Wall clock time and date at job start Tue Mar 31 2020 22:31:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47799 * 2 1 4 4 C 1.53008 * 109.46958 * 239.99742 * 2 1 3 5 5 N 1.46510 * 109.47115 * 120.00237 * 2 1 3 6 6 C 1.46761 * 124.35154 * 179.97438 * 5 2 1 7 7 C 1.54478 * 105.47271 * 197.03619 * 6 5 2 8 8 H 1.08999 * 111.00117 * 92.72135 * 7 6 5 9 9 C 1.50705 * 110.96741 * 216.46377 * 7 6 5 10 10 O 1.21278 * 120.00083 * 353.83835 * 9 7 6 11 11 N 1.34773 * 119.99617 * 173.83261 * 9 7 6 12 12 C 1.46500 * 119.99777 * 180.02562 * 11 9 7 13 13 H 1.09007 * 110.88901 * 31.12011 * 12 11 9 14 14 C 1.55126 * 111.19578 * 267.18762 * 12 11 9 15 15 N 1.47423 * 104.72149 * 279.19279 * 14 12 11 16 16 C 1.36945 * 125.64719 * 155.81534 * 15 14 12 17 17 H 1.07997 * 119.99756 * 359.71441 * 16 15 14 18 18 C 1.38805 * 119.99878 * 179.71346 * 16 15 14 19 19 N 1.31624 * 120.00257 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99929 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.47187 * 179.97438 * 20 18 16 22 22 H 1.48494 * 109.47141 * 300.00154 * 20 18 16 23 23 H 1.48498 * 109.47018 * 60.00200 * 20 18 16 24 24 C 1.47022 * 108.70390 * 335.54841 * 15 14 12 25 25 C 1.54325 * 107.26948 * 1.29074 * 24 15 14 26 26 H 1.08999 * 110.71672 * 263.64788 * 25 24 15 27 27 O 1.42898 * 110.71865 * 140.55456 * 25 24 15 28 28 C 1.54625 * 101.76399 * 334.58310 * 7 6 5 29 29 C 1.34420 * 124.34540 * 0.02562 * 5 2 1 30 30 O 1.21281 * 124.94398 * 359.60458 * 29 5 2 31 31 H 1.09004 * 109.46751 * 300.00105 * 1 2 3 32 32 H 1.08997 * 109.46925 * 59.99708 * 1 2 3 33 33 H 1.08995 * 109.47499 * 180.02562 * 1 2 3 34 34 H 1.08996 * 109.47280 * 180.02562 * 3 2 1 35 35 H 1.09004 * 109.46782 * 300.00289 * 3 2 1 36 36 H 1.09001 * 109.46924 * 59.99583 * 3 2 1 37 37 H 1.08995 * 109.46958 * 300.00260 * 4 2 1 38 38 H 1.08997 * 109.46854 * 60.00506 * 4 2 1 39 39 H 1.09003 * 109.46953 * 180.02562 * 4 2 1 40 40 H 1.08997 * 110.24441 * 78.03221 * 6 5 2 41 41 H 1.09005 * 110.24263 * 316.03925 * 6 5 2 42 42 H 0.97002 * 120.00626 * 0.02562 * 11 9 7 43 43 H 1.09000 * 110.50043 * 160.34527 * 14 12 11 44 44 H 1.09005 * 110.33957 * 37.95423 * 14 12 11 45 45 H 0.97001 * 119.99885 * 179.97438 * 19 18 16 46 46 H 1.09002 * 109.88182 * 120.70703 * 24 15 14 47 47 H 1.09000 * 109.88325 * 241.71847 * 24 15 14 48 48 H 0.96708 * 113.99834 * 61.45524 * 27 25 24 49 49 H 1.09003 * 110.48095 * 143.47586 * 28 7 6 50 50 H 1.08997 * 110.48661 * 266.11847 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0402 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 7 2.0183 -0.6907 1.1962 6 6 3.4367 -0.8796 1.5223 7 6 3.4693 -1.9980 2.5874 8 1 3.6018 -2.9755 2.1236 9 6 4.5464 -1.7386 3.6090 10 8 5.3158 -0.8135 3.4575 11 7 4.6545 -2.5347 4.6912 12 6 5.7012 -2.2822 5.6846 13 1 5.9302 -1.2182 5.7460 14 6 6.9781 -3.1072 5.3760 15 7 6.6920 -4.4528 5.9059 16 6 7.2772 -5.6173 5.4853 17 1 8.0145 -5.5968 4.6965 18 6 6.9226 -6.8238 6.0729 19 7 6.0236 -6.8488 7.0339 20 14 7.7203 -8.4124 5.4986 21 1 7.1740 -9.5511 6.2797 22 1 7.4327 -8.6175 4.0563 23 1 9.1888 -8.3312 5.7039 24 6 5.6792 -4.3367 6.9653 25 6 5.2977 -2.8452 7.0730 26 1 5.8627 -2.3592 7.8683 27 8 3.8931 -2.6970 7.2899 28 6 2.0642 -1.8716 3.2204 29 6 1.2248 -1.2336 2.1355 30 8 0.0123 -1.2150 2.1160 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 -0.3634 -1.0276 0.0005 34 1 3.1301 1.4424 -0.0005 35 1 1.6768 1.9563 -0.8900 36 1 1.6768 1.9563 0.8900 37 1 1.6766 -1.7489 -1.2492 38 1 1.6767 -0.2075 -2.1392 39 1 3.1300 -0.7217 -1.2491 40 1 3.8561 0.0407 1.9287 41 1 3.9900 -1.1874 0.6350 42 1 4.0393 -3.2748 4.8123 43 1 7.8424 -2.6762 5.8813 44 1 7.1497 -3.1517 4.3004 45 1 5.7756 -7.6920 7.4442 46 1 4.8003 -4.9262 6.7040 47 1 6.0913 -4.6856 7.9121 48 1 3.5768 -3.1017 8.1093 49 1 1.6716 -2.8555 3.4771 50 1 2.0992 -1.2318 4.1021 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083504981.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:30 Heat of formation + Delta-G solvation = -109.971379 kcal Electronic energy + Delta-G solvation = -31112.110429 eV Core-core repulsion = 26946.265021 eV Total energy + Delta-G solvation = -4165.845408 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.09648 -40.80538 -39.33014 -37.78162 -36.60639 -36.51132 -35.25394 -33.53020 -31.66215 -30.09971 -28.96954 -28.77314 -28.23293 -28.04525 -26.36613 -24.53342 -22.48086 -22.22630 -21.59742 -21.05280 -19.68082 -19.05199 -18.47452 -18.05830 -17.55347 -17.29746 -16.90749 -16.52687 -16.31383 -15.87114 -15.67559 -15.40844 -15.06902 -14.88515 -14.74750 -14.65961 -14.45652 -14.25867 -13.99805 -13.90498 -13.66133 -13.23547 -13.09325 -13.08263 -13.04463 -12.97851 -12.71361 -12.63601 -12.52632 -12.46102 -12.39881 -12.05283 -12.03780 -11.95142 -11.87335 -11.66155 -10.98424 -10.80470 -10.73490 -10.46303 -10.01486 -9.69002 -8.87732 -7.84902 -5.19542 1.48499 1.49593 1.50770 1.55930 1.59866 1.84057 2.23502 2.49251 3.14979 3.23216 3.32469 3.36555 3.63184 3.75299 3.79395 3.89182 3.92733 3.93328 4.00356 4.08758 4.21313 4.39122 4.47389 4.56221 4.62055 4.68241 4.68691 4.70875 4.71688 4.80464 4.84295 4.88586 4.92171 4.92445 4.95151 4.96232 5.18291 5.29965 5.36722 5.43734 5.50926 5.56569 5.67894 5.73503 6.10064 6.18257 6.59485 6.88524 7.10404 7.13131 7.23380 7.75642 8.38238 9.24252 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.015620 B = 0.002774 C = 0.002659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1792.144662 B =10090.695503 C =10529.472145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.164 3.836 3 C -0.153 4.153 4 C -0.153 4.153 5 N -0.605 5.605 6 C 0.123 3.877 7 C -0.113 4.113 8 H 0.135 0.865 9 C 0.529 3.471 10 O -0.573 6.573 11 N -0.686 5.686 12 C 0.148 3.852 13 H 0.105 0.895 14 C 0.123 3.877 15 N -0.617 5.617 16 C -0.240 4.240 17 H 0.078 0.922 18 C -0.058 4.058 19 N -0.946 5.946 20 Si 0.973 3.027 21 H -0.295 1.295 22 H -0.278 1.278 23 H -0.281 1.281 24 C 0.161 3.839 25 C 0.085 3.915 26 H 0.086 0.914 27 O -0.561 6.561 28 C -0.138 4.138 29 C 0.516 3.484 30 O -0.563 6.563 31 H 0.046 0.954 32 H 0.080 0.920 33 H 0.048 0.952 34 H 0.066 0.934 35 H 0.088 0.912 36 H 0.047 0.953 37 H 0.051 0.949 38 H 0.087 0.913 39 H 0.068 0.932 40 H 0.082 0.918 41 H 0.102 0.898 42 H 0.409 0.591 43 H 0.040 0.960 44 H 0.041 0.959 45 H 0.247 0.753 46 H 0.030 0.970 47 H 0.014 0.986 48 H 0.395 0.605 49 H 0.120 0.880 50 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.767 13.888 -11.367 19.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.081 3.919 3 C -0.211 4.211 4 C -0.211 4.211 5 N -0.339 5.339 6 C 0.001 3.999 7 C -0.134 4.134 8 H 0.153 0.847 9 C 0.315 3.685 10 O -0.454 6.454 11 N -0.335 5.335 12 C 0.042 3.958 13 H 0.123 0.877 14 C -0.004 4.004 15 N -0.344 5.344 16 C -0.369 4.369 17 H 0.096 0.904 18 C -0.251 4.251 19 N -0.594 5.594 20 Si 0.802 3.198 21 H -0.222 1.222 22 H -0.205 1.205 23 H -0.207 1.207 24 C 0.035 3.965 25 C 0.025 3.975 26 H 0.104 0.896 27 O -0.368 6.368 28 C -0.179 4.179 29 C 0.304 3.696 30 O -0.443 6.443 31 H 0.065 0.935 32 H 0.098 0.902 33 H 0.067 0.933 34 H 0.085 0.915 35 H 0.107 0.893 36 H 0.066 0.934 37 H 0.071 0.929 38 H 0.106 0.894 39 H 0.087 0.913 40 H 0.100 0.900 41 H 0.120 0.880 42 H 0.245 0.755 43 H 0.058 0.942 44 H 0.060 0.940 45 H 0.056 0.944 46 H 0.048 0.952 47 H 0.032 0.968 48 H 0.245 0.755 49 H 0.139 0.861 50 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -7.849 14.704 -12.068 20.578 hybrid contribution 0.314 -1.947 0.868 2.155 sum -7.535 12.757 -11.200 18.573 Atomic orbital electron populations 1.22002 0.92888 1.02224 1.01955 1.20719 0.94743 0.92615 0.83803 1.22161 1.01974 0.94036 1.02939 1.22162 1.02117 1.00456 0.96396 1.48585 1.07172 1.55569 1.22546 1.21899 0.81340 0.98393 0.98304 1.22160 0.92890 1.02961 0.95403 0.84734 1.20360 0.84834 0.81283 0.81977 1.90669 1.45473 1.32193 1.77019 1.45511 1.33471 1.32560 1.21948 1.22075 0.87707 0.99414 0.86622 0.87738 1.22156 0.95240 0.85383 0.97587 1.44519 1.46734 1.01764 1.41423 1.19323 1.17626 0.84530 1.15392 0.90380 1.25500 1.00142 1.00437 0.99056 1.70102 1.35644 1.25140 1.28551 0.85240 0.77867 0.79227 0.77497 1.22172 1.20456 1.20737 1.21649 0.91990 0.91763 0.91067 1.23236 0.82912 0.95482 0.95899 0.89606 1.86364 1.21669 1.80775 1.47979 1.22327 0.92766 1.04713 0.98073 1.20992 0.87114 0.77914 0.83548 1.90709 1.14053 1.61287 1.78209 0.93498 0.90168 0.93261 0.91541 0.89325 0.93420 0.92944 0.89413 0.91268 0.90023 0.87995 0.75515 0.94223 0.94016 0.94367 0.95222 0.96767 0.75530 0.86148 0.87435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.63 7.00 71.98 0.50 -2.13 16 2 C 0.16 2.82 1.20 3.60 0.00 2.83 16 3 C -0.15 -2.19 8.54 71.98 0.61 -1.58 16 4 C -0.15 -2.03 8.49 71.98 0.61 -1.42 16 5 N -0.61 -12.39 2.76 -771.01 -2.13 -14.52 16 6 C 0.12 2.37 5.91 86.83 0.51 2.88 16 7 C -0.11 -2.34 3.54 -10.48 -0.04 -2.37 16 8 H 0.13 2.42 8.14 -2.39 -0.02 2.40 16 9 C 0.53 14.63 7.07 87.66 0.62 15.25 16 10 O -0.57 -18.87 15.21 -3.02 -0.05 -18.92 16 11 N -0.69 -20.45 4.76 -435.60 -2.07 -22.53 16 12 C 0.15 4.83 3.31 46.46 0.15 4.99 16 13 H 0.10 3.27 7.54 -2.38 -0.02 3.25 16 14 C 0.12 4.74 6.95 86.93 0.60 5.35 16 15 N -0.62 -29.06 3.39 -691.55 -2.35 -31.40 16 16 C -0.24 -12.68 10.28 84.03 0.86 -11.81 16 17 H 0.08 4.01 7.83 -2.91 -0.02 3.99 16 18 C -0.06 -3.11 5.49 84.86 0.47 -2.64 16 19 N -0.95 -53.04 10.31 21.65 0.22 -52.81 16 20 Si 0.97 43.85 29.55 68.60 2.03 45.88 16 21 H -0.30 -13.48 7.11 99.48 0.71 -12.77 16 22 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 23 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 24 C 0.16 7.00 5.14 86.73 0.45 7.44 16 25 C 0.09 2.75 4.12 31.78 0.13 2.88 16 26 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16 27 O -0.56 -15.73 12.67 -148.98 -1.89 -17.62 16 28 C -0.14 -2.93 6.37 30.59 0.19 -2.74 16 29 C 0.52 12.86 7.84 87.90 0.69 13.55 16 30 O -0.56 -17.62 13.99 -3.03 -0.04 -17.66 16 31 H 0.05 1.13 7.06 -2.38 -0.02 1.11 16 32 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.05 1.17 7.08 -2.39 -0.02 1.15 16 34 H 0.07 0.90 7.90 -2.39 -0.02 0.88 16 35 H 0.09 0.91 8.14 -2.38 -0.02 0.89 16 36 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 37 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 38 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.07 0.82 7.21 -2.39 -0.02 0.80 16 40 H 0.08 1.77 7.06 -2.39 -0.02 1.76 16 41 H 0.10 1.61 7.12 -2.38 -0.02 1.59 16 42 H 0.41 12.24 8.39 -92.71 -0.78 11.47 16 43 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 44 H 0.04 1.67 8.14 -2.38 -0.02 1.65 16 45 H 0.25 13.65 8.31 -92.71 -0.77 12.88 16 46 H 0.03 1.45 7.30 -2.39 -0.02 1.43 16 47 H 0.01 0.70 7.50 -2.39 -0.02 0.69 16 48 H 0.39 8.45 9.11 -74.05 -0.67 7.77 16 49 H 0.12 2.33 8.14 -2.39 -0.02 2.31 16 50 H 0.11 2.37 7.89 -2.39 -0.02 2.35 16 Total: -1.00 -68.76 393.92 -0.39 -69.15 By element: Atomic # 1 Polarization: 30.44 SS G_CDS: -0.50 Total: 29.94 kcal Atomic # 6 Polarization: 24.11 SS G_CDS: 6.38 Total: 30.49 kcal Atomic # 7 Polarization: -114.94 SS G_CDS: -6.33 Total: -121.26 kcal Atomic # 8 Polarization: -52.22 SS G_CDS: -1.98 Total: -54.20 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Total: -68.76 -0.39 -69.15 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083504981.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.823 kcal (2) G-P(sol) polarization free energy of solvation -68.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds