Wall clock time and date at job start Tue Mar 31 2020 23:34:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.46720 * 2 1 4 4 H 1.08999 * 110.00031 * 315.61760 * 3 2 1 5 5 C 1.54327 * 109.88098 * 194.52520 * 3 2 1 6 6 H 1.08999 * 110.72123 * 336.93309 * 5 3 2 7 7 N 1.46500 * 110.72020 * 100.02552 * 5 3 2 8 8 C 1.34781 * 119.99846 * 205.00014 * 7 5 3 9 9 O 1.21273 * 120.00047 * 359.97438 * 8 7 5 10 10 C 1.50708 * 119.99726 * 180.02562 * 8 7 5 11 11 H 1.09002 * 109.67360 * 353.21028 * 10 8 7 12 12 C 1.53289 * 109.68106 * 113.72786 * 10 8 7 13 13 O 1.42979 * 109.21576 * 171.98490 * 12 10 8 14 14 C 1.42966 * 114.19552 * 297.47612 * 13 12 10 15 15 C 1.53296 * 109.22275 * 62.56697 * 14 13 12 16 16 N 1.47145 * 109.67994 * 232.69548 * 10 8 7 17 17 C 1.34780 * 120.98366 * 9.76003 * 16 10 8 18 18 C 1.50698 * 120.00138 * 179.59736 * 17 16 10 19 19 O 1.21282 * 120.00020 * 359.59953 * 17 16 10 20 20 C 1.55150 * 102.94287 * 218.39124 * 5 3 2 21 21 C 1.54689 * 101.68115 * 35.33513 * 20 5 3 22 22 N 1.47019 * 109.88155 * 76.71717 * 3 2 1 23 23 C 1.36935 * 125.65040 * 298.31492 * 22 3 2 24 24 H 1.07998 * 119.99581 * 52.54130 * 23 22 3 25 25 C 1.38804 * 120.00364 * 232.53897 * 23 22 3 26 26 N 1.31622 * 120.00242 * 180.38762 * 25 23 22 27 27 Si 1.86808 * 119.99885 * 0.38770 * 25 23 22 28 28 H 1.48502 * 109.46922 * 274.71919 * 27 25 23 29 29 H 1.48493 * 109.46982 * 34.72119 * 27 25 23 30 30 H 1.48498 * 109.46805 * 154.72256 * 27 25 23 31 31 H 1.09003 * 109.47402 * 167.74243 * 1 2 3 32 32 H 1.09003 * 109.46871 * 287.73696 * 1 2 3 33 33 H 1.08994 * 109.47575 * 47.73655 * 1 2 3 34 34 H 1.08998 * 109.46732 * 240.00431 * 2 1 3 35 35 H 1.08994 * 109.47594 * 120.00479 * 2 1 3 36 36 H 0.96999 * 119.99820 * 25.00053 * 7 5 3 37 37 H 1.09004 * 109.51669 * 291.94959 * 12 10 8 38 38 H 1.09007 * 109.51154 * 52.10000 * 12 10 8 39 39 H 1.08997 * 109.51661 * 302.63702 * 14 13 12 40 40 H 1.09004 * 109.54664 * 182.50791 * 14 13 12 41 41 H 1.08993 * 109.68226 * 187.96851 * 15 14 13 42 42 H 1.09003 * 109.71375 * 67.43175 * 15 14 13 43 43 H 1.09001 * 109.47059 * 354.47312 * 18 17 16 44 44 H 1.09003 * 109.47152 * 114.47572 * 18 17 16 45 45 H 1.09003 * 109.47595 * 234.47440 * 18 17 16 46 46 H 1.09008 * 111.00891 * 153.57695 * 20 5 3 47 47 H 1.09004 * 111.00718 * 277.38957 * 20 5 3 48 48 H 1.08994 * 110.39485 * 204.36704 * 21 20 5 49 49 H 1.09003 * 110.24032 * 82.10727 * 21 20 5 50 50 H 0.97001 * 120.00292 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.4740 2.0380 -0.7164 5 6 3.5394 1.4692 -0.3640 6 1 4.0057 0.5079 -0.1483 7 7 3.7246 1.8285 -1.7721 8 6 4.8365 1.4384 -2.4265 9 8 5.6837 0.7902 -1.8496 10 6 5.0273 1.8086 -3.8749 11 1 4.1218 2.2815 -4.2551 12 6 6.2098 2.7746 -4.0093 13 8 6.5005 2.9726 -5.3952 14 6 6.9043 1.7869 -6.0844 15 6 5.7566 0.7711 -6.0561 16 7 5.3226 0.6000 -4.6605 17 6 5.1990 -0.6276 -4.1180 18 6 5.4985 -1.8508 -4.9456 19 8 4.8466 -0.7478 -2.9638 20 6 4.1027 2.5775 0.5642 21 6 3.2482 2.3827 1.8388 22 7 1.9070 2.0198 1.3456 23 6 0.7317 2.1967 2.0257 24 1 0.0515 1.3676 2.1530 25 6 0.4146 3.4416 2.5514 26 7 -0.7115 3.6097 3.2117 27 14 1.5862 4.8784 2.3219 28 1 2.6156 4.8534 3.3919 29 1 2.2471 4.7713 0.9964 30 1 0.8270 6.1526 2.3950 31 1 -0.3634 -1.0042 -0.2182 32 1 -0.3633 0.3131 0.9789 33 1 -0.3634 0.6911 -0.7605 34 1 1.8932 -0.5138 -0.8900 35 1 1.8934 -0.5139 0.8899 36 1 3.0472 2.3473 -2.2334 37 1 5.9539 3.7296 -3.5503 38 1 7.0830 2.3528 -3.5113 39 1 7.7797 1.3610 -5.5942 40 1 7.1487 2.0313 -7.1182 41 1 6.1015 -0.1836 -6.4530 42 1 4.9248 1.1393 -6.6566 43 1 5.7020 -1.5527 -5.9742 44 1 6.3699 -2.3620 -4.5363 45 1 4.6404 -2.5226 -4.9251 46 1 5.1601 2.4133 0.7717 47 1 3.9398 3.5663 0.1354 48 1 3.2039 3.3090 2.4116 49 1 3.6586 1.5778 2.4486 50 1 -0.9330 4.4796 3.5794 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087834700.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:34:47 Heat of formation + Delta-G solvation = -60.728980 kcal Electronic energy + Delta-G solvation = -31967.949232 eV Core-core repulsion = 27804.239135 eV Total energy + Delta-G solvation = -4163.710097 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.18588 -39.13544 -38.51364 -37.58658 -35.10046 -33.95084 -32.54830 -32.48056 -31.90417 -30.12127 -29.29527 -27.93737 -26.99772 -25.19544 -24.01277 -22.63173 -21.95988 -21.33444 -20.18731 -19.85168 -19.00601 -17.77375 -17.14244 -16.91112 -16.82350 -16.36415 -16.00355 -15.73139 -15.39887 -15.04250 -14.69939 -14.36816 -14.20923 -13.96266 -13.87731 -13.61137 -13.43590 -12.73722 -12.65383 -12.54283 -12.40058 -12.36484 -12.18101 -12.14628 -11.87134 -11.70767 -11.39221 -11.36010 -11.20524 -10.87174 -10.71821 -10.65632 -10.33141 -10.20560 -9.95801 -9.76380 -9.63271 -9.48072 -9.38280 -8.97304 -8.54254 -8.43919 -6.50293 -5.93986 -3.63979 2.26191 2.46801 3.09964 3.13755 3.32789 3.43135 3.48919 3.51194 4.21225 4.30931 4.42012 4.50919 4.58019 4.62520 4.73313 4.79266 4.94203 5.02786 5.13707 5.14089 5.19000 5.20113 5.28732 5.36851 5.41933 5.50738 5.54048 5.72892 5.91880 5.95547 6.02292 6.07445 6.19675 6.32602 6.44796 6.54253 6.58251 6.62858 6.66930 6.75911 6.86400 6.93656 7.02276 7.16731 7.20087 7.77156 7.98493 8.12266 8.47324 8.56880 8.88488 9.65201 10.32869 11.15105 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.017216 B = 0.003390 C = 0.003046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1625.998080 B = 8256.521215 C = 9188.762681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.122 4.122 3 C 0.157 3.843 4 H 0.042 0.958 5 C 0.143 3.857 6 H 0.098 0.902 7 N -0.713 5.713 8 C 0.531 3.469 9 O -0.513 6.513 10 C 0.092 3.908 11 H 0.095 0.905 12 C 0.063 3.937 13 O -0.373 6.373 14 C 0.043 3.957 15 C 0.072 3.928 16 N -0.612 5.612 17 C 0.501 3.499 18 C -0.173 4.173 19 O -0.493 6.493 20 C -0.147 4.147 21 C 0.116 3.884 22 N -0.601 5.601 23 C -0.251 4.251 24 H 0.086 0.914 25 C 0.042 3.958 26 N -0.906 5.906 27 Si 0.899 3.101 28 H -0.285 1.285 29 H -0.267 1.267 30 H -0.304 1.304 31 H 0.031 0.969 32 H 0.079 0.921 33 H 0.043 0.957 34 H 0.045 0.955 35 H 0.059 0.941 36 H 0.395 0.605 37 H 0.112 0.888 38 H 0.069 0.931 39 H 0.059 0.941 40 H 0.109 0.891 41 H 0.104 0.896 42 H 0.080 0.920 43 H 0.078 0.922 44 H 0.094 0.906 45 H 0.095 0.905 46 H 0.067 0.933 47 H 0.067 0.933 48 H 0.043 0.957 49 H 0.031 0.969 50 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.506 -5.094 -22.889 27.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.161 4.161 3 C 0.051 3.949 4 H 0.060 0.940 5 C 0.038 3.962 6 H 0.116 0.884 7 N -0.364 5.364 8 C 0.315 3.685 9 O -0.387 6.387 10 C -0.015 4.015 11 H 0.113 0.887 12 C -0.015 4.015 13 O -0.291 6.291 14 C -0.034 4.034 15 C -0.051 4.051 16 N -0.351 5.351 17 C 0.289 3.711 18 C -0.232 4.232 19 O -0.365 6.365 20 C -0.186 4.186 21 C -0.009 4.009 22 N -0.328 5.328 23 C -0.379 4.379 24 H 0.103 0.897 25 C -0.160 4.160 26 N -0.546 5.546 27 Si 0.730 3.270 28 H -0.212 1.212 29 H -0.192 1.192 30 H -0.232 1.232 31 H 0.050 0.950 32 H 0.098 0.902 33 H 0.063 0.937 34 H 0.064 0.936 35 H 0.078 0.922 36 H 0.229 0.771 37 H 0.130 0.870 38 H 0.087 0.913 39 H 0.077 0.923 40 H 0.127 0.873 41 H 0.122 0.878 42 H 0.098 0.902 43 H 0.097 0.903 44 H 0.113 0.887 45 H 0.114 0.886 46 H 0.085 0.915 47 H 0.085 0.915 48 H 0.061 0.939 49 H 0.049 0.951 50 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 14.714 -5.373 -21.750 26.804 hybrid contribution 0.206 0.919 -0.269 0.979 sum 14.920 -4.454 -22.019 26.969 Atomic orbital electron populations 1.21870 0.95771 0.98986 1.03792 1.21875 0.96495 0.97485 1.00291 1.21276 0.90945 0.93426 0.89275 0.93989 1.22016 0.97130 0.98566 0.78518 0.88384 1.45866 1.21333 1.56472 1.12752 1.19473 0.82878 0.79259 0.86882 1.90694 1.43099 1.36460 1.68476 1.21849 1.00477 0.87318 0.91850 0.88718 1.22854 0.96054 0.99559 0.83048 1.88003 1.87623 1.31685 1.21772 1.23041 0.95726 0.86140 0.98521 1.22593 0.98629 1.01458 0.82430 1.48033 1.69757 1.04842 1.12499 1.20890 0.77912 0.84244 0.88035 1.21986 1.04994 0.96049 1.00161 1.90945 1.44200 1.84951 1.16406 1.23162 0.99196 0.98810 0.97457 1.21885 0.87000 0.98043 0.93935 1.44463 1.01559 1.74450 1.12335 1.18575 0.94777 0.94427 1.30161 0.89719 1.25818 0.95160 0.97593 0.97417 1.69761 1.22883 1.24190 1.37806 0.86586 0.80101 0.81349 0.78949 1.21210 1.19161 1.23240 0.94960 0.90200 0.93743 0.93611 0.92246 0.77096 0.86995 0.91265 0.92271 0.87308 0.87825 0.90153 0.90292 0.88708 0.88644 0.91465 0.91462 0.93924 0.95098 0.92574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.87 9.48 37.16 0.35 -2.51 16 2 C -0.12 -2.40 5.38 -26.73 -0.14 -2.54 16 3 C 0.16 3.23 2.94 -66.95 -0.20 3.03 16 4 H 0.04 0.88 7.48 -51.93 -0.39 0.49 16 5 C 0.14 2.65 2.81 -66.10 -0.19 2.46 16 6 H 0.10 2.02 7.25 -51.93 -0.38 1.64 16 7 N -0.71 -11.11 5.18 -52.03 -0.27 -11.37 16 8 C 0.53 8.20 4.81 -10.98 -0.05 8.15 16 9 O -0.51 -9.87 13.72 -19.82 -0.27 -10.15 16 10 C 0.09 1.05 3.49 -68.58 -0.24 0.81 16 11 H 0.09 0.92 7.94 -51.93 -0.41 0.50 16 12 C 0.06 0.63 6.27 37.31 0.23 0.86 16 13 O -0.37 -3.40 10.74 -35.23 -0.38 -3.78 16 14 C 0.04 0.26 6.99 37.31 0.26 0.52 16 15 C 0.07 0.41 6.50 -3.53 -0.02 0.39 16 16 N -0.61 -6.21 3.02 -166.06 -0.50 -6.71 16 17 C 0.50 6.15 7.53 -10.98 -0.08 6.06 16 18 C -0.17 -1.26 10.07 36.00 0.36 -0.89 16 19 O -0.49 -8.66 12.50 -19.83 -0.25 -8.91 16 20 C -0.15 -2.79 6.76 -24.70 -0.17 -2.96 16 21 C 0.12 2.57 6.14 -2.64 -0.02 2.55 16 22 N -0.60 -14.42 2.49 -162.71 -0.41 -14.82 16 23 C -0.25 -6.95 9.51 -15.06 -0.14 -7.09 16 24 H 0.09 2.50 5.62 -52.49 -0.29 2.21 16 25 C 0.04 1.20 5.50 -17.43 -0.10 1.11 16 26 N -0.91 -27.46 13.97 55.49 0.78 -26.69 16 27 Si 0.90 22.58 24.93 -169.99 -4.24 18.34 16 28 H -0.28 -7.07 6.81 56.52 0.39 -6.68 16 29 H -0.27 -6.43 6.44 56.52 0.36 -6.07 16 30 H -0.30 -7.73 7.11 56.52 0.40 -7.33 16 31 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.08 1.79 5.24 -51.93 -0.27 1.51 16 33 H 0.04 0.84 7.92 -51.93 -0.41 0.43 16 34 H 0.05 0.85 8.07 -51.93 -0.42 0.43 16 35 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 36 H 0.40 5.28 8.22 -40.82 -0.34 4.94 16 37 H 0.11 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.07 0.78 8.06 -51.92 -0.42 0.36 16 39 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.11 0.37 8.14 -51.93 -0.42 -0.06 16 41 H 0.10 0.32 5.25 -51.93 -0.27 0.05 16 42 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.08 0.31 5.24 -51.93 -0.27 0.04 16 44 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 46 H 0.07 1.20 8.14 -51.92 -0.42 0.78 16 47 H 0.07 1.27 7.57 -51.93 -0.39 0.88 16 48 H 0.04 1.00 3.83 -51.93 -0.20 0.80 16 49 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 50 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 378.51 15.07 5.70 5.70 Total: -1.00 -36.23 378.51 -7.85 -44.08 By element: Atomic # 1 Polarization: 12.25 SS G_CDS: -7.88 Total: 4.37 kcal Atomic # 6 Polarization: 10.08 SS G_CDS: -0.14 Total: 9.94 kcal Atomic # 7 Polarization: -59.20 SS G_CDS: -0.40 Total: -59.60 kcal Atomic # 8 Polarization: -21.94 SS G_CDS: -0.90 Total: -22.83 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -4.24 Total: 18.34 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -36.23 -7.85 -44.08 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087834700.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.646 kcal (2) G-P(sol) polarization free energy of solvation -36.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds