Wall clock time and date at job start Tue Mar 31 2020 22:31:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52991 * 109.47407 * 2 1 4 4 C 1.52994 * 109.47171 * 239.99423 * 2 1 3 5 5 N 1.46509 * 109.46634 * 120.00100 * 2 1 3 6 6 C 1.46755 * 124.35265 * 59.99953 * 5 2 1 7 7 C 1.54476 * 105.47483 * 162.98124 * 6 5 2 8 8 H 1.09005 * 110.97268 * 267.29735 * 7 6 5 9 9 C 1.50703 * 110.97256 * 143.53034 * 7 6 5 10 10 O 1.21284 * 119.99325 * 6.17534 * 9 7 6 11 11 N 1.34772 * 120.00228 * 186.16835 * 9 7 6 12 12 C 1.46497 * 119.99930 * 180.02562 * 11 9 7 13 13 H 1.08996 * 110.64689 * 34.29658 * 12 11 9 14 14 C 1.54325 * 110.72036 * 271.15625 * 12 11 9 15 15 N 1.47018 * 107.27598 * 219.44541 * 14 12 11 16 16 C 1.36936 * 125.64999 * 178.90250 * 15 14 12 17 17 H 1.07999 * 120.00031 * 359.97438 * 16 15 14 18 18 C 1.38816 * 119.99808 * 180.02562 * 16 15 14 19 19 N 1.31621 * 119.99981 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 120.00001 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.46946 * 359.97438 * 20 18 16 22 22 H 1.48496 * 109.47101 * 119.99652 * 20 18 16 23 23 H 1.48489 * 109.46939 * 239.99732 * 20 18 16 24 24 C 1.47428 * 108.70135 * 358.93861 * 15 14 12 25 25 C 1.55124 * 104.94152 * 24.00547 * 24 15 14 26 26 H 1.09004 * 111.16108 * 205.13569 * 25 24 15 27 27 O 1.42893 * 110.94114 * 81.21654 * 25 24 15 28 28 C 1.54627 * 101.76424 * 25.41616 * 7 6 5 29 29 C 1.34424 * 124.34231 * 239.99459 * 5 2 1 30 30 O 1.21276 * 124.94682 * 0.45878 * 29 5 2 31 31 H 1.09004 * 109.47251 * 300.00193 * 1 2 3 32 32 H 1.09002 * 109.46750 * 60.00089 * 1 2 3 33 33 H 1.09004 * 109.47425 * 180.02562 * 1 2 3 34 34 H 1.09004 * 109.47211 * 179.97438 * 3 2 1 35 35 H 1.09002 * 109.47093 * 299.99701 * 3 2 1 36 36 H 1.08998 * 109.47322 * 60.00043 * 3 2 1 37 37 H 1.09001 * 109.47796 * 300.00228 * 4 2 1 38 38 H 1.09002 * 109.46885 * 60.00571 * 4 2 1 39 39 H 1.09002 * 109.47403 * 179.97438 * 4 2 1 40 40 H 1.08999 * 110.24678 * 43.98589 * 6 5 2 41 41 H 1.09003 * 110.24487 * 281.97930 * 6 5 2 42 42 H 0.96997 * 120.00203 * 359.97438 * 11 9 7 43 43 H 1.09009 * 109.88040 * 338.86188 * 14 12 11 44 44 H 1.08998 * 109.88451 * 99.86524 * 14 12 11 45 45 H 0.97006 * 119.99694 * 180.02562 * 19 18 16 46 46 H 1.09001 * 110.37073 * 142.96714 * 24 15 14 47 47 H 1.09002 * 110.36747 * 265.29400 * 24 15 14 48 48 H 0.96708 * 114.00334 * 67.95266 * 27 25 24 49 49 H 1.09001 * 110.48777 * 93.88219 * 28 7 6 50 50 H 1.09000 * 110.48903 * 216.52672 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2491 5 7 2.0182 -0.6907 1.1963 6 6 1.7230 -2.0907 1.5226 7 6 2.7663 -2.4944 2.5880 8 1 3.6435 -2.9452 2.1239 9 6 2.1622 -3.4229 3.6098 10 8 1.0334 -3.8397 3.4580 11 7 2.8763 -3.7902 4.6922 12 6 2.2893 -4.6932 5.6851 13 1 1.6307 -5.4167 5.2048 14 6 1.5288 -3.8962 6.7659 15 7 1.7967 -4.5460 8.0571 16 6 1.3220 -4.1317 9.2729 17 1 0.6928 -3.2562 9.3371 18 6 1.6504 -4.8362 10.4230 19 7 2.4176 -5.9029 10.3448 20 14 1.0022 -4.2714 12.0815 21 1 0.1681 -3.0564 11.8992 22 1 0.1803 -5.3507 12.6853 23 1 2.1435 -3.9578 12.9781 24 6 2.6619 -5.7173 7.8264 25 6 3.3988 -5.4141 6.4955 26 1 3.7097 -6.3337 5.9995 27 8 4.5157 -4.5504 6.7154 28 6 3.1158 -1.1275 3.2207 29 6 2.7943 -0.1233 2.1359 30 8 3.1797 1.0264 2.1171 31 1 -0.3634 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 -1.0277 0.0005 34 1 3.1301 1.4423 0.0005 35 1 1.6767 1.9562 -0.8900 36 1 1.6767 1.9563 0.8900 37 1 1.6767 -1.7490 -1.2491 38 1 1.6767 -0.2075 -2.1391 39 1 3.1300 -0.7210 -1.2494 40 1 1.8289 -2.7152 0.6356 41 1 0.7154 -2.1789 1.9290 42 1 3.7793 -3.4572 4.8133 43 1 1.8865 -2.8667 6.7877 44 1 0.4595 -3.9124 6.5549 45 1 2.6467 -6.3954 11.1485 46 1 3.3777 -5.8266 8.6410 47 1 2.0593 -6.6201 7.7259 48 1 5.2347 -4.9573 7.2180 49 1 2.5008 -0.9468 4.1024 50 1 4.1743 -1.0855 3.4777 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083504982.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:35 Heat of formation + Delta-G solvation = -83.706471 kcal Electronic energy + Delta-G solvation = -30815.514250 eV Core-core repulsion = 26650.807774 eV Total energy + Delta-G solvation = -4164.706476 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.21943 -39.62650 -37.96478 -36.92888 -35.71034 -34.77575 -34.08192 -31.83485 -30.73408 -28.54495 -28.17194 -27.66109 -27.42047 -26.94645 -24.69454 -23.30484 -21.69830 -20.73052 -20.25398 -19.74698 -18.83685 -17.76769 -17.15832 -16.90166 -16.65128 -15.93735 -15.59164 -15.27811 -14.90564 -14.80332 -14.35517 -14.21234 -14.14393 -14.05893 -13.82379 -13.55853 -13.14848 -13.08512 -12.96503 -12.59742 -12.54197 -12.34315 -12.28879 -11.95264 -11.83909 -11.71011 -11.64260 -11.38406 -11.31990 -11.28023 -11.11529 -10.89909 -10.67009 -10.38967 -10.08440 -9.90403 -9.87975 -9.52153 -9.27390 -8.89298 -8.80075 -8.71611 -6.88480 -5.72733 -3.12552 2.41833 2.60310 2.63997 3.21716 3.37563 3.43715 3.45960 4.03234 4.11246 4.42614 4.50221 4.51348 4.58492 4.66408 4.70321 4.75150 5.01798 5.15182 5.22846 5.28384 5.30476 5.32585 5.37397 5.40548 5.44281 5.46279 5.52551 5.57657 5.64005 5.66839 5.69602 5.75641 5.87010 5.98510 5.99228 6.08148 6.22094 6.43332 6.45798 6.64893 6.87167 6.93190 7.21372 7.53040 7.65521 7.71846 8.01190 8.06310 8.27787 8.31082 9.15087 9.76020 10.38707 11.32524 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.019961 B = 0.002432 C = 0.002353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.381595 B =11511.274955 C =11897.984638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.173 3.827 3 C -0.141 4.141 4 C -0.158 4.158 5 N -0.611 5.611 6 C 0.118 3.882 7 C -0.122 4.122 8 H 0.117 0.883 9 C 0.521 3.479 10 O -0.539 6.539 11 N -0.702 5.702 12 C 0.142 3.858 13 H 0.101 0.899 14 C 0.132 3.868 15 N -0.596 5.596 16 C -0.216 4.216 17 H 0.079 0.921 18 C -0.013 4.013 19 N -0.927 5.927 20 Si 0.916 3.084 21 H -0.280 1.280 22 H -0.290 1.290 23 H -0.290 1.290 24 C 0.127 3.873 25 C 0.067 3.933 26 H 0.059 0.941 27 O -0.561 6.561 28 C -0.148 4.148 29 C 0.522 3.478 30 O -0.527 6.527 31 H 0.061 0.939 32 H 0.068 0.932 33 H 0.061 0.939 34 H 0.068 0.932 35 H 0.057 0.943 36 H 0.069 0.931 37 H 0.060 0.940 38 H 0.069 0.931 39 H 0.060 0.940 40 H 0.083 0.917 41 H 0.092 0.908 42 H 0.409 0.591 43 H 0.029 0.971 44 H 0.028 0.972 45 H 0.252 0.748 46 H 0.116 0.884 47 H 0.022 0.978 48 H 0.380 0.620 49 H 0.111 0.889 50 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.410 5.851 -22.081 23.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.090 3.910 3 C -0.198 4.198 4 C -0.216 4.216 5 N -0.345 5.345 6 C -0.005 4.005 7 C -0.144 4.144 8 H 0.135 0.865 9 C 0.306 3.694 10 O -0.417 6.417 11 N -0.353 5.353 12 C 0.036 3.964 13 H 0.119 0.881 14 C 0.005 3.995 15 N -0.323 5.323 16 C -0.344 4.344 17 H 0.097 0.903 18 C -0.208 4.208 19 N -0.576 5.576 20 Si 0.747 3.253 21 H -0.205 1.205 22 H -0.217 1.217 23 H -0.217 1.217 24 C 0.001 3.999 25 C 0.006 3.994 26 H 0.077 0.923 27 O -0.367 6.367 28 C -0.188 4.188 29 C 0.310 3.690 30 O -0.404 6.404 31 H 0.080 0.920 32 H 0.087 0.913 33 H 0.080 0.920 34 H 0.087 0.913 35 H 0.075 0.925 36 H 0.088 0.912 37 H 0.079 0.921 38 H 0.088 0.912 39 H 0.079 0.921 40 H 0.101 0.899 41 H 0.110 0.890 42 H 0.245 0.755 43 H 0.047 0.953 44 H 0.046 0.954 45 H 0.062 0.938 46 H 0.133 0.867 47 H 0.040 0.960 48 H 0.228 0.772 49 H 0.129 0.871 50 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 2.386 6.564 -22.377 23.441 hybrid contribution 0.341 -0.243 1.292 1.358 sum 2.728 6.321 -21.085 22.180 Atomic orbital electron populations 1.22202 0.94122 1.02688 1.02677 1.20473 0.93993 0.92970 0.83571 1.22100 1.02449 0.93176 1.02071 1.22189 1.01747 1.00841 0.96789 1.48467 1.50856 1.12656 1.22565 1.21909 0.99538 0.81331 0.97709 1.22218 1.00496 0.95510 0.96173 0.86515 1.20046 0.85966 0.81259 0.82147 1.90721 1.18387 1.55673 1.76892 1.45811 1.18812 1.48786 1.21852 1.22187 0.94624 0.91746 0.87799 0.88081 1.21581 0.96608 0.95447 0.85889 1.44283 1.57481 1.29389 1.01102 1.19142 1.24116 1.08584 0.82544 0.90349 1.24761 1.00443 0.97594 0.97957 1.69726 1.41174 1.19766 1.26967 0.85960 0.77962 0.77740 0.83640 1.20499 1.21742 1.21730 1.22641 0.94679 0.89077 0.93472 1.23628 0.86520 0.91040 0.98177 0.92302 1.86226 1.29281 1.43411 1.77828 1.22401 1.05401 0.92121 0.98882 1.20723 0.77519 0.87838 0.82902 1.90731 1.54859 1.17536 1.77268 0.92018 0.91303 0.91961 0.91297 0.92451 0.91184 0.92068 0.91248 0.92120 0.89861 0.89028 0.75483 0.95299 0.95437 0.93756 0.86679 0.96008 0.77231 0.87064 0.87079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.24 8.54 37.16 0.32 -0.92 16 2 C 0.17 1.51 1.20 -131.82 -0.16 1.35 16 3 C -0.14 -1.36 7.00 37.15 0.26 -1.10 16 4 C -0.16 -1.07 8.49 37.15 0.32 -0.75 16 5 N -0.61 -6.08 2.76 -157.58 -0.43 -6.52 16 6 C 0.12 1.10 5.91 -3.13 -0.02 1.08 16 7 C -0.12 -1.14 3.54 -90.14 -0.32 -1.46 16 8 H 0.12 0.81 8.14 -51.93 -0.42 0.39 16 9 C 0.52 6.83 7.07 -10.99 -0.08 6.76 16 10 O -0.54 -8.95 15.26 5.55 0.08 -8.87 16 11 N -0.70 -9.64 5.03 -52.03 -0.26 -9.90 16 12 C 0.14 2.44 3.15 -66.10 -0.21 2.23 16 13 H 0.10 1.79 7.62 -51.93 -0.40 1.39 16 14 C 0.13 2.81 7.00 -3.07 -0.02 2.79 16 15 N -0.60 -14.99 3.40 -169.93 -0.58 -15.57 16 16 C -0.22 -5.97 10.27 -15.06 -0.15 -6.13 16 17 H 0.08 2.14 7.83 -52.49 -0.41 1.73 16 18 C -0.01 -0.35 5.49 -17.43 -0.10 -0.45 16 19 N -0.93 -26.13 10.09 55.49 0.56 -25.57 16 20 Si 0.92 21.93 29.55 -169.99 -5.02 16.91 16 21 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 22 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 23 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 24 C 0.13 2.88 5.62 -2.41 -0.01 2.86 16 25 C 0.07 1.14 4.31 -24.47 -0.11 1.04 16 26 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 27 O -0.56 -8.89 12.23 -35.23 -0.43 -9.32 16 28 C -0.15 -1.47 6.37 -26.74 -0.17 -1.64 16 29 C 0.52 6.20 7.84 -10.86 -0.09 6.12 16 30 O -0.53 -7.82 13.99 5.56 0.08 -7.74 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.06 0.47 7.90 -51.93 -0.41 0.06 16 34 H 0.07 0.76 7.08 -51.93 -0.37 0.40 16 35 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.07 0.82 7.06 -51.93 -0.37 0.45 16 37 H 0.06 0.38 7.21 -51.93 -0.37 0.01 16 38 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.08 0.63 7.12 -51.93 -0.37 0.26 16 41 H 0.09 1.01 7.06 -51.93 -0.37 0.65 16 42 H 0.41 5.03 7.58 -40.82 -0.31 4.72 16 43 H 0.03 0.63 8.03 -51.92 -0.42 0.22 16 44 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.25 6.89 8.31 -40.82 -0.34 6.55 16 46 H 0.12 2.90 5.87 -51.93 -0.30 2.59 16 47 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 48 H 0.38 4.83 9.12 45.56 0.42 5.25 16 49 H 0.11 1.24 7.89 -51.93 -0.41 0.83 16 50 H 0.11 0.94 8.14 -51.93 -0.42 0.51 16 LS Contribution 392.53 15.07 5.92 5.92 Total: -1.00 -33.24 392.53 -8.08 -41.32 By element: Atomic # 1 Polarization: 15.00 SS G_CDS: -7.45 Total: 7.55 kcal Atomic # 6 Polarization: 12.32 SS G_CDS: -0.54 Total: 11.79 kcal Atomic # 7 Polarization: -56.84 SS G_CDS: -0.71 Total: -57.55 kcal Atomic # 8 Polarization: -25.66 SS G_CDS: -0.27 Total: -25.93 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -33.24 -8.08 -41.32 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083504982.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.388 kcal (2) G-P(sol) polarization free energy of solvation -33.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds