Wall clock time and date at job start Tue Mar 31 2020 22:31:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52991 * 109.47407 * 2 1 4 4 C 1.52994 * 109.47171 * 239.99423 * 2 1 3 5 5 N 1.46509 * 109.46634 * 120.00100 * 2 1 3 6 6 C 1.46755 * 124.35265 * 59.99953 * 5 2 1 7 7 C 1.54476 * 105.47483 * 162.98124 * 6 5 2 8 8 H 1.09005 * 110.97268 * 267.29735 * 7 6 5 9 9 C 1.50703 * 110.97256 * 143.53034 * 7 6 5 10 10 O 1.21284 * 119.99325 * 6.17534 * 9 7 6 11 11 N 1.34772 * 120.00228 * 186.16835 * 9 7 6 12 12 C 1.46497 * 119.99930 * 180.02562 * 11 9 7 13 13 H 1.08996 * 110.64689 * 34.29658 * 12 11 9 14 14 C 1.54325 * 110.72036 * 271.15625 * 12 11 9 15 15 N 1.47018 * 107.27598 * 219.44541 * 14 12 11 16 16 C 1.36936 * 125.64999 * 178.90250 * 15 14 12 17 17 H 1.07999 * 120.00031 * 359.97438 * 16 15 14 18 18 C 1.38816 * 119.99808 * 180.02562 * 16 15 14 19 19 N 1.31621 * 119.99981 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 120.00001 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.46946 * 359.97438 * 20 18 16 22 22 H 1.48496 * 109.47101 * 119.99652 * 20 18 16 23 23 H 1.48489 * 109.46939 * 239.99732 * 20 18 16 24 24 C 1.47428 * 108.70135 * 358.93861 * 15 14 12 25 25 C 1.55124 * 104.94152 * 24.00547 * 24 15 14 26 26 H 1.09004 * 111.16108 * 205.13569 * 25 24 15 27 27 O 1.42893 * 110.94114 * 81.21654 * 25 24 15 28 28 C 1.54627 * 101.76424 * 25.41616 * 7 6 5 29 29 C 1.34424 * 124.34231 * 239.99459 * 5 2 1 30 30 O 1.21276 * 124.94682 * 0.45878 * 29 5 2 31 31 H 1.09004 * 109.47251 * 300.00193 * 1 2 3 32 32 H 1.09002 * 109.46750 * 60.00089 * 1 2 3 33 33 H 1.09004 * 109.47425 * 180.02562 * 1 2 3 34 34 H 1.09004 * 109.47211 * 179.97438 * 3 2 1 35 35 H 1.09002 * 109.47093 * 299.99701 * 3 2 1 36 36 H 1.08998 * 109.47322 * 60.00043 * 3 2 1 37 37 H 1.09001 * 109.47796 * 300.00228 * 4 2 1 38 38 H 1.09002 * 109.46885 * 60.00571 * 4 2 1 39 39 H 1.09002 * 109.47403 * 179.97438 * 4 2 1 40 40 H 1.08999 * 110.24678 * 43.98589 * 6 5 2 41 41 H 1.09003 * 110.24487 * 281.97930 * 6 5 2 42 42 H 0.96997 * 120.00203 * 359.97438 * 11 9 7 43 43 H 1.09009 * 109.88040 * 338.86188 * 14 12 11 44 44 H 1.08998 * 109.88451 * 99.86524 * 14 12 11 45 45 H 0.97006 * 119.99694 * 180.02562 * 19 18 16 46 46 H 1.09001 * 110.37073 * 142.96714 * 24 15 14 47 47 H 1.09002 * 110.36747 * 265.29400 * 24 15 14 48 48 H 0.96708 * 114.00334 * 67.95266 * 27 25 24 49 49 H 1.09001 * 110.48777 * 93.88219 * 28 7 6 50 50 H 1.09000 * 110.48903 * 216.52672 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2491 5 7 2.0182 -0.6907 1.1963 6 6 1.7230 -2.0907 1.5226 7 6 2.7663 -2.4944 2.5880 8 1 3.6435 -2.9452 2.1239 9 6 2.1622 -3.4229 3.6098 10 8 1.0334 -3.8397 3.4580 11 7 2.8763 -3.7902 4.6922 12 6 2.2893 -4.6932 5.6851 13 1 1.6307 -5.4167 5.2048 14 6 1.5288 -3.8962 6.7659 15 7 1.7967 -4.5460 8.0571 16 6 1.3220 -4.1317 9.2729 17 1 0.6928 -3.2562 9.3371 18 6 1.6504 -4.8362 10.4230 19 7 2.4176 -5.9029 10.3448 20 14 1.0022 -4.2714 12.0815 21 1 0.1681 -3.0564 11.8992 22 1 0.1803 -5.3507 12.6853 23 1 2.1435 -3.9578 12.9781 24 6 2.6619 -5.7173 7.8264 25 6 3.3988 -5.4141 6.4955 26 1 3.7097 -6.3337 5.9995 27 8 4.5157 -4.5504 6.7154 28 6 3.1158 -1.1275 3.2207 29 6 2.7943 -0.1233 2.1359 30 8 3.1797 1.0264 2.1171 31 1 -0.3634 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 -1.0277 0.0005 34 1 3.1301 1.4423 0.0005 35 1 1.6767 1.9562 -0.8900 36 1 1.6767 1.9563 0.8900 37 1 1.6767 -1.7490 -1.2491 38 1 1.6767 -0.2075 -2.1391 39 1 3.1300 -0.7210 -1.2494 40 1 1.8289 -2.7152 0.6356 41 1 0.7154 -2.1789 1.9290 42 1 3.7793 -3.4572 4.8133 43 1 1.8865 -2.8667 6.7877 44 1 0.4595 -3.9124 6.5549 45 1 2.6467 -6.3954 11.1485 46 1 3.3777 -5.8266 8.6410 47 1 2.0593 -6.6201 7.7259 48 1 5.2347 -4.9573 7.2180 49 1 2.5008 -0.9468 4.1024 50 1 4.1743 -1.0855 3.4777 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083504982.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:34 Heat of formation + Delta-G solvation = -108.843628 kcal Electronic energy + Delta-G solvation = -30816.604279 eV Core-core repulsion = 26650.807774 eV Total energy + Delta-G solvation = -4165.796505 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.10703 -40.80519 -39.38563 -37.78945 -36.56261 -36.34364 -35.45866 -33.61093 -31.71275 -30.20205 -28.98017 -28.72467 -28.23626 -28.02464 -26.48030 -24.38264 -22.48717 -22.36106 -21.61684 -21.01020 -19.68031 -19.22347 -18.51651 -18.17893 -17.53261 -17.01174 -16.85341 -16.71096 -16.23712 -16.02911 -15.74638 -15.31581 -15.08482 -14.88716 -14.71778 -14.68982 -14.61623 -14.35044 -14.17341 -13.96416 -13.48403 -13.24036 -13.20488 -13.08146 -12.99051 -12.87230 -12.77018 -12.63851 -12.48970 -12.40727 -12.22216 -12.08928 -12.05118 -11.95208 -11.89686 -11.81493 -11.04531 -10.85484 -10.70520 -10.46591 -10.08438 -9.69306 -8.89471 -7.81281 -5.24040 1.46109 1.46257 1.50079 1.55577 1.56938 1.81052 2.16384 2.48386 3.14770 3.25842 3.30048 3.31914 3.63696 3.78878 3.80614 3.88940 3.92985 3.93481 3.98771 4.08769 4.18257 4.34297 4.47092 4.51826 4.57263 4.67838 4.70470 4.71761 4.76103 4.79831 4.84235 4.87475 4.92531 4.92732 4.96035 5.01734 5.18241 5.29566 5.35647 5.36885 5.46424 5.50704 5.67889 5.73225 6.10734 6.26658 6.58408 6.93173 7.09244 7.13212 7.23843 7.73899 8.35803 9.20701 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.019961 B = 0.002432 C = 0.002353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.381595 B =11511.274955 C =11897.984638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.164 3.836 3 C -0.134 4.134 4 C -0.151 4.151 5 N -0.606 5.606 6 C 0.119 3.881 7 C -0.105 4.105 8 H 0.155 0.845 9 C 0.524 3.476 10 O -0.574 6.574 11 N -0.693 5.693 12 C 0.155 3.845 13 H 0.100 0.900 14 C 0.131 3.869 15 N -0.617 5.617 16 C -0.238 4.238 17 H 0.072 0.928 18 C -0.060 4.060 19 N -0.944 5.944 20 Si 0.978 3.022 21 H -0.273 1.273 22 H -0.291 1.291 23 H -0.287 1.287 24 C 0.125 3.875 25 C 0.091 3.909 26 H 0.097 0.903 27 O -0.563 6.563 28 C -0.143 4.143 29 C 0.514 3.486 30 O -0.564 6.564 31 H 0.042 0.958 32 H 0.088 0.912 33 H 0.066 0.934 34 H 0.052 0.948 35 H 0.079 0.921 36 H 0.042 0.958 37 H 0.070 0.930 38 H 0.085 0.915 39 H 0.056 0.944 40 H 0.109 0.891 41 H 0.073 0.927 42 H 0.420 0.580 43 H 0.022 0.978 44 H 0.010 0.990 45 H 0.249 0.751 46 H 0.089 0.911 47 H 0.000 1.000 48 H 0.396 0.604 49 H 0.097 0.903 50 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.407 5.545 -24.124 25.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.082 3.918 3 C -0.191 4.191 4 C -0.209 4.209 5 N -0.339 5.339 6 C -0.004 4.004 7 C -0.127 4.127 8 H 0.173 0.827 9 C 0.311 3.689 10 O -0.453 6.453 11 N -0.345 5.345 12 C 0.048 3.952 13 H 0.118 0.882 14 C 0.004 3.996 15 N -0.343 5.343 16 C -0.367 4.367 17 H 0.090 0.910 18 C -0.253 4.253 19 N -0.594 5.594 20 Si 0.806 3.194 21 H -0.198 1.198 22 H -0.218 1.218 23 H -0.214 1.214 24 C -0.001 4.001 25 C 0.030 3.970 26 H 0.114 0.886 27 O -0.371 6.371 28 C -0.184 4.184 29 C 0.303 3.697 30 O -0.444 6.444 31 H 0.061 0.939 32 H 0.106 0.894 33 H 0.085 0.915 34 H 0.071 0.929 35 H 0.097 0.903 36 H 0.061 0.939 37 H 0.089 0.911 38 H 0.104 0.896 39 H 0.075 0.925 40 H 0.128 0.872 41 H 0.091 0.909 42 H 0.258 0.742 43 H 0.040 0.960 44 H 0.028 0.972 45 H 0.059 0.941 46 H 0.107 0.893 47 H 0.018 0.982 48 H 0.246 0.754 49 H 0.115 0.885 50 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 3.404 6.255 -24.455 25.470 hybrid contribution -0.031 -0.110 1.924 1.928 sum 3.373 6.145 -22.530 23.596 Atomic orbital electron populations 1.22180 0.93441 1.02971 1.02732 1.20699 0.94538 0.92531 0.84069 1.22003 1.01285 0.94062 1.01766 1.22140 1.01475 1.01272 0.96004 1.48587 1.49885 1.12905 1.22530 1.21950 0.98538 0.81199 0.98702 1.22185 1.01454 0.94162 0.94858 0.82715 1.20614 0.85304 0.80862 0.82128 1.90719 1.20013 1.56992 1.77596 1.45659 1.19219 1.48361 1.21217 1.21814 0.94343 0.91578 0.87428 0.88209 1.21656 0.96261 0.95614 0.86059 1.44551 1.57925 1.30239 1.01573 1.19397 1.24475 1.08699 0.84168 0.91035 1.25520 1.00941 0.97900 1.00938 1.69949 1.41718 1.20335 1.27424 0.85018 0.77365 0.77362 0.79612 1.19822 1.21751 1.21417 1.22554 0.93892 0.87676 0.95947 1.23316 0.86310 0.92511 0.94834 0.88562 1.86196 1.29226 1.43620 1.78024 1.22382 1.06385 0.91853 0.97749 1.21033 0.77557 0.87623 0.83519 1.90717 1.56467 1.19052 1.78134 0.93906 0.89358 0.91514 0.92932 0.90270 0.93894 0.91058 0.89622 0.92487 0.87248 0.90897 0.74229 0.95986 0.97245 0.94088 0.89275 0.98236 0.75389 0.88518 0.85096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.21 8.54 71.98 0.61 -1.59 16 2 C 0.16 2.60 1.20 3.60 0.00 2.61 16 3 C -0.13 -2.52 7.00 71.98 0.50 -2.01 16 4 C -0.15 -1.61 8.49 71.98 0.61 -1.00 16 5 N -0.61 -11.22 2.76 -771.07 -2.13 -13.35 16 6 C 0.12 1.95 5.91 86.83 0.51 2.46 16 7 C -0.11 -1.67 3.54 -10.48 -0.04 -1.71 16 8 H 0.16 1.40 8.14 -2.38 -0.02 1.38 16 9 C 0.52 12.72 7.07 87.66 0.62 13.34 16 10 O -0.57 -18.44 15.26 -3.04 -0.05 -18.49 16 11 N -0.69 -17.56 5.03 -436.92 -2.20 -19.76 16 12 C 0.15 5.16 3.15 46.18 0.15 5.31 16 13 H 0.10 3.42 7.62 -2.39 -0.02 3.40 16 14 C 0.13 5.67 7.00 86.73 0.61 6.28 16 15 N -0.62 -31.64 3.40 -691.54 -2.35 -33.99 16 16 C -0.24 -13.51 10.27 84.03 0.86 -12.65 16 17 H 0.07 4.01 7.83 -2.91 -0.02 3.99 16 18 C -0.06 -3.37 5.49 84.86 0.47 -2.91 16 19 N -0.94 -54.11 10.09 21.65 0.22 -53.90 16 20 Si 0.98 45.56 29.55 68.60 2.03 47.59 16 21 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 22 H -0.29 -13.47 7.11 99.48 0.71 -12.77 16 23 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 24 C 0.12 5.70 5.62 86.93 0.49 6.19 16 25 C 0.09 2.94 4.31 32.06 0.14 3.08 16 26 H 0.10 2.50 8.14 -2.38 -0.02 2.48 16 27 O -0.56 -16.47 12.23 -148.98 -1.82 -18.29 16 28 C -0.14 -2.63 6.37 30.59 0.19 -2.43 16 29 C 0.51 11.86 7.84 87.90 0.69 12.55 16 30 O -0.56 -16.93 13.99 -3.02 -0.04 -16.97 16 31 H 0.04 0.76 8.14 -2.38 -0.02 0.74 16 32 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.07 0.89 7.90 -2.39 -0.02 0.87 16 34 H 0.05 1.16 7.08 -2.38 -0.02 1.14 16 35 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.04 1.03 7.06 -2.39 -0.02 1.01 16 37 H 0.07 0.63 7.21 -2.39 -0.02 0.62 16 38 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 39 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 40 H 0.11 1.27 7.12 -2.39 -0.02 1.25 16 41 H 0.07 1.53 7.06 -2.39 -0.02 1.51 16 42 H 0.42 9.05 7.58 -92.71 -0.70 8.34 16 43 H 0.02 0.98 8.03 -2.38 -0.02 0.96 16 44 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 45 H 0.25 13.81 8.31 -92.70 -0.77 13.04 16 46 H 0.09 4.56 5.87 -2.39 -0.01 4.55 16 47 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 16 48 H 0.40 9.08 9.12 -74.05 -0.68 8.41 16 49 H 0.10 2.10 7.89 -2.39 -0.02 2.08 16 50 H 0.13 1.88 8.14 -2.39 -0.02 1.86 16 Total: -1.00 -74.89 392.53 -0.33 -75.23 By element: Atomic # 1 Polarization: 24.83 SS G_CDS: -0.42 Total: 24.41 kcal Atomic # 6 Polarization: 21.09 SS G_CDS: 6.42 Total: 27.51 kcal Atomic # 7 Polarization: -114.53 SS G_CDS: -6.45 Total: -120.99 kcal Atomic # 8 Polarization: -51.84 SS G_CDS: -1.91 Total: -53.75 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 2.03 Total: 47.59 kcal Total: -74.89 -0.33 -75.23 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083504982.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.618 kcal (2) G-P(sol) polarization free energy of solvation -74.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds