Wall clock time and date at job start Tue Mar 31 2020 23:34:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.47361 * 2 1 4 4 H 1.09003 * 109.86798 * 56.36510 * 3 2 1 5 5 C 1.54317 * 109.88160 * 295.18883 * 3 2 1 6 6 H 1.08998 * 110.72233 * 336.74897 * 5 3 2 7 7 N 1.46497 * 110.72051 * 100.02566 * 5 3 2 8 8 C 1.34785 * 120.00073 * 204.99800 * 7 5 3 9 9 O 1.21276 * 119.99667 * 0.02562 * 8 7 5 10 10 C 1.50694 * 120.00152 * 179.97438 * 8 7 5 11 11 H 1.09006 * 109.68020 * 9.91374 * 10 8 7 12 12 C 1.53297 * 109.68234 * 249.39632 * 10 8 7 13 13 O 1.42981 * 109.21516 * 188.01506 * 12 10 8 14 14 C 1.42964 * 114.19971 * 62.52137 * 13 12 10 15 15 C 1.53288 * 109.22051 * 297.43379 * 14 13 12 16 16 N 1.47152 * 108.38833 * 52.30891 * 15 14 13 17 17 C 1.34775 * 120.98607 * 129.48297 * 16 15 14 18 18 C 1.50700 * 119.99749 * 5.96928 * 17 16 15 19 19 O 1.21285 * 120.00014 * 185.97300 * 17 16 15 20 20 C 1.55161 * 102.94102 * 218.38720 * 5 3 2 21 21 C 1.54905 * 101.57883 * 35.50176 * 20 5 3 22 22 N 1.47021 * 109.88041 * 177.37678 * 3 2 1 23 23 C 1.36932 * 125.65168 * 298.31853 * 22 3 2 24 24 H 1.08006 * 119.99855 * 2.60221 * 23 22 3 25 25 C 1.38809 * 120.00150 * 182.59913 * 23 22 3 26 26 N 1.31620 * 120.00230 * 359.97438 * 25 23 22 27 27 Si 1.86803 * 120.00194 * 180.02562 * 25 23 22 28 28 H 1.48500 * 109.47025 * 89.99939 * 27 25 23 29 29 H 1.48497 * 109.47218 * 209.99655 * 27 25 23 30 30 H 1.48499 * 109.46825 * 330.00100 * 27 25 23 31 31 H 1.09002 * 109.47042 * 55.21883 * 1 2 3 32 32 H 1.08999 * 109.47299 * 175.21956 * 1 2 3 33 33 H 1.09003 * 109.46897 * 295.21890 * 1 2 3 34 34 H 1.09005 * 109.47109 * 120.00306 * 2 1 3 35 35 H 1.09000 * 109.46956 * 239.99890 * 2 1 3 36 36 H 0.97002 * 120.00251 * 24.99675 * 7 5 3 37 37 H 1.08996 * 109.51168 * 307.89918 * 12 10 8 38 38 H 1.09001 * 109.51353 * 68.05236 * 12 10 8 39 39 H 1.09001 * 109.50627 * 177.51146 * 14 13 12 40 40 H 1.09002 * 109.50954 * 57.36196 * 14 13 12 41 41 H 1.08995 * 109.68686 * 292.57950 * 15 14 13 42 42 H 1.09006 * 109.71202 * 172.04636 * 15 14 13 43 43 H 1.08992 * 109.47221 * 5.93124 * 18 17 16 44 44 H 1.09001 * 109.46967 * 125.93653 * 18 17 16 45 45 H 1.09008 * 109.47242 * 245.92785 * 18 17 16 46 46 H 1.09000 * 111.00178 * 277.43026 * 20 5 3 47 47 H 1.08998 * 111.03530 * 153.59135 * 20 5 3 48 48 H 1.08998 * 110.36829 * 204.14775 * 21 20 5 49 49 H 1.09001 * 110.36998 * 81.83094 * 21 20 5 50 50 H 0.96991 * 120.00417 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6282 1.9811 0.8535 5 6 1.6327 2.1432 -1.3132 6 1 1.4528 1.4116 -2.1009 7 7 0.4521 2.9856 -1.1066 8 6 -0.3589 3.2752 -2.1435 9 8 -0.1115 2.8381 -3.2473 10 6 -1.5737 4.1412 -1.9308 11 1 -1.5413 4.5806 -0.9338 12 6 -2.8434 3.2956 -2.0814 13 8 -3.9859 4.1550 -2.0644 14 6 -4.0298 5.0930 -3.1424 15 6 -2.8209 6.0305 -3.0451 16 7 -1.6040 5.2095 -2.9424 17 6 -0.5482 5.4298 -3.7507 18 6 -0.5483 6.6122 -4.6850 19 8 0.4020 4.6763 -3.7261 20 6 2.8755 3.0114 -1.6438 21 6 4.0296 2.1015 -1.1542 22 7 3.5089 1.4534 0.0633 23 6 4.2676 0.9466 1.0843 24 1 3.7904 0.4523 1.9177 25 6 5.6499 1.0678 1.0483 26 7 6.2315 1.6696 0.0324 27 14 6.6849 0.3757 2.4409 28 1 7.0489 -1.0311 2.1351 29 1 7.9207 1.1857 2.5889 30 1 5.9078 0.4224 3.7055 31 1 -0.3633 0.5862 -0.8441 32 1 -0.3634 -1.0241 -0.0856 33 1 -0.3633 0.4379 0.9298 34 1 1.8934 -0.5139 0.8900 35 1 1.8933 -0.5139 -0.8900 36 1 0.2540 3.3349 -0.2236 37 1 -2.8100 2.7538 -3.0266 38 1 -2.9083 2.5862 -1.2563 39 1 -4.9486 5.6761 -3.0803 40 1 -4.0004 4.5582 -4.0917 41 1 -2.9147 6.6600 -2.1603 42 1 -2.7677 6.6557 -3.9364 43 1 -1.4276 7.2269 -4.4930 44 1 0.3520 7.2045 -4.5215 45 1 -0.5691 6.2602 -5.7165 46 1 2.8554 3.9495 -1.0891 47 1 2.9505 3.1951 -2.7156 48 1 4.9102 2.6992 -0.9188 49 1 4.2691 1.3529 -1.9095 50 1 7.1973 1.7547 0.0074 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087834701.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:34:51 Heat of formation + Delta-G solvation = -52.410981 kcal Electronic energy + Delta-G solvation = -31957.869781 eV Core-core repulsion = 27794.520379 eV Total energy + Delta-G solvation = -4163.349402 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.09949 -39.02079 -38.42044 -37.34942 -35.00696 -33.86258 -32.74901 -32.33368 -31.44192 -30.03735 -28.93990 -27.83647 -26.48975 -25.10285 -24.13962 -22.64127 -22.14167 -20.85544 -20.04523 -19.82787 -18.87404 -17.72397 -17.04045 -16.86339 -16.65739 -16.15703 -15.72484 -15.45072 -15.28852 -14.83957 -14.69018 -14.39749 -13.89994 -13.78814 -13.78359 -13.59443 -13.34146 -13.04528 -12.67326 -12.56107 -12.31154 -12.14919 -11.91295 -11.78941 -11.75833 -11.51646 -11.31744 -11.11371 -10.84663 -10.80358 -10.59723 -10.55764 -10.40516 -10.19623 -10.05220 -9.67507 -9.56675 -9.40529 -9.06709 -8.85444 -8.61787 -8.24600 -6.81137 -5.58590 -3.03817 2.34498 2.56443 3.18501 3.25560 3.42044 3.46549 3.48824 3.59124 4.30141 4.38426 4.50732 4.53303 4.63340 4.70021 4.79958 4.91383 5.00971 5.08094 5.21855 5.25178 5.33370 5.38947 5.41465 5.46797 5.58773 5.61746 5.68188 5.80033 5.92051 5.94908 6.07489 6.11853 6.33856 6.43095 6.49148 6.54530 6.62671 6.71375 6.81189 6.90226 6.99467 7.12665 7.25440 7.59549 7.68874 7.88667 7.93322 8.11908 8.43438 8.69742 9.25993 9.87054 10.51419 11.42282 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.019674 B = 0.003050 C = 0.002769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1422.885730 B = 9178.376005 C =10108.227973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.132 4.132 3 C 0.160 3.840 4 H 0.034 0.966 5 C 0.146 3.854 6 H 0.090 0.910 7 N -0.713 5.713 8 C 0.521 3.479 9 O -0.498 6.498 10 C 0.094 3.906 11 H 0.094 0.906 12 C 0.063 3.937 13 O -0.374 6.374 14 C 0.044 3.956 15 C 0.074 3.926 16 N -0.614 5.614 17 C 0.495 3.505 18 C -0.173 4.173 19 O -0.482 6.482 20 C -0.146 4.146 21 C 0.147 3.853 22 N -0.595 5.595 23 C -0.219 4.219 24 H 0.077 0.923 25 C -0.011 4.011 26 N -0.920 5.920 27 Si 0.913 3.087 28 H -0.290 1.290 29 H -0.291 1.291 30 H -0.282 1.282 31 H 0.050 0.950 32 H 0.044 0.956 33 H 0.046 0.954 34 H 0.062 0.938 35 H 0.056 0.944 36 H 0.393 0.607 37 H 0.068 0.932 38 H 0.112 0.888 39 H 0.108 0.892 40 H 0.059 0.941 41 H 0.079 0.921 42 H 0.102 0.898 43 H 0.076 0.924 44 H 0.094 0.906 45 H 0.092 0.908 46 H 0.057 0.943 47 H 0.062 0.938 48 H 0.113 0.887 49 H 0.010 0.990 50 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.381 10.785 -6.185 25.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.172 4.172 3 C 0.052 3.948 4 H 0.052 0.948 5 C 0.042 3.958 6 H 0.108 0.892 7 N -0.365 5.365 8 C 0.304 3.696 9 O -0.371 6.371 10 C -0.014 4.014 11 H 0.112 0.888 12 C -0.015 4.015 13 O -0.292 6.292 14 C -0.034 4.034 15 C -0.049 4.049 16 N -0.354 5.354 17 C 0.283 3.717 18 C -0.232 4.232 19 O -0.354 6.354 20 C -0.186 4.186 21 C 0.022 3.978 22 N -0.319 5.319 23 C -0.347 4.347 24 H 0.095 0.905 25 C -0.207 4.207 26 N -0.568 5.568 27 Si 0.744 3.256 28 H -0.217 1.217 29 H -0.217 1.217 30 H -0.207 1.207 31 H 0.069 0.931 32 H 0.063 0.937 33 H 0.066 0.934 34 H 0.080 0.920 35 H 0.075 0.925 36 H 0.227 0.773 37 H 0.086 0.914 38 H 0.130 0.870 39 H 0.126 0.874 40 H 0.077 0.923 41 H 0.097 0.903 42 H 0.120 0.880 43 H 0.095 0.905 44 H 0.113 0.887 45 H 0.111 0.889 46 H 0.075 0.925 47 H 0.081 0.919 48 H 0.131 0.869 49 H 0.029 0.971 50 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -21.518 10.023 -6.815 24.697 hybrid contribution 0.566 -0.061 0.938 1.097 sum -20.951 9.963 -5.877 23.932 Atomic orbital electron populations 1.21776 0.97229 1.00533 1.00959 1.22029 0.93758 0.99319 1.02124 1.21045 0.86860 0.93227 0.93681 0.94797 1.21998 0.83557 0.92294 0.97989 0.89191 1.45913 1.26834 1.52840 1.10864 1.19488 0.83339 0.81781 0.84991 1.90722 1.72043 1.51335 1.23009 1.21835 0.96327 0.89886 0.93320 0.88829 1.22852 0.83127 0.91514 1.04025 1.87993 1.43104 1.49221 1.48842 1.23035 0.98238 0.91310 0.90799 1.22532 0.84368 0.94070 1.03939 1.47964 1.16224 1.33878 1.37290 1.20912 0.82815 0.86886 0.81106 1.21989 1.04427 0.96688 1.00102 1.91077 1.34106 1.43955 1.66254 1.23305 0.96203 0.98731 1.00345 1.22071 0.95504 0.93709 0.86536 1.44492 0.98344 1.68821 1.20272 1.19025 0.88169 1.29527 0.97975 0.90510 1.24792 0.96462 1.01197 0.98209 1.69757 1.08860 1.47914 1.30306 0.86088 0.79941 0.78261 0.81291 1.21701 1.21722 1.20745 0.93110 0.93735 0.93440 0.91960 0.92474 0.77348 0.91388 0.87036 0.87379 0.92314 0.90322 0.88013 0.90509 0.88709 0.88901 0.92458 0.91932 0.86923 0.97148 0.93752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.19 9.78 37.16 0.36 -1.83 16 2 C -0.13 -2.50 5.41 -26.73 -0.14 -2.65 16 3 C 0.16 3.30 2.94 -66.95 -0.20 3.11 16 4 H 0.03 0.69 7.72 -51.93 -0.40 0.29 16 5 C 0.15 2.84 1.95 -66.10 -0.13 2.71 16 6 H 0.09 1.91 7.20 -51.93 -0.37 1.54 16 7 N -0.71 -11.19 4.56 -52.04 -0.24 -11.43 16 8 C 0.52 8.21 5.08 -10.98 -0.06 8.15 16 9 O -0.50 -9.94 13.28 -20.24 -0.27 -10.21 16 10 C 0.09 1.08 3.49 -68.58 -0.24 0.85 16 11 H 0.09 0.92 7.96 -51.93 -0.41 0.51 16 12 C 0.06 0.63 6.28 37.31 0.23 0.87 16 13 O -0.37 -3.45 10.74 -35.23 -0.38 -3.83 16 14 C 0.04 0.28 6.99 37.31 0.26 0.54 16 15 C 0.07 0.46 6.40 -3.54 -0.02 0.44 16 16 N -0.61 -6.55 3.02 -166.06 -0.50 -7.06 16 17 C 0.49 6.47 7.58 -10.99 -0.08 6.38 16 18 C -0.17 -1.40 9.99 36.01 0.36 -1.04 16 19 O -0.48 -8.97 12.15 -20.25 -0.25 -9.22 16 20 C -0.15 -3.19 6.77 -24.58 -0.17 -3.36 16 21 C 0.15 3.76 5.99 -2.53 -0.02 3.75 16 22 N -0.60 -15.24 3.13 -162.58 -0.51 -15.75 16 23 C -0.22 -6.05 9.81 -15.06 -0.15 -6.19 16 24 H 0.08 2.05 7.71 -52.48 -0.40 1.64 16 25 C -0.01 -0.32 5.49 -17.43 -0.10 -0.41 16 26 N -0.92 -27.18 10.05 55.49 0.56 -26.62 16 27 Si 0.91 22.22 29.55 -169.99 -5.02 17.20 16 28 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 29 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 30 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 31 H 0.05 0.75 6.74 -51.93 -0.35 0.40 16 32 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.06 1.24 7.81 -51.93 -0.41 0.83 16 35 H 0.06 1.15 8.08 -51.93 -0.42 0.74 16 36 H 0.39 5.21 8.24 -40.82 -0.34 4.88 16 37 H 0.07 0.78 8.12 -51.93 -0.42 0.36 16 38 H 0.11 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.11 0.40 8.14 -51.93 -0.42 -0.03 16 40 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.10 0.38 5.44 -51.93 -0.28 0.10 16 43 H 0.08 0.37 5.42 -51.93 -0.28 0.09 16 44 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 45 H 0.09 0.71 8.14 -51.92 -0.42 0.29 16 46 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 47 H 0.06 1.41 8.14 -51.93 -0.42 0.98 16 48 H 0.11 3.22 5.71 -51.93 -0.30 2.92 16 49 H 0.01 0.29 8.14 -51.93 -0.42 -0.14 16 50 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 385.75 15.07 5.81 5.81 Total: -1.00 -36.06 385.75 -9.04 -45.10 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: -8.17 Total: 4.69 kcal Atomic # 6 Polarization: 11.38 SS G_CDS: -0.08 Total: 11.30 kcal Atomic # 7 Polarization: -60.16 SS G_CDS: -0.69 Total: -60.85 kcal Atomic # 8 Polarization: -22.36 SS G_CDS: -0.89 Total: -23.26 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -36.06 -9.04 -45.10 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087834701.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.309 kcal (2) G-P(sol) polarization free energy of solvation -36.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds