Wall clock time and date at job start Tue Mar 31 2020 23:34:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.46720 * 2 1 4 4 H 1.08999 * 110.00031 * 315.61760 * 3 2 1 5 5 C 1.54327 * 109.88098 * 194.52520 * 3 2 1 6 6 H 1.08999 * 110.72123 * 336.93309 * 5 3 2 7 7 N 1.46500 * 110.72020 * 100.02552 * 5 3 2 8 8 C 1.34781 * 119.99846 * 205.00014 * 7 5 3 9 9 O 1.21273 * 120.00047 * 359.97438 * 8 7 5 10 10 C 1.50708 * 119.99726 * 180.02562 * 8 7 5 11 11 H 1.09002 * 109.67360 * 353.21028 * 10 8 7 12 12 C 1.53289 * 109.68106 * 113.72786 * 10 8 7 13 13 O 1.42979 * 109.21576 * 171.98490 * 12 10 8 14 14 C 1.42966 * 114.19552 * 297.47612 * 13 12 10 15 15 C 1.53296 * 109.22275 * 62.56697 * 14 13 12 16 16 N 1.47145 * 109.67994 * 232.69548 * 10 8 7 17 17 C 1.34780 * 120.98366 * 9.76003 * 16 10 8 18 18 C 1.50698 * 120.00138 * 179.59736 * 17 16 10 19 19 O 1.21282 * 120.00020 * 359.59953 * 17 16 10 20 20 C 1.55150 * 102.94287 * 218.39124 * 5 3 2 21 21 C 1.54689 * 101.68115 * 35.33513 * 20 5 3 22 22 N 1.47019 * 109.88155 * 76.71717 * 3 2 1 23 23 C 1.36935 * 125.65040 * 298.31492 * 22 3 2 24 24 H 1.07998 * 119.99581 * 52.54130 * 23 22 3 25 25 C 1.38804 * 120.00364 * 232.53897 * 23 22 3 26 26 N 1.31622 * 120.00242 * 180.38762 * 25 23 22 27 27 Si 1.86808 * 119.99885 * 0.38770 * 25 23 22 28 28 H 1.48502 * 109.46922 * 274.71919 * 27 25 23 29 29 H 1.48493 * 109.46982 * 34.72119 * 27 25 23 30 30 H 1.48498 * 109.46805 * 154.72256 * 27 25 23 31 31 H 1.09003 * 109.47402 * 167.74243 * 1 2 3 32 32 H 1.09003 * 109.46871 * 287.73696 * 1 2 3 33 33 H 1.08994 * 109.47575 * 47.73655 * 1 2 3 34 34 H 1.08998 * 109.46732 * 240.00431 * 2 1 3 35 35 H 1.08994 * 109.47594 * 120.00479 * 2 1 3 36 36 H 0.96999 * 119.99820 * 25.00053 * 7 5 3 37 37 H 1.09004 * 109.51669 * 291.94959 * 12 10 8 38 38 H 1.09007 * 109.51154 * 52.10000 * 12 10 8 39 39 H 1.08997 * 109.51661 * 302.63702 * 14 13 12 40 40 H 1.09004 * 109.54664 * 182.50791 * 14 13 12 41 41 H 1.08993 * 109.68226 * 187.96851 * 15 14 13 42 42 H 1.09003 * 109.71375 * 67.43175 * 15 14 13 43 43 H 1.09001 * 109.47059 * 354.47312 * 18 17 16 44 44 H 1.09003 * 109.47152 * 114.47572 * 18 17 16 45 45 H 1.09003 * 109.47595 * 234.47440 * 18 17 16 46 46 H 1.09008 * 111.00891 * 153.57695 * 20 5 3 47 47 H 1.09004 * 111.00718 * 277.38957 * 20 5 3 48 48 H 1.08994 * 110.39485 * 204.36704 * 21 20 5 49 49 H 1.09003 * 110.24032 * 82.10727 * 21 20 5 50 50 H 0.97001 * 120.00292 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.4740 2.0380 -0.7164 5 6 3.5394 1.4692 -0.3640 6 1 4.0057 0.5079 -0.1483 7 7 3.7246 1.8285 -1.7721 8 6 4.8365 1.4384 -2.4265 9 8 5.6837 0.7902 -1.8496 10 6 5.0273 1.8086 -3.8749 11 1 4.1218 2.2815 -4.2551 12 6 6.2098 2.7746 -4.0093 13 8 6.5005 2.9726 -5.3952 14 6 6.9043 1.7869 -6.0844 15 6 5.7566 0.7711 -6.0561 16 7 5.3226 0.6000 -4.6605 17 6 5.1990 -0.6276 -4.1180 18 6 5.4985 -1.8508 -4.9456 19 8 4.8466 -0.7478 -2.9638 20 6 4.1027 2.5775 0.5642 21 6 3.2482 2.3827 1.8388 22 7 1.9070 2.0198 1.3456 23 6 0.7317 2.1967 2.0257 24 1 0.0515 1.3676 2.1530 25 6 0.4146 3.4416 2.5514 26 7 -0.7115 3.6097 3.2117 27 14 1.5862 4.8784 2.3219 28 1 2.6156 4.8534 3.3919 29 1 2.2471 4.7713 0.9964 30 1 0.8270 6.1526 2.3950 31 1 -0.3634 -1.0042 -0.2182 32 1 -0.3633 0.3131 0.9789 33 1 -0.3634 0.6911 -0.7605 34 1 1.8932 -0.5138 -0.8900 35 1 1.8934 -0.5139 0.8899 36 1 3.0472 2.3473 -2.2334 37 1 5.9539 3.7296 -3.5503 38 1 7.0830 2.3528 -3.5113 39 1 7.7797 1.3610 -5.5942 40 1 7.1487 2.0313 -7.1182 41 1 6.1015 -0.1836 -6.4530 42 1 4.9248 1.1393 -6.6566 43 1 5.7020 -1.5527 -5.9742 44 1 6.3699 -2.3620 -4.5363 45 1 4.6404 -2.5226 -4.9251 46 1 5.1601 2.4133 0.7717 47 1 3.9398 3.5663 0.1354 48 1 3.2039 3.3090 2.4116 49 1 3.6586 1.5778 2.4486 50 1 -0.9330 4.4796 3.5794 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087834700.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:34:46 Heat of formation + Delta-G solvation = -87.624740 kcal Electronic energy + Delta-G solvation = -31969.115520 eV Core-core repulsion = 27804.239135 eV Total energy + Delta-G solvation = -4164.876385 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.10476 -40.48788 -39.31360 -39.02007 -35.89558 -35.51927 -34.28010 -33.98648 -33.11371 -31.04970 -30.73930 -28.86101 -28.40067 -26.46993 -25.41317 -23.72281 -23.29931 -22.61538 -21.64193 -21.37045 -20.06448 -18.91876 -18.73159 -18.11081 -17.91910 -17.56457 -16.86232 -16.59081 -16.47408 -16.06094 -15.93297 -15.75755 -15.66172 -15.39770 -14.72889 -14.66549 -14.49073 -14.40056 -14.27777 -14.10310 -13.82555 -13.48040 -13.21789 -13.17927 -13.08445 -13.01340 -12.89330 -12.70297 -12.45739 -12.35838 -12.15658 -11.96555 -11.85328 -11.68614 -11.52251 -11.41580 -11.35452 -10.81027 -10.65464 -10.44317 -9.96013 -9.62427 -8.53096 -8.09871 -5.83504 1.32461 1.37795 1.39095 1.50984 1.60900 2.03746 2.14145 2.41534 2.79687 3.08877 3.27769 3.50254 3.62373 3.71420 3.80580 3.84317 3.86971 4.00509 4.05890 4.11627 4.22336 4.25582 4.36334 4.38873 4.46066 4.55579 4.56542 4.58439 4.61923 4.69844 4.76723 4.79442 4.88611 4.90824 4.99730 5.06006 5.07290 5.16180 5.19480 5.26296 5.36313 5.49204 5.62729 5.97620 5.99690 6.27701 6.36027 6.58321 6.84644 7.12134 7.42126 7.49223 8.24308 8.98654 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.017216 B = 0.003390 C = 0.003046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1625.998080 B = 8256.521215 C = 9188.762681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.114 4.114 3 C 0.158 3.842 4 H 0.045 0.955 5 C 0.159 3.841 6 H 0.077 0.923 7 N -0.709 5.709 8 C 0.531 3.469 9 O -0.552 6.552 10 C 0.094 3.906 11 H 0.116 0.884 12 C 0.071 3.929 13 O -0.381 6.381 14 C 0.036 3.964 15 C 0.068 3.932 16 N -0.612 5.612 17 C 0.487 3.513 18 C -0.164 4.164 19 O -0.556 6.556 20 C -0.134 4.134 21 C 0.109 3.891 22 N -0.614 5.614 23 C -0.241 4.241 24 H 0.056 0.944 25 C -0.012 4.012 26 N -0.951 5.951 27 Si 0.956 3.044 28 H -0.280 1.280 29 H -0.248 1.248 30 H -0.308 1.308 31 H 0.055 0.945 32 H 0.045 0.955 33 H 0.048 0.952 34 H 0.059 0.941 35 H 0.042 0.958 36 H 0.408 0.592 37 H 0.122 0.878 38 H 0.051 0.949 39 H 0.055 0.945 40 H 0.142 0.858 41 H 0.134 0.866 42 H 0.098 0.902 43 H 0.117 0.883 44 H 0.097 0.903 45 H 0.098 0.902 46 H 0.081 0.919 47 H 0.075 0.925 48 H 0.033 0.967 49 H 0.031 0.969 50 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.388 -4.703 -26.786 31.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.154 4.154 3 C 0.052 3.948 4 H 0.063 0.937 5 C 0.053 3.947 6 H 0.095 0.905 7 N -0.362 5.362 8 C 0.318 3.682 9 O -0.429 6.429 10 C -0.014 4.014 11 H 0.134 0.866 12 C -0.007 4.007 13 O -0.299 6.299 14 C -0.041 4.041 15 C -0.052 4.052 16 N -0.349 5.349 17 C 0.278 3.722 18 C -0.223 4.223 19 O -0.434 6.434 20 C -0.174 4.174 21 C -0.015 4.015 22 N -0.342 5.342 23 C -0.370 4.370 24 H 0.073 0.927 25 C -0.209 4.209 26 N -0.594 5.594 27 Si 0.785 3.215 28 H -0.208 1.208 29 H -0.172 1.172 30 H -0.236 1.236 31 H 0.074 0.926 32 H 0.064 0.936 33 H 0.067 0.933 34 H 0.078 0.922 35 H 0.061 0.939 36 H 0.244 0.756 37 H 0.140 0.860 38 H 0.069 0.931 39 H 0.073 0.927 40 H 0.159 0.841 41 H 0.152 0.848 42 H 0.116 0.884 43 H 0.135 0.865 44 H 0.115 0.885 45 H 0.116 0.884 46 H 0.099 0.901 47 H 0.093 0.907 48 H 0.051 0.949 49 H 0.049 0.951 50 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 16.627 -4.977 -25.742 31.046 hybrid contribution -0.349 0.656 0.874 1.147 sum 16.277 -4.321 -24.868 30.034 Atomic orbital electron populations 1.21762 0.95597 1.00448 1.01859 1.21774 0.96503 0.97001 1.00090 1.21334 0.92555 0.93423 0.87497 0.93699 1.21563 0.95093 0.97558 0.80466 0.90498 1.45741 1.22145 1.56740 1.11525 1.20117 0.81797 0.77969 0.88364 1.90670 1.44464 1.38039 1.69748 1.21846 1.02072 0.88317 0.89130 0.86634 1.22726 0.94678 0.99441 0.83881 1.88003 1.87611 1.33310 1.20965 1.23336 0.95581 0.85316 0.99822 1.22944 0.99163 1.03141 0.79969 1.48253 1.68794 1.03879 1.14004 1.21810 0.76742 0.85907 0.87742 1.22002 1.05113 0.93794 1.01361 1.90911 1.47296 1.85907 1.19259 1.23070 0.99320 0.99224 0.95744 1.21967 0.86548 0.97487 0.95477 1.44530 1.01265 1.74625 1.13740 1.18462 0.95339 0.93615 1.29630 0.92696 1.26461 0.96681 1.00185 0.97608 1.69890 1.25031 1.24781 1.39718 0.85661 0.78173 0.77896 0.79772 1.20759 1.17218 1.23649 0.92584 0.93618 0.93251 0.92219 0.93880 0.75629 0.86028 0.93109 0.92702 0.84059 0.84809 0.88422 0.86468 0.88489 0.88382 0.90081 0.90686 0.94869 0.95129 0.92663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.47 9.48 71.98 0.68 -4.78 16 2 C -0.11 -4.51 5.38 30.59 0.16 -4.34 16 3 C 0.16 6.42 2.94 45.34 0.13 6.56 16 4 H 0.05 1.82 7.48 -2.39 -0.02 1.81 16 5 C 0.16 5.81 2.81 46.18 0.13 5.94 16 6 H 0.08 3.19 7.25 -2.39 -0.02 3.18 16 7 N -0.71 -21.15 5.18 -436.92 -2.26 -23.41 16 8 C 0.53 15.88 4.81 87.66 0.42 16.30 16 9 O -0.55 -21.31 13.72 21.26 0.29 -21.01 16 10 C 0.09 1.92 3.49 44.22 0.15 2.08 16 11 H 0.12 1.88 7.94 -2.39 -0.02 1.86 16 12 C 0.07 1.28 6.27 72.08 0.45 1.73 16 13 O -0.38 -5.75 10.74 -148.98 -1.60 -7.35 16 14 C 0.04 0.30 6.99 72.08 0.50 0.80 16 15 C 0.07 0.49 6.50 86.35 0.56 1.05 16 16 N -0.61 -10.80 3.02 -797.69 -2.41 -13.21 16 17 C 0.49 11.17 7.53 87.66 0.66 11.83 16 18 C -0.16 -1.93 10.07 71.24 0.72 -1.21 16 19 O -0.56 -19.53 12.50 21.23 0.27 -19.26 16 20 C -0.13 -4.92 6.76 31.91 0.22 -4.70 16 21 C 0.11 4.79 6.14 86.78 0.53 5.33 16 22 N -0.61 -29.62 2.49 -668.68 -1.67 -31.29 16 23 C -0.24 -13.70 9.51 84.03 0.80 -12.90 16 24 H 0.06 3.43 5.62 -2.91 -0.02 3.41 16 25 C -0.01 -0.70 5.50 84.86 0.47 -0.23 16 26 N -0.95 -59.37 13.97 21.65 0.30 -59.06 16 27 Si 0.96 46.68 24.93 68.60 1.71 48.39 16 28 H -0.28 -13.40 6.81 99.48 0.68 -12.72 16 29 H -0.25 -11.24 6.44 99.48 0.64 -10.59 16 30 H -0.31 -15.13 7.11 99.48 0.71 -14.42 16 31 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 32 H 0.04 2.11 5.24 -2.39 -0.01 2.10 16 33 H 0.05 1.85 7.92 -2.39 -0.02 1.83 16 34 H 0.06 2.19 8.07 -2.39 -0.02 2.18 16 35 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 36 H 0.41 10.05 8.22 -92.71 -0.76 9.29 16 37 H 0.12 1.88 8.14 -2.39 -0.02 1.87 16 38 H 0.05 1.10 8.06 -2.38 -0.02 1.08 16 39 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 40 H 0.14 0.27 8.14 -2.39 -0.02 0.25 16 41 H 0.13 0.12 5.25 -2.39 -0.01 0.11 16 42 H 0.10 0.46 8.14 -2.39 -0.02 0.44 16 43 H 0.12 0.38 5.24 -2.39 -0.01 0.36 16 44 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 45 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 46 H 0.08 2.77 8.14 -2.38 -0.02 2.75 16 47 H 0.07 2.65 7.57 -2.38 -0.02 2.63 16 48 H 0.03 1.53 3.83 -2.39 -0.01 1.52 16 49 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 50 H 0.26 15.65 8.31 -92.71 -0.77 14.88 16 Total: -1.00 -82.60 378.51 1.33 -81.27 By element: Atomic # 1 Polarization: 21.39 SS G_CDS: 0.11 Total: 21.49 kcal Atomic # 6 Polarization: 16.85 SS G_CDS: 6.59 Total: 23.44 kcal Atomic # 7 Polarization: -120.93 SS G_CDS: -6.04 Total: -126.97 kcal Atomic # 8 Polarization: -46.59 SS G_CDS: -1.04 Total: -47.63 kcal Atomic # 14 Polarization: 46.68 SS G_CDS: 1.71 Total: 48.39 kcal Total: -82.60 1.33 -81.27 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087834700.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.355 kcal (2) G-P(sol) polarization free energy of solvation -82.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds