Wall clock time and date at job start Tue Mar 31 2020 23:34:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.47361 * 2 1 4 4 H 1.09003 * 109.86798 * 56.36510 * 3 2 1 5 5 C 1.54317 * 109.88160 * 295.18883 * 3 2 1 6 6 H 1.08998 * 110.72233 * 336.74897 * 5 3 2 7 7 N 1.46497 * 110.72051 * 100.02566 * 5 3 2 8 8 C 1.34785 * 120.00073 * 204.99800 * 7 5 3 9 9 O 1.21276 * 119.99667 * 0.02562 * 8 7 5 10 10 C 1.50694 * 120.00152 * 179.97438 * 8 7 5 11 11 H 1.09006 * 109.68020 * 9.91374 * 10 8 7 12 12 C 1.53297 * 109.68234 * 249.39632 * 10 8 7 13 13 O 1.42981 * 109.21516 * 188.01506 * 12 10 8 14 14 C 1.42964 * 114.19971 * 62.52137 * 13 12 10 15 15 C 1.53288 * 109.22051 * 297.43379 * 14 13 12 16 16 N 1.47152 * 108.38833 * 52.30891 * 15 14 13 17 17 C 1.34775 * 120.98607 * 129.48297 * 16 15 14 18 18 C 1.50700 * 119.99749 * 5.96928 * 17 16 15 19 19 O 1.21285 * 120.00014 * 185.97300 * 17 16 15 20 20 C 1.55161 * 102.94102 * 218.38720 * 5 3 2 21 21 C 1.54905 * 101.57883 * 35.50176 * 20 5 3 22 22 N 1.47021 * 109.88041 * 177.37678 * 3 2 1 23 23 C 1.36932 * 125.65168 * 298.31853 * 22 3 2 24 24 H 1.08006 * 119.99855 * 2.60221 * 23 22 3 25 25 C 1.38809 * 120.00150 * 182.59913 * 23 22 3 26 26 N 1.31620 * 120.00230 * 359.97438 * 25 23 22 27 27 Si 1.86803 * 120.00194 * 180.02562 * 25 23 22 28 28 H 1.48500 * 109.47025 * 89.99939 * 27 25 23 29 29 H 1.48497 * 109.47218 * 209.99655 * 27 25 23 30 30 H 1.48499 * 109.46825 * 330.00100 * 27 25 23 31 31 H 1.09002 * 109.47042 * 55.21883 * 1 2 3 32 32 H 1.08999 * 109.47299 * 175.21956 * 1 2 3 33 33 H 1.09003 * 109.46897 * 295.21890 * 1 2 3 34 34 H 1.09005 * 109.47109 * 120.00306 * 2 1 3 35 35 H 1.09000 * 109.46956 * 239.99890 * 2 1 3 36 36 H 0.97002 * 120.00251 * 24.99675 * 7 5 3 37 37 H 1.08996 * 109.51168 * 307.89918 * 12 10 8 38 38 H 1.09001 * 109.51353 * 68.05236 * 12 10 8 39 39 H 1.09001 * 109.50627 * 177.51146 * 14 13 12 40 40 H 1.09002 * 109.50954 * 57.36196 * 14 13 12 41 41 H 1.08995 * 109.68686 * 292.57950 * 15 14 13 42 42 H 1.09006 * 109.71202 * 172.04636 * 15 14 13 43 43 H 1.08992 * 109.47221 * 5.93124 * 18 17 16 44 44 H 1.09001 * 109.46967 * 125.93653 * 18 17 16 45 45 H 1.09008 * 109.47242 * 245.92785 * 18 17 16 46 46 H 1.09000 * 111.00178 * 277.43026 * 20 5 3 47 47 H 1.08998 * 111.03530 * 153.59135 * 20 5 3 48 48 H 1.08998 * 110.36829 * 204.14775 * 21 20 5 49 49 H 1.09001 * 110.36998 * 81.83094 * 21 20 5 50 50 H 0.96991 * 120.00417 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6282 1.9811 0.8535 5 6 1.6327 2.1432 -1.3132 6 1 1.4528 1.4116 -2.1009 7 7 0.4521 2.9856 -1.1066 8 6 -0.3589 3.2752 -2.1435 9 8 -0.1115 2.8381 -3.2473 10 6 -1.5737 4.1412 -1.9308 11 1 -1.5413 4.5806 -0.9338 12 6 -2.8434 3.2956 -2.0814 13 8 -3.9859 4.1550 -2.0644 14 6 -4.0298 5.0930 -3.1424 15 6 -2.8209 6.0305 -3.0451 16 7 -1.6040 5.2095 -2.9424 17 6 -0.5482 5.4298 -3.7507 18 6 -0.5483 6.6122 -4.6850 19 8 0.4020 4.6763 -3.7261 20 6 2.8755 3.0114 -1.6438 21 6 4.0296 2.1015 -1.1542 22 7 3.5089 1.4534 0.0633 23 6 4.2676 0.9466 1.0843 24 1 3.7904 0.4523 1.9177 25 6 5.6499 1.0678 1.0483 26 7 6.2315 1.6696 0.0324 27 14 6.6849 0.3757 2.4409 28 1 7.0489 -1.0311 2.1351 29 1 7.9207 1.1857 2.5889 30 1 5.9078 0.4224 3.7055 31 1 -0.3633 0.5862 -0.8441 32 1 -0.3634 -1.0241 -0.0856 33 1 -0.3633 0.4379 0.9298 34 1 1.8934 -0.5139 0.8900 35 1 1.8933 -0.5139 -0.8900 36 1 0.2540 3.3349 -0.2236 37 1 -2.8100 2.7538 -3.0266 38 1 -2.9083 2.5862 -1.2563 39 1 -4.9486 5.6761 -3.0803 40 1 -4.0004 4.5582 -4.0917 41 1 -2.9147 6.6600 -2.1603 42 1 -2.7677 6.6557 -3.9364 43 1 -1.4276 7.2269 -4.4930 44 1 0.3520 7.2045 -4.5215 45 1 -0.5691 6.2602 -5.7165 46 1 2.8554 3.9495 -1.0891 47 1 2.9505 3.1951 -2.7156 48 1 4.9102 2.6992 -0.9188 49 1 4.2691 1.3529 -1.9095 50 1 7.1973 1.7547 0.0074 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087834701.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:34:49 Heat of formation + Delta-G solvation = -78.226816 kcal Electronic energy + Delta-G solvation = -31958.989239 eV Core-core repulsion = 27794.520379 eV Total energy + Delta-G solvation = -4164.468860 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.07796 -40.41730 -39.28008 -38.87215 -35.85834 -35.57708 -34.29188 -33.57181 -32.92582 -30.81929 -30.72815 -28.67615 -28.00324 -26.57175 -25.52841 -23.76642 -23.20833 -22.32154 -21.71711 -21.37461 -19.97059 -18.82801 -18.71614 -17.86013 -17.76091 -17.20240 -16.82775 -16.60624 -16.38449 -16.05422 -15.85154 -15.75098 -15.50642 -15.26366 -14.98766 -14.66642 -14.44269 -14.30510 -14.13842 -13.67350 -13.60983 -13.22971 -13.21347 -13.00027 -12.95921 -12.86718 -12.72549 -12.54615 -12.43267 -12.24071 -12.08902 -11.98624 -11.93327 -11.88266 -11.48382 -11.35235 -11.31847 -10.85192 -10.74072 -10.26115 -9.81127 -9.54096 -8.90581 -7.73076 -5.21378 1.39944 1.47083 1.49456 1.57949 1.65766 2.08417 2.19943 2.51224 2.83277 3.34465 3.49477 3.57427 3.69426 3.83372 3.85989 3.90454 3.96556 4.04505 4.10375 4.18964 4.24265 4.35501 4.39283 4.40102 4.56997 4.58543 4.61146 4.62681 4.64710 4.73235 4.78574 4.88253 4.92034 5.03934 5.06399 5.15450 5.17515 5.30258 5.32609 5.45096 5.49381 5.56279 5.70074 5.78388 5.99494 6.30294 6.31118 6.64792 7.09869 7.17718 7.51451 7.77826 8.42453 9.26989 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.019674 B = 0.003050 C = 0.002769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1422.885730 B = 9178.376005 C =10108.227973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.127 4.127 3 C 0.159 3.841 4 H 0.052 0.948 5 C 0.168 3.832 6 H 0.069 0.931 7 N -0.705 5.705 8 C 0.521 3.479 9 O -0.541 6.541 10 C 0.096 3.904 11 H 0.119 0.881 12 C 0.072 3.928 13 O -0.379 6.379 14 C 0.037 3.963 15 C 0.070 3.930 16 N -0.613 5.613 17 C 0.481 3.519 18 C -0.164 4.164 19 O -0.550 6.550 20 C -0.130 4.130 21 C 0.154 3.846 22 N -0.613 5.613 23 C -0.226 4.226 24 H 0.088 0.912 25 C -0.071 4.071 26 N -0.952 5.952 27 Si 0.981 3.019 28 H -0.290 1.290 29 H -0.296 1.296 30 H -0.264 1.264 31 H 0.049 0.951 32 H 0.060 0.940 33 H 0.069 0.931 34 H 0.052 0.948 35 H 0.034 0.966 36 H 0.408 0.592 37 H 0.047 0.953 38 H 0.127 0.873 39 H 0.142 0.858 40 H 0.052 0.948 41 H 0.098 0.902 42 H 0.130 0.870 43 H 0.116 0.884 44 H 0.093 0.907 45 H 0.096 0.904 46 H 0.060 0.940 47 H 0.049 0.951 48 H 0.083 0.917 49 H -0.022 1.022 50 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.972 12.268 -4.702 29.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.166 4.166 3 C 0.052 3.948 4 H 0.069 0.931 5 C 0.062 3.938 6 H 0.087 0.913 7 N -0.358 5.358 8 C 0.307 3.693 9 O -0.417 6.417 10 C -0.012 4.012 11 H 0.136 0.864 12 C -0.007 4.007 13 O -0.297 6.297 14 C -0.040 4.040 15 C -0.051 4.051 16 N -0.351 5.351 17 C 0.271 3.729 18 C -0.223 4.223 19 O -0.427 6.427 20 C -0.170 4.170 21 C 0.029 3.971 22 N -0.338 5.338 23 C -0.355 4.355 24 H 0.105 0.895 25 C -0.263 4.263 26 N -0.603 5.603 27 Si 0.810 3.190 28 H -0.217 1.217 29 H -0.223 1.223 30 H -0.189 1.189 31 H 0.068 0.932 32 H 0.079 0.921 33 H 0.088 0.912 34 H 0.071 0.929 35 H 0.052 0.948 36 H 0.245 0.755 37 H 0.065 0.935 38 H 0.145 0.855 39 H 0.160 0.840 40 H 0.070 0.930 41 H 0.116 0.884 42 H 0.148 0.852 43 H 0.135 0.865 44 H 0.112 0.888 45 H 0.114 0.886 46 H 0.078 0.922 47 H 0.068 0.932 48 H 0.101 0.899 49 H -0.004 1.004 50 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -25.226 11.544 -5.298 28.244 hybrid contribution 1.592 -0.477 0.408 1.711 sum -23.634 11.068 -4.890 26.551 Atomic orbital electron populations 1.21663 0.93569 1.01897 1.02090 1.21915 0.96881 0.97309 1.00525 1.21237 0.84231 0.94755 0.94559 0.93083 1.21454 0.84035 0.91593 0.96690 0.91267 1.45705 1.25640 1.52442 1.11986 1.20198 0.84015 0.81221 0.83907 1.90707 1.73315 1.52868 1.24766 1.21851 0.94483 0.89972 0.94845 0.86372 1.22739 0.82775 0.91526 1.03631 1.87998 1.42244 1.49573 1.49909 1.23318 0.99802 0.91054 0.89781 1.22896 0.82019 0.93845 1.06303 1.48185 1.17143 1.33612 1.36206 1.21822 0.82266 0.87325 0.81460 1.21989 1.06293 0.95069 0.98915 1.91051 1.36714 1.46607 1.68338 1.23050 0.96298 0.98350 0.99283 1.21751 0.96033 0.93057 0.86290 1.44728 1.00593 1.68787 1.19644 1.19428 0.88711 1.28906 0.98468 0.89472 1.25673 0.97809 1.02146 1.00702 1.70017 1.08534 1.49466 1.32244 0.85025 0.77977 0.77019 0.78992 1.21746 1.22258 1.18905 0.93190 0.92128 0.91192 0.92896 0.94756 0.75536 0.93452 0.85538 0.84005 0.92954 0.88355 0.85188 0.86528 0.88818 0.88550 0.92150 0.93205 0.89914 1.00357 0.94472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.71 9.78 71.98 0.70 -3.01 16 2 C -0.13 -4.75 5.41 30.60 0.17 -4.59 16 3 C 0.16 6.57 2.94 45.34 0.13 6.70 16 4 H 0.05 1.98 7.72 -2.39 -0.02 1.96 16 5 C 0.17 6.69 1.95 46.18 0.09 6.78 16 6 H 0.07 3.08 7.20 -2.39 -0.02 3.06 16 7 N -0.70 -21.70 4.56 -436.93 -1.99 -23.69 16 8 C 0.52 16.27 5.08 87.65 0.45 16.71 16 9 O -0.54 -22.29 13.28 21.65 0.29 -22.00 16 10 C 0.10 2.03 3.49 44.22 0.15 2.18 16 11 H 0.12 1.93 7.96 -2.38 -0.02 1.91 16 12 C 0.07 1.29 6.28 72.08 0.45 1.74 16 13 O -0.38 -5.75 10.74 -148.98 -1.60 -7.35 16 14 C 0.04 0.33 6.99 72.08 0.50 0.84 16 15 C 0.07 0.58 6.40 86.35 0.55 1.13 16 16 N -0.61 -11.71 3.02 -797.68 -2.41 -14.11 16 17 C 0.48 12.15 7.58 87.66 0.66 12.82 16 18 C -0.16 -2.32 9.99 71.24 0.71 -1.60 16 19 O -0.55 -21.08 12.15 21.62 0.26 -20.82 16 20 C -0.13 -5.96 6.77 31.99 0.22 -5.75 16 21 C 0.15 8.40 5.99 86.85 0.52 8.92 16 22 N -0.61 -32.28 3.13 -668.28 -2.09 -34.37 16 23 C -0.23 -12.69 9.81 84.03 0.82 -11.86 16 24 H 0.09 4.60 7.71 -2.91 -0.02 4.58 16 25 C -0.07 -4.12 5.49 84.86 0.47 -3.65 16 26 N -0.95 -58.66 10.05 21.65 0.22 -58.45 16 27 Si 0.98 46.33 29.55 68.60 2.03 48.36 16 28 H -0.29 -13.62 7.11 99.48 0.71 -12.92 16 29 H -0.30 -14.10 7.11 99.48 0.71 -13.39 16 30 H -0.26 -11.62 7.11 99.48 0.71 -10.92 16 31 H 0.05 1.40 6.74 -2.39 -0.02 1.38 16 32 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.05 2.07 7.81 -2.38 -0.02 2.05 16 35 H 0.03 1.42 8.08 -2.39 -0.02 1.40 16 36 H 0.41 10.03 8.24 -92.71 -0.76 9.26 16 37 H 0.05 1.05 8.12 -2.39 -0.02 1.03 16 38 H 0.13 1.84 8.14 -2.39 -0.02 1.82 16 39 H 0.14 0.34 8.14 -2.39 -0.02 0.32 16 40 H 0.05 0.55 8.14 -2.39 -0.02 0.54 16 41 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 42 H 0.13 0.32 5.44 -2.38 -0.01 0.31 16 43 H 0.12 0.62 5.42 -2.39 -0.01 0.61 16 44 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 45 H 0.10 1.32 8.14 -2.38 -0.02 1.30 16 46 H 0.06 2.70 8.14 -2.39 -0.02 2.68 16 47 H 0.05 2.39 8.14 -2.39 -0.02 2.37 16 48 H 0.08 5.04 5.71 -2.39 -0.01 5.02 16 49 H -0.02 -1.28 8.14 -2.39 -0.02 -1.30 16 50 H 0.25 14.72 8.31 -92.72 -0.77 13.94 16 Total: -1.00 -84.55 385.75 1.49 -83.06 By element: Atomic # 1 Polarization: 21.82 SS G_CDS: 0.18 Total: 22.01 kcal Atomic # 6 Polarization: 20.76 SS G_CDS: 6.60 Total: 27.36 kcal Atomic # 7 Polarization: -124.35 SS G_CDS: -6.27 Total: -130.63 kcal Atomic # 8 Polarization: -49.11 SS G_CDS: -1.05 Total: -50.16 kcal Atomic # 14 Polarization: 46.33 SS G_CDS: 2.03 Total: 48.36 kcal Total: -84.55 1.49 -83.06 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087834701.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.830 kcal (2) G-P(sol) polarization free energy of solvation -84.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds