980 21 1 6.3470 -13.4759 -0.4463 22 1 4.6603 -14.7599 -1.6240 23 1 5.6812 -12.8349 -2.6883 24 6 1.9225 -10.5271 0.5688 25 6 1.1857 -9.2491 1.0223 26 1 0.9736 -9.2849 2.0909 27 8 -0.0169 -9.0660 0.2726 28 6 0.4286 -4.1163 1.4413 29 6 0.5060 -2.6261 1.6900 30 8 -0.3438 -1.9711 2.2555 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 1.8934 -0.5139 -0.8900 35 1 3.1301 1.4423 0.0005 36 1 1.6769 1.9563 -0.8899 37 1 1.6768 1.9563 0.8901 38 1 3.1263 -0.6445 1.2951 39 1 1.6053 -0.2619 2.1370 40 1 2.8763 -2.8540 -0.3687 41 1 3.2753 -3.4785 1.2587 42 1 0.5948 -6.8387 0.2061 43 1 2.2342 -8.4252 -1.4591 44 1 3.8557 -8.2347 -0.7246 45 1 3.0192 -13.7371 0.3835 46 1 2.3979 -11.0046 1.4256 47 1 1.2179 -11.2153 0.1020 48 1 -0.6891 -9.7416 0.4360 49 1 -0.5581 -4.3933 1.0703 50 1 0.6615 -4.6641 2.3545 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083504062.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:27 Heat of formation + Delta-G solvation = -121.330931 kcal Electronic energy + Delta-G solvation = -30292.740487 eV Core-core repulsion = 26126.402492 eV Total energy + Delta-G solvation = -4166.337995 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.95556 -40.70869 -39.39695 -37.60434 -36.62857 -36.42347 -35.43452 -33.69104 -32.79113 -30.27434 -28.97658 -28.60816 -28.03142 -27.30159 -26.35087 -24.22720 -22.32338 -21.70415 -21.45977 -21.13696 -20.32596 -19.23693 -18.43978 -18.25551 -17.99603 -16.91646 -16.82809 -16.69089 -16.38823 -16.01059 -15.73514 -15.49677 -15.25169 -14.93475 -14.76091 -14.67603 -14.55251 -14.28756 -14.24477 -13.87421 -13.78042 -13.46159 -13.17564 -13.07509 -12.89956 -12.81887 -12.76520 -12.55340 -12.44065 -12.24772 -12.08614 -12.02688 -11.89342 -11.87663 -11.85117 -11.61806 -11.14249 -10.85312 -10.74193 -10.71657 -10.06240 -9.68715 -8.93037 -7.89375 -5.23453 1.45638 1.47790 1.50061 1.56057 1.57655 1.86561 2.17415 2.49279 3.14801 3.22989 3.30887 3.37255 3.61450 3.78944 3.84854 3.89522 3.90465 3.98207 3.98875 4.14769 4.20873 4.30817 4.48377 4.53291 4.55655 4.59250 4.67337 4.69280 4.78210 4.81084 4.83608 4.87495 4.94769 4.98838 5.04719 5.08517 5.21371 5.36306 5.38850 5.41015 5.45774 5.52379 5.58113 5.66655 6.07965 6.15795 6.60121 6.89359 7.07447 7.11743 7.26003 7.72436 8.35772 9.20923 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.024776 B = 0.002173 C = 0.002059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.874832 B =12883.897530 C =13593.459589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.109 4.109 3 C -0.142 4.142 4 C 0.124 3.876 5 N -0.612 5.612 6 C 0.118 3.882 7 C -0.108 4.108 8 H 0.147 0.853 9 C 0.525 3.475 10 O -0.574 6.574 11 N -0.691 5.691 12 C 0.153 3.847 13 H 0.092 0.908 14 C 0.132 3.868 15 N -0.623 5.623 16 C -0.244 4.244 17 H 0.077 0.923 18 C -0.061 4.061 19 N -0.947 5.947 20 Si 0.977 3.023 21 H -0.287 1.287 22 H -0.292 1.292 23 H -0.270 1.270 24 C 0.158 3.842 25 C 0.092 3.908 26 H 0.091 0.909 27 O -0.563 6.563 28 C -0.138 4.138 29 C 0.515 3.485 30 O -0.567 6.567 31 H 0.038 0.962 32 H 0.042 0.958 33 H 0.059 0.941 34 H 0.080 0.920 35 H 0.067 0.933 36 H 0.063 0.937 37 H 0.054 0.946 38 H 0.098 0.902 39 H 0.069 0.931 40 H 0.105 0.895 41 H 0.079 0.921 42 H 0.421 0.579 43 H 0.027 0.973 44 H 0.031 0.969 45 H 0.249 0.751 46 H 0.024 0.976 47 H 0.023 0.977 48 H 0.398 0.602 49 H 0.132 0.868 50 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.651 23.778 0.641 24.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.128 4.128 3 C -0.200 4.200 4 C 0.003 3.997 5 N -0.345 5.345 6 C -0.005 4.005 7 C -0.129 4.129 8 H 0.165 0.835 9 C 0.311 3.689 10 O -0.454 6.454 11 N -0.343 5.343 12 C 0.046 3.954 13 H 0.110 0.890 14 C 0.005 3.995 15 N -0.350 5.350 16 C -0.373 4.373 17 H 0.095 0.905 18 C -0.254 4.254 19 N -0.595 5.595 20 Si 0.805 3.195 21 H -0.214 1.214 22 H -0.219 1.219 23 H -0.195 1.195 24 C 0.032 3.968 25 C 0.032 3.968 26 H 0.108 0.892 27 O -0.371 6.371 28 C -0.178 4.178 29 C 0.303 3.697 30 O -0.446 6.446 31 H 0.057 0.943 32 H 0.061 0.939 33 H 0.078 0.922 34 H 0.098 0.902 35 H 0.086 0.914 36 H 0.082 0.918 37 H 0.073 0.927 38 H 0.116 0.884 39 H 0.088 0.912 40 H 0.123 0.877 41 H 0.097 0.903 42 H 0.259 0.741 43 H 0.045 0.955 44 H 0.049 0.951 45 H 0.058 0.942 46 H 0.042 0.958 47 H 0.041 0.959 48 H 0.249 0.751 49 H 0.150 0.850 50 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -5.869 24.493 0.939 25.203 hybrid contribution 0.103 -1.711 -0.154 1.721 sum -5.766 22.782 0.785 23.513 Atomic orbital electron populations 1.21754 0.95621 1.00893 1.01233 1.21504 0.95792 0.97302 0.98217 1.21750 1.01624 0.94280 1.02320 1.21652 1.01177 0.78235 0.98619 1.48395 1.19847 1.08595 1.57634 1.22015 0.92983 0.84970 1.00562 1.22164 0.96561 0.90914 1.03293 0.83537 1.20595 0.86481 0.85816 0.75982 1.90728 1.18053 1.87842 1.48742 1.45575 1.15682 1.03845 1.69200 1.21920 0.93828 0.82202 0.97464 0.88986 1.21911 0.97614 0.84076 0.95903 1.44584 1.38750 1.02120 1.49516 1.19398 1.12208 0.90311 1.15393 0.90466 1.25610 1.01095 0.98220 1.00521 1.70122 1.36597 1.13051 1.39752 0.85087 0.78592 0.77839 0.77984 1.21430 1.21862 1.19493 1.21734 0.90227 0.92949 0.91879 1.23114 0.85006 0.93517 0.95174 0.89165 1.86195 1.26284 1.55214 1.69443 1.22347 1.01839 0.93166 1.00495 1.21071 0.81034 0.90524 0.77043 1.90712 1.43072 1.66339 1.44499 0.94329 0.93869 0.92164 0.90210 0.91391 0.91820 0.92720 0.88353 0.91215 0.87699 0.90291 0.74096 0.95511 0.95066 0.94176 0.95762 0.95872 0.75091 0.84951 0.87483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.22 8.36 71.98 0.60 -1.62 16 2 C -0.11 -1.35 3.13 -10.79 -0.03 -1.39 16 3 C -0.14 -1.34 9.19 71.98 0.66 -0.68 16 4 C 0.12 1.78 5.39 86.38 0.47 2.25 16 5 N -0.61 -10.30 2.78 -817.99 -2.27 -12.57 16 6 C 0.12 1.81 6.71 86.83 0.58 2.39 16 7 C -0.11 -1.61 3.55 -10.48 -0.04 -1.65 16 8 H 0.15 1.44 8.14 -2.39 -0.02 1.42 16 9 C 0.52 12.37 7.06 87.66 0.62 12.99 16 10 O -0.57 -18.46 15.20 -3.01 -0.05 -18.50 16 11 N -0.69 -16.77 5.18 -435.96 -2.26 -19.03 16 12 C 0.15 5.07 3.25 46.38 0.15 5.22 16 13 H 0.09 3.34 7.63 -2.39 -0.02 3.33 16 14 C 0.13 5.48 6.92 86.85 0.60 6.08 16 15 N -0.62 -31.64 3.40 -691.88 -2.35 -33.99 16 16 C -0.24 -13.71 10.26 84.03 0.86 -12.85 16 17 H 0.08 4.23 7.84 -2.91 -0.02 4.21 16 18 C -0.06 -3.44 5.48 84.86 0.46 -2.97 16 19 N -0.95 -55.16 10.36 21.65 0.22 -54.94 16 20 Si 0.98 45.41 29.56 68.60 2.03 47.44 16 21 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 22 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 23 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 24 C 0.16 7.23 5.15 86.73 0.45 7.68 16 25 C 0.09 2.96 4.20 31.78 0.13 3.10 16 26 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 27 O -0.56 -15.03 12.13 -148.98 -1.81 -16.84 16 28 C -0.14 -2.10 6.41 30.59 0.20 -1.90 16 29 C 0.51 10.63 6.60 87.90 0.58 11.21 16 30 O -0.57 -15.86 16.50 -3.02 -0.05 -15.91 16 31 H 0.04 0.74 6.16 -2.39 -0.01 0.73 16 32 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.06 0.83 8.14 -2.38 -0.02 0.81 16 34 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 36 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 37 H 0.05 0.55 8.14 -2.38 -0.02 0.53 16 38 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 39 H 0.07 1.20 7.92 -2.39 -0.02 1.18 16 40 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 41 H 0.08 1.52 6.97 -2.38 -0.02 1.51 16 42 H 0.42 8.28 7.57 -92.71 -0.70 7.58 16 43 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 44 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 45 H 0.25 14.09 8.31 -92.70 -0.77 13.32 16 46 H 0.02 1.26 7.30 -2.39 -0.02 1.24 16 47 H 0.02 1.18 7.54 -2.39 -0.02 1.16 16 48 H 0.40 7.92 9.12 -74.06 -0.68 7.24 16 49 H 0.13 1.48 8.14 -2.39 -0.02 1.46 16 50 H 0.11 1.73 7.89 -2.39 -0.02 1.71 16 Total: -1.00 -75.22 398.16 -0.66 -75.88 By element: Atomic # 1 Polarization: 21.03 SS G_CDS: -0.43 Total: 20.60 kcal Atomic # 6 Polarization: 21.55 SS G_CDS: 6.29 Total: 27.85 kcal Atomic # 7 Polarization: -113.87 SS G_CDS: -6.65 Total: -120.52 kcal Atomic # 8 Polarization: -49.34 SS G_CDS: -1.90 Total: -51.25 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 2.03 Total: 47.44 kcal Total: -75.22 -0.66 -75.88 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083504062.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.455 kcal (2) G-P(sol) polarization free energy of solvation -75.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds