Wall clock time and date at job start Tue Mar 31 2020 23:09:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.47002 * 2 1 4 4 C 1.50701 * 109.47259 * 119.99880 * 2 1 3 5 5 O 1.21280 * 120.00008 * 295.28787 * 4 2 1 6 6 N 1.34776 * 120.00045 * 115.28910 * 4 2 1 7 7 C 1.47424 * 125.64985 * 175.94423 * 6 4 2 8 8 C 1.54907 * 104.83483 * 204.16298 * 7 6 4 9 9 C 1.55539 * 101.59709 * 322.95837 * 8 7 6 10 10 C 1.47025 * 125.64979 * 355.98541 * 6 4 2 11 11 H 1.09000 * 109.88051 * 298.47921 * 10 6 4 12 12 C 1.50709 * 109.87953 * 59.48759 * 10 6 4 13 13 O 1.21277 * 119.99768 * 359.68929 * 12 10 6 14 14 N 1.34772 * 119.99771 * 179.68359 * 12 10 6 15 15 C 1.46503 * 120.00039 * 179.97438 * 14 12 10 16 16 H 1.09005 * 110.88357 * 31.12643 * 15 14 12 17 17 C 1.54900 * 111.00675 * 267.20164 * 15 14 12 18 18 N 1.47428 * 104.83208 * 278.93122 * 17 15 14 19 19 C 1.36934 * 125.64962 * 156.13353 * 18 17 15 20 20 H 1.08006 * 119.99844 * 359.72160 * 19 18 17 21 21 C 1.38806 * 120.00213 * 179.71648 * 19 18 17 22 22 N 1.31624 * 120.00025 * 0.02562 * 21 19 18 23 23 Si 1.86805 * 120.00247 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.47358 * 89.99889 * 23 21 19 25 25 H 1.48502 * 109.47311 * 210.00238 * 23 21 19 26 26 H 1.48500 * 109.46860 * 329.99913 * 23 21 19 27 27 C 1.47019 * 108.70189 * 335.87440 * 18 17 15 28 28 C 1.54319 * 107.27221 * 1.05653 * 27 18 17 29 29 H 1.08999 * 110.72426 * 263.65366 * 28 27 18 30 30 O 1.42899 * 110.72162 * 140.55873 * 28 27 18 31 31 H 1.08997 * 109.47293 * 58.86706 * 1 2 3 32 32 H 1.09006 * 109.47014 * 178.86507 * 1 2 3 33 33 H 1.09000 * 109.47545 * 298.86162 * 1 2 3 34 34 H 1.09001 * 109.47013 * 239.99645 * 2 1 3 35 35 H 1.09001 * 109.46887 * 180.02562 * 3 2 1 36 36 H 1.08996 * 109.46959 * 299.99465 * 3 2 1 37 37 H 1.08995 * 109.47123 * 60.00126 * 3 2 1 38 38 H 1.09003 * 110.36958 * 323.00628 * 7 6 4 39 39 H 1.09003 * 110.36391 * 85.21640 * 7 6 4 40 40 H 1.09004 * 110.99999 * 81.06158 * 8 7 6 41 41 H 1.08994 * 111.00683 * 204.87625 * 8 7 6 42 42 H 1.09002 * 110.78493 * 277.23996 * 9 8 7 43 43 H 1.09000 * 110.83842 * 153.84532 * 9 8 7 44 44 H 0.97000 * 120.00090 * 0.02562 * 14 12 10 45 45 H 1.08999 * 110.36690 * 160.09738 * 17 15 14 46 46 H 1.08997 * 110.36945 * 37.76874 * 17 15 14 47 47 H 0.97003 * 119.99894 * 179.97438 * 22 21 19 48 48 H 1.09002 * 109.88439 * 120.47132 * 27 18 17 49 49 H 1.08995 * 109.88262 * 241.48378 * 27 18 17 50 50 H 0.96694 * 114.00329 * 61.45104 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 1.8115 -0.2486 2.3299 6 7 2.7270 -1.8589 1.1091 7 6 3.3465 -2.6095 2.2165 8 6 4.4855 -3.4247 1.5548 9 6 3.8418 -3.8130 0.1931 10 6 2.9934 -2.5703 -0.1497 11 1 2.0533 -2.8780 -0.6076 12 6 3.7541 -1.6748 -1.0934 13 8 4.0446 -0.5464 -0.7569 14 7 4.1116 -2.1279 -2.3113 15 6 4.8506 -1.2572 -3.2290 16 1 5.4879 -0.5648 -2.6790 17 6 3.8848 -0.4958 -4.1707 18 7 3.5575 -1.4608 -5.2361 19 6 2.4330 -1.4363 -6.0172 20 1 1.6921 -0.6638 -5.8730 21 6 2.2455 -2.4042 -6.9943 22 7 3.1482 -3.3458 -7.1698 23 14 0.7118 -2.3704 -8.0603 24 1 0.9693 -1.5518 -9.2722 25 1 0.3590 -3.7552 -8.4641 26 1 -0.4121 -1.7774 -7.2920 27 6 4.6413 -2.4501 -5.3253 28 6 5.6793 -2.0916 -4.2411 29 1 6.4889 -1.4967 -4.6639 30 8 6.1925 -3.2729 -3.6221 31 1 -0.3634 0.5313 -0.8796 32 1 -0.3633 -1.0275 -0.0204 33 1 -0.3634 0.4960 0.9000 34 1 1.8933 -0.5139 -0.8900 35 1 3.1299 1.4425 -0.0005 36 1 1.6766 1.9563 -0.8900 37 1 1.6766 1.9563 0.8900 38 1 3.7532 -1.9232 2.9593 39 1 2.6179 -3.2770 2.6766 40 1 5.3720 -2.8080 1.4065 41 1 4.7230 -4.3118 2.1418 42 1 3.2090 -4.6939 0.3016 43 1 4.6076 -3.9780 -0.5648 44 1 3.8790 -3.0303 -2.5806 45 1 4.3776 0.3808 -4.5912 46 1 2.9826 -0.2036 -3.6333 47 1 3.0170 -4.0224 -7.8524 48 1 4.2465 -3.4499 -5.1442 49 1 5.1024 -2.4069 -6.3119 50 1 6.6529 -3.8673 -4.2302 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001084070481.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:09:18 Heat of formation + Delta-G solvation = -111.046097 kcal Electronic energy + Delta-G solvation = -32248.858595 eV Core-core repulsion = 28082.966584 eV Total energy + Delta-G solvation = -4165.892011 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.03006 -40.52295 -39.34118 -38.13808 -36.56381 -35.50056 -35.14828 -33.57889 -32.48495 -31.02884 -29.82332 -28.65479 -28.15094 -26.34968 -25.74505 -24.07839 -22.38227 -22.14042 -22.01974 -21.13597 -19.94528 -19.01247 -18.67078 -18.34747 -18.04496 -17.33840 -16.72570 -16.46595 -16.35377 -15.96129 -15.76478 -15.41061 -15.22114 -15.10483 -14.62314 -14.47603 -14.16147 -14.11745 -13.94311 -13.84824 -13.69460 -13.51005 -13.13323 -13.08793 -13.05682 -13.00537 -12.75599 -12.50020 -12.36656 -12.20948 -12.10230 -12.03500 -11.98988 -11.86916 -11.85791 -11.65441 -10.94997 -10.82128 -10.79129 -10.73019 -9.98583 -9.77685 -8.86580 -7.84169 -5.18322 1.45214 1.48700 1.49964 1.57538 1.59216 1.83482 2.28172 2.49782 3.18596 3.29310 3.37672 3.46865 3.63967 3.72755 3.77442 3.88670 3.91164 4.00260 4.02147 4.11780 4.19730 4.39311 4.41393 4.44129 4.62169 4.67821 4.68567 4.72900 4.76481 4.81241 4.83674 4.87067 4.88393 4.94325 5.00766 5.01949 5.13137 5.20211 5.25516 5.32004 5.45013 5.52256 5.58960 5.74720 6.19145 6.28562 6.62492 6.90206 7.05304 7.11866 7.26160 7.76397 8.39029 9.25186 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.012020 B = 0.003963 C = 0.003425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2328.947026 B = 7063.743497 C = 8173.094781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.104 4.104 3 C -0.122 4.122 4 C 0.547 3.453 5 O -0.582 6.582 6 N -0.603 5.603 7 C 0.098 3.902 8 C -0.121 4.121 9 C -0.115 4.115 10 C 0.108 3.892 11 H 0.117 0.883 12 C 0.500 3.500 13 O -0.562 6.562 14 N -0.683 5.683 15 C 0.152 3.848 16 H 0.099 0.901 17 C 0.124 3.876 18 N -0.615 5.615 19 C -0.238 4.238 20 H 0.076 0.924 21 C -0.054 4.054 22 N -0.944 5.944 23 Si 0.969 3.031 24 H -0.291 1.291 25 H -0.294 1.294 26 H -0.273 1.273 27 C 0.161 3.839 28 C 0.087 3.913 29 H 0.083 0.917 30 O -0.559 6.559 31 H 0.078 0.922 32 H 0.062 0.938 33 H 0.059 0.941 34 H 0.079 0.921 35 H 0.050 0.950 36 H 0.071 0.929 37 H 0.054 0.946 38 H 0.062 0.938 39 H 0.088 0.912 40 H 0.062 0.938 41 H 0.121 0.879 42 H 0.118 0.882 43 H 0.095 0.905 44 H 0.410 0.590 45 H 0.035 0.965 46 H 0.040 0.960 47 H 0.247 0.753 48 H 0.032 0.968 49 H 0.014 0.986 50 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.196 -3.502 13.639 14.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.125 4.125 3 C -0.180 4.180 4 C 0.338 3.662 5 O -0.462 6.462 6 N -0.335 5.335 7 C -0.024 4.024 8 C -0.159 4.159 9 C -0.153 4.153 10 C 0.001 3.999 11 H 0.134 0.866 12 C 0.286 3.714 13 O -0.441 6.441 14 N -0.333 5.333 15 C 0.045 3.955 16 H 0.117 0.883 17 C -0.003 4.003 18 N -0.342 5.342 19 C -0.367 4.367 20 H 0.094 0.906 21 C -0.248 4.248 22 N -0.593 5.593 23 Si 0.799 3.201 24 H -0.218 1.218 25 H -0.220 1.220 26 H -0.198 1.198 27 C 0.036 3.964 28 C 0.027 3.973 29 H 0.101 0.899 30 O -0.366 6.366 31 H 0.097 0.903 32 H 0.081 0.919 33 H 0.078 0.922 34 H 0.097 0.903 35 H 0.069 0.931 36 H 0.090 0.910 37 H 0.073 0.927 38 H 0.080 0.920 39 H 0.106 0.894 40 H 0.081 0.919 41 H 0.139 0.861 42 H 0.137 0.863 43 H 0.113 0.887 44 H 0.246 0.754 45 H 0.053 0.947 46 H 0.058 0.942 47 H 0.057 0.943 48 H 0.050 0.950 49 H 0.032 0.968 50 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 2.898 -2.243 14.843 15.289 hybrid contribution -0.559 -0.385 -1.814 1.936 sum 2.340 -2.628 13.030 13.496 Atomic orbital electron populations 1.21750 0.91796 1.02771 1.03163 1.21254 0.97908 0.98099 0.95275 1.21523 1.01160 0.93291 1.02029 1.20587 0.76058 0.78739 0.90834 1.90616 1.59688 1.66373 1.29561 1.48402 1.53081 1.23709 1.08349 1.22466 0.95710 0.94730 0.89447 1.22853 0.96273 1.00881 0.95917 1.22833 0.99247 0.94704 0.98532 1.21854 1.00521 0.92623 0.84928 0.86588 1.21185 0.79697 0.88100 0.82425 1.90694 1.56211 1.20670 1.76526 1.45464 1.56113 1.17749 1.13990 1.21971 0.92169 0.92095 0.89221 0.88262 1.22077 0.96809 0.92396 0.88970 1.44496 1.20930 1.29825 1.38988 1.19325 0.96804 1.09654 1.10893 0.90569 1.25434 1.01081 0.97640 1.00623 1.70096 1.35843 1.17179 1.36179 0.85218 0.79711 0.76378 0.78839 1.21779 1.21997 1.19810 1.21647 0.87433 0.92648 0.94673 1.23193 0.94746 0.87106 0.92289 0.89928 1.86348 1.76792 1.33732 1.39709 0.90323 0.91926 0.92151 0.90256 0.93056 0.90989 0.92688 0.91959 0.89369 0.91892 0.86071 0.86329 0.88657 0.75414 0.94705 0.94181 0.94344 0.94970 0.96781 0.75485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.41 9.14 71.98 0.66 -2.75 16 2 C -0.10 -3.06 2.16 -11.54 -0.02 -3.09 16 3 C -0.12 -3.64 8.79 71.98 0.63 -3.01 16 4 C 0.55 17.43 5.98 87.66 0.52 17.96 16 5 O -0.58 -21.93 17.03 -3.03 -0.05 -21.98 16 6 N -0.60 -15.78 2.88 -792.16 -2.28 -18.06 16 7 C 0.10 2.00 6.89 86.85 0.60 2.60 16 8 C -0.12 -1.81 7.10 32.12 0.23 -1.58 16 9 C -0.12 -1.73 6.47 31.92 0.21 -1.52 16 10 C 0.11 2.41 2.93 44.60 0.13 2.54 16 11 H 0.12 2.33 8.14 -2.39 -0.02 2.31 16 12 C 0.50 14.20 5.52 87.66 0.48 14.68 16 13 O -0.56 -19.25 12.09 -3.02 -0.04 -19.29 16 14 N -0.68 -19.70 4.48 -435.97 -1.95 -21.65 16 15 C 0.15 4.87 3.31 46.38 0.15 5.02 16 16 H 0.10 3.14 7.54 -2.38 -0.02 3.12 16 17 C 0.12 4.75 6.93 86.85 0.60 5.36 16 18 N -0.61 -28.38 3.39 -692.02 -2.35 -30.73 16 19 C -0.24 -12.38 10.28 84.03 0.86 -11.51 16 20 H 0.08 3.90 7.83 -2.91 -0.02 3.87 16 21 C -0.05 -2.86 5.49 84.86 0.47 -2.39 16 22 N -0.94 -51.76 10.31 21.65 0.22 -51.53 16 23 Si 0.97 43.23 29.55 68.60 2.03 45.26 16 24 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16 25 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 26 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 27 C 0.16 6.81 5.14 86.73 0.45 7.26 16 28 C 0.09 2.72 4.12 31.78 0.13 2.85 16 29 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 30 O -0.56 -14.55 12.67 -148.98 -1.89 -16.44 16 31 H 0.08 1.76 8.14 -2.39 -0.02 1.75 16 32 H 0.06 1.42 8.14 -2.38 -0.02 1.41 16 33 H 0.06 1.53 8.13 -2.39 -0.02 1.51 16 34 H 0.08 2.45 4.83 -2.39 -0.01 2.44 16 35 H 0.05 1.71 6.78 -2.39 -0.02 1.70 16 36 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 37 H 0.05 1.62 8.02 -2.39 -0.02 1.60 16 38 H 0.06 1.47 8.08 -2.39 -0.02 1.45 16 39 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 40 H 0.06 1.15 8.14 -2.38 -0.02 1.14 16 41 H 0.12 1.05 8.14 -2.39 -0.02 1.03 16 42 H 0.12 1.16 8.14 -2.39 -0.02 1.14 16 43 H 0.09 1.50 7.44 -2.39 -0.02 1.49 16 44 H 0.41 11.51 8.22 -92.71 -0.76 10.75 16 45 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 46 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 47 H 0.25 13.33 8.31 -92.71 -0.77 12.55 16 48 H 0.03 1.51 7.31 -2.39 -0.02 1.49 16 49 H 0.01 0.68 7.48 -2.39 -0.02 0.66 16 50 H 0.40 7.63 9.11 -74.06 -0.67 6.96 16 Total: -1.00 -70.06 392.62 -0.69 -70.75 By element: Atomic # 1 Polarization: 31.74 SS G_CDS: -0.48 Total: 31.26 kcal Atomic # 6 Polarization: 26.31 SS G_CDS: 6.10 Total: 32.41 kcal Atomic # 7 Polarization: -115.61 SS G_CDS: -6.36 Total: -121.97 kcal Atomic # 8 Polarization: -55.74 SS G_CDS: -1.98 Total: -57.71 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.26 kcal Total: -70.06 -0.69 -70.75 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084070481.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.295 kcal (2) G-P(sol) polarization free energy of solvation -70.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds