Wall clock time and date at job start Tue Mar 31 2020 23:09:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47361 * 2 1 4 4 C 1.50699 * 109.47033 * 119.99933 * 2 1 3 5 5 O 1.21286 * 119.99641 * 330.29330 * 4 2 1 6 6 N 1.34770 * 120.00334 * 150.29061 * 4 2 1 7 7 C 1.47185 * 125.73611 * 4.93609 * 6 4 2 8 8 C 1.54326 * 107.29530 * 179.03906 * 7 6 4 9 9 C 1.55160 * 102.94260 * 337.71299 * 8 7 6 10 10 C 1.47430 * 125.64914 * 184.87300 * 6 4 2 11 11 H 1.09005 * 110.36650 * 85.15468 * 10 6 4 12 12 C 1.50697 * 110.36999 * 322.94008 * 10 6 4 13 13 O 1.21288 * 119.99389 * 332.85763 * 12 10 6 14 14 N 1.34771 * 120.00465 * 152.85656 * 12 10 6 15 15 C 1.46494 * 120.00350 * 180.02562 * 14 12 10 16 16 H 1.08997 * 110.64003 * 31.85653 * 15 14 12 17 17 C 1.54322 * 110.87221 * 268.61154 * 15 14 12 18 18 N 1.47026 * 107.27534 * 219.37026 * 17 15 14 19 19 C 1.36931 * 125.65184 * 178.97486 * 18 17 15 20 20 H 1.07999 * 119.99995 * 359.97438 * 19 18 17 21 21 C 1.38810 * 119.99958 * 179.97438 * 19 18 17 22 22 N 1.31624 * 120.00248 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99980 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47127 * 0.02562 * 23 21 19 25 25 H 1.48507 * 109.46828 * 119.99986 * 23 21 19 26 26 H 1.48503 * 109.47193 * 239.99766 * 23 21 19 27 27 C 1.47431 * 108.69781 * 358.93996 * 18 17 15 28 28 C 1.54910 * 104.83221 * 24.13024 * 27 18 17 29 29 H 1.09005 * 111.00129 * 204.91514 * 28 27 18 30 30 O 1.42898 * 111.00791 * 81.06259 * 28 27 18 31 31 H 1.08995 * 109.47091 * 300.00500 * 1 2 3 32 32 H 1.09008 * 109.46571 * 60.00003 * 1 2 3 33 33 H 1.08997 * 109.47202 * 179.97438 * 1 2 3 34 34 H 1.08995 * 109.47091 * 239.99500 * 2 1 3 35 35 H 1.09005 * 109.47158 * 177.76618 * 3 2 1 36 36 H 1.08997 * 109.47228 * 297.76396 * 3 2 1 37 37 H 1.08997 * 109.47183 * 57.76574 * 3 2 1 38 38 H 1.08992 * 109.94895 * 59.57028 * 7 6 4 39 39 H 1.09006 * 109.92177 * 298.49019 * 7 6 4 40 40 H 1.09003 * 110.71878 * 219.35222 * 8 7 6 41 41 H 1.08998 * 110.72273 * 96.07693 * 8 7 6 42 42 H 1.09002 * 111.00422 * 277.43544 * 9 8 7 43 43 H 1.08994 * 111.03992 * 153.58939 * 9 8 7 44 44 H 0.97002 * 119.99479 * 359.97438 * 14 12 10 45 45 H 1.08996 * 109.88642 * 338.79126 * 17 15 14 46 46 H 1.09002 * 109.88553 * 99.95491 * 17 15 14 47 47 H 0.96994 * 120.00404 * 180.02562 * 22 21 19 48 48 H 1.08991 * 110.36708 * 265.28817 * 27 18 17 49 49 H 1.09004 * 110.36298 * 142.96365 * 27 18 17 50 50 H 0.96702 * 114.00198 * 61.45294 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 1.3743 -0.6975 2.2492 6 7 3.2127 -1.3601 1.1989 7 6 4.1574 -1.3720 0.0703 8 6 5.3724 -2.2221 0.4981 9 6 5.3033 -2.1722 2.0473 10 6 3.7734 -2.1767 2.2908 11 1 3.3846 -3.1939 2.2419 12 6 3.4531 -1.5575 3.6268 13 8 3.2777 -0.3605 3.7138 14 7 3.3614 -2.3336 4.7247 15 6 3.0494 -1.7317 6.0233 16 1 2.4036 -0.8625 5.8987 17 6 4.3409 -1.3489 6.7764 18 7 4.1310 -1.6721 8.1953 19 6 5.0487 -1.5008 9.1970 20 1 6.0246 -1.0966 8.9720 21 6 4.7246 -1.8465 10.5017 22 7 3.5354 -2.3396 10.7759 23 14 5.9767 -1.6135 11.8682 24 1 7.2276 -1.0476 11.3022 25 1 5.4295 -0.6822 12.8874 26 1 6.2682 -2.9247 12.5015 27 6 2.7685 -2.2104 8.3609 28 6 2.3923 -2.7730 6.9675 29 1 1.3107 -2.7940 6.8336 30 8 2.9561 -4.0711 6.7698 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5139 -0.8901 33 1 -0.3633 -1.0276 -0.0005 34 1 1.8933 -0.5139 -0.8899 35 1 3.1294 1.4426 0.0401 36 1 1.7099 1.9446 -0.9093 37 1 1.6444 1.9677 0.8692 38 1 4.4780 -0.3555 -0.1571 39 1 3.6842 -1.8161 -0.8055 40 1 6.3002 -1.7769 0.1388 41 1 5.2713 -3.2468 0.1404 42 1 5.7569 -1.2576 2.4293 43 1 5.7717 -3.0519 2.4885 44 1 3.5013 -3.2910 4.6549 45 1 5.1815 -1.9224 6.3860 46 1 4.5332 -0.2819 6.6639 47 1 3.3088 -2.5808 11.6876 48 1 2.0793 -1.4165 8.6482 49 1 2.7632 -3.0066 9.1055 50 1 2.6475 -4.7344 7.4023 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001084070480.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:09:14 Heat of formation + Delta-G solvation = -114.666558 kcal Electronic energy + Delta-G solvation = -31301.333710 eV Core-core repulsion = 27135.284704 eV Total energy + Delta-G solvation = -4166.049006 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.83414 -40.50395 -39.31022 -38.19779 -36.39912 -35.47979 -35.35653 -33.64627 -32.50264 -31.06096 -30.02032 -28.64001 -28.10090 -26.48420 -25.70036 -23.71557 -22.66965 -22.40206 -21.69021 -21.26471 -19.91817 -19.19584 -18.58209 -18.40090 -17.94835 -17.04016 -16.80043 -16.57755 -16.16463 -16.08998 -15.76002 -15.52236 -15.22356 -14.98177 -14.72990 -14.47980 -14.37356 -14.26026 -14.15457 -13.70813 -13.58638 -13.36979 -13.26085 -13.14787 -13.00538 -12.81052 -12.77621 -12.64602 -12.33090 -12.29304 -12.11684 -12.10420 -11.95139 -11.90811 -11.86146 -11.69111 -10.99051 -10.83339 -10.77230 -10.67631 -10.08277 -9.63768 -8.95242 -7.83449 -5.27790 1.44911 1.46249 1.53232 1.56721 1.66098 1.95508 2.22990 2.47371 3.15510 3.27673 3.36520 3.56081 3.62358 3.72238 3.78102 3.84319 3.93421 3.94277 4.04998 4.10040 4.19842 4.24800 4.43077 4.44263 4.46041 4.67100 4.71206 4.73305 4.78457 4.83278 4.85214 4.88251 4.88344 4.94872 4.99066 5.09269 5.22111 5.25507 5.28502 5.29811 5.36806 5.42151 5.48703 5.65257 6.20255 6.47644 6.63144 6.84778 7.04470 7.20753 7.35502 7.68465 8.32509 9.19273 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.018921 B = 0.002715 C = 0.002612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.443799 B =10310.296519 C =10715.974894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.099 4.099 3 C -0.136 4.136 4 C 0.517 3.483 5 O -0.572 6.572 6 N -0.611 5.611 7 C 0.092 3.908 8 C -0.115 4.115 9 C -0.120 4.120 10 C 0.115 3.885 11 H 0.114 0.886 12 C 0.506 3.494 13 O -0.568 6.568 14 N -0.698 5.698 15 C 0.158 3.842 16 H 0.077 0.923 17 C 0.137 3.863 18 N -0.615 5.615 19 C -0.241 4.241 20 H 0.075 0.925 21 C -0.062 4.062 22 N -0.947 5.947 23 Si 0.984 3.016 24 H -0.271 1.271 25 H -0.292 1.292 26 H -0.285 1.285 27 C 0.129 3.871 28 C 0.092 3.908 29 H 0.081 0.919 30 O -0.558 6.558 31 H 0.036 0.964 32 H 0.093 0.907 33 H 0.053 0.947 34 H 0.125 0.875 35 H 0.060 0.940 36 H 0.098 0.902 37 H 0.032 0.968 38 H 0.075 0.925 39 H 0.103 0.897 40 H 0.107 0.893 41 H 0.105 0.895 42 H 0.060 0.940 43 H 0.112 0.888 44 H 0.416 0.584 45 H 0.031 0.969 46 H 0.004 0.996 47 H 0.250 0.750 48 H -0.005 1.005 49 H 0.096 0.904 50 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.152 -3.769 -29.079 29.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.121 4.121 3 C -0.193 4.193 4 C 0.307 3.693 5 O -0.450 6.450 6 N -0.347 5.347 7 C -0.029 4.029 8 C -0.153 4.153 9 C -0.159 4.159 10 C 0.008 3.992 11 H 0.132 0.868 12 C 0.292 3.708 13 O -0.445 6.445 14 N -0.351 5.351 15 C 0.051 3.949 16 H 0.095 0.905 17 C 0.010 3.990 18 N -0.341 5.341 19 C -0.370 4.370 20 H 0.093 0.907 21 C -0.254 4.254 22 N -0.596 5.596 23 Si 0.812 3.188 24 H -0.195 1.195 25 H -0.219 1.219 26 H -0.211 1.211 27 C 0.003 3.997 28 C 0.031 3.969 29 H 0.099 0.901 30 O -0.367 6.367 31 H 0.056 0.944 32 H 0.111 0.889 33 H 0.072 0.928 34 H 0.143 0.857 35 H 0.079 0.921 36 H 0.116 0.884 37 H 0.051 0.949 38 H 0.094 0.906 39 H 0.121 0.879 40 H 0.125 0.875 41 H 0.124 0.876 42 H 0.079 0.921 43 H 0.130 0.870 44 H 0.253 0.747 45 H 0.049 0.951 46 H 0.022 0.978 47 H 0.060 0.940 48 H 0.013 0.987 49 H 0.114 0.886 50 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -0.070 -2.578 -28.783 28.898 hybrid contribution 0.054 -0.055 2.121 2.123 sum -0.016 -2.633 -26.661 26.791 Atomic orbital electron populations 1.21662 0.92637 1.02255 1.02551 1.21317 0.97975 0.97583 0.95176 1.21697 1.01289 0.93410 1.02923 1.21242 0.79638 0.77773 0.90623 1.90737 1.58066 1.61178 1.35061 1.48591 1.19396 1.50283 1.16391 1.22452 0.89805 1.01972 0.88656 1.22684 0.98117 1.02191 0.92268 1.22806 0.89767 1.04076 0.99214 1.22016 0.97580 0.95573 0.84057 0.86848 1.21254 0.75685 0.87059 0.86759 1.90670 1.50154 1.17150 1.86564 1.45583 1.71641 1.11871 1.06004 1.21630 0.95473 0.95331 0.82425 0.90516 1.21579 0.96223 0.96023 0.85154 1.44569 1.12701 1.74491 1.02357 1.19442 0.94467 1.35677 0.87406 0.90662 1.25609 0.99166 1.01446 0.99217 1.69949 1.20899 1.50047 1.18719 0.84927 0.78097 0.77148 0.78602 1.19538 1.21875 1.21117 1.22493 0.84549 0.97822 0.94798 1.23198 0.95748 0.83474 0.94482 0.90103 1.86163 1.72679 1.18881 1.58949 0.94447 0.88860 0.92782 0.85729 0.92107 0.88363 0.94893 0.90625 0.87893 0.87482 0.87620 0.92136 0.87007 0.74666 0.95146 0.97771 0.93995 0.98701 0.88633 0.75390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.43 8.79 71.98 0.63 -1.80 16 2 C -0.10 -1.78 2.80 -11.54 -0.03 -1.81 16 3 C -0.14 -2.31 9.17 71.98 0.66 -1.65 16 4 C 0.52 14.41 6.33 87.66 0.55 14.97 16 5 O -0.57 -22.69 13.72 18.86 0.26 -22.43 16 6 N -0.61 -13.49 3.13 -791.83 -2.47 -15.96 16 7 C 0.09 1.00 6.23 86.70 0.54 1.54 16 8 C -0.12 -0.89 6.95 31.78 0.22 -0.67 16 9 C -0.12 -1.94 6.49 31.99 0.21 -1.73 16 10 C 0.11 2.68 3.56 44.72 0.16 2.84 16 11 H 0.11 2.15 8.14 -2.38 -0.02 2.13 16 12 C 0.51 17.78 5.82 87.66 0.51 18.29 16 13 O -0.57 -25.55 14.21 18.85 0.27 -25.28 16 14 N -0.70 -24.23 5.08 -436.94 -2.22 -26.45 16 15 C 0.16 6.65 3.20 46.18 0.15 6.80 16 16 H 0.08 3.60 7.55 -2.39 -0.02 3.58 16 17 C 0.14 6.63 7.00 86.73 0.61 7.24 16 18 N -0.61 -33.75 3.39 -691.98 -2.35 -36.10 16 19 C -0.24 -14.14 10.27 84.03 0.86 -13.28 16 20 H 0.08 4.32 7.83 -2.91 -0.02 4.29 16 21 C -0.06 -3.55 5.49 84.86 0.47 -3.09 16 22 N -0.95 -56.01 10.09 21.65 0.22 -55.79 16 23 Si 0.98 46.39 29.55 68.60 2.03 48.42 16 24 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 25 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 26 H -0.28 -13.09 7.11 99.48 0.71 -12.39 16 27 C 0.13 6.51 5.62 86.85 0.49 7.00 16 28 C 0.09 3.63 4.28 31.99 0.14 3.76 16 29 H 0.08 2.88 8.14 -2.38 -0.02 2.86 16 30 O -0.56 -19.26 12.25 -148.98 -1.82 -21.09 16 31 H 0.04 0.91 7.85 -2.39 -0.02 0.89 16 32 H 0.09 1.09 8.14 -2.38 -0.02 1.07 16 33 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.12 1.25 7.16 -2.39 -0.02 1.24 16 35 H 0.06 0.99 7.60 -2.38 -0.02 0.98 16 36 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.03 0.77 8.14 -2.39 -0.02 0.75 16 38 H 0.08 0.76 7.60 -2.39 -0.02 0.75 16 39 H 0.10 0.52 7.75 -2.38 -0.02 0.50 16 40 H 0.11 0.48 8.14 -2.39 -0.02 0.46 16 41 H 0.11 0.38 8.14 -2.39 -0.02 0.36 16 42 H 0.06 1.28 8.05 -2.39 -0.02 1.26 16 43 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 44 H 0.42 12.33 7.60 -92.71 -0.70 11.63 16 45 H 0.03 1.45 8.03 -2.39 -0.02 1.43 16 46 H 0.00 0.22 8.14 -2.39 -0.02 0.20 16 47 H 0.25 14.25 8.31 -92.71 -0.77 13.48 16 48 H 0.00 -0.27 8.14 -2.39 -0.02 -0.29 16 49 H 0.10 5.20 5.87 -2.38 -0.01 5.19 16 50 H 0.40 11.08 9.11 -74.06 -0.67 10.41 16 Total: -1.00 -86.33 394.63 -0.36 -86.69 By element: Atomic # 1 Polarization: 30.01 SS G_CDS: -0.43 Total: 29.58 kcal Atomic # 6 Polarization: 32.24 SS G_CDS: 6.16 Total: 38.41 kcal Atomic # 7 Polarization: -127.48 SS G_CDS: -6.83 Total: -134.30 kcal Atomic # 8 Polarization: -67.50 SS G_CDS: -1.30 Total: -68.80 kcal Atomic # 14 Polarization: 46.39 SS G_CDS: 2.03 Total: 48.42 kcal Total: -86.33 -0.36 -86.69 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084070480.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.972 kcal (2) G-P(sol) polarization free energy of solvation -86.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds