Wall clock time and date at job start Tue Mar 31 2020 23:13:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50697 * 120.00342 * 2 1 4 4 C 1.52992 * 109.47138 * 119.99561 * 3 2 1 5 5 O 1.42903 * 109.47007 * 359.97438 * 3 2 1 6 6 C 1.52994 * 109.47108 * 240.00126 * 3 2 1 7 7 C 1.50698 * 109.47531 * 55.87385 * 6 3 2 8 8 O 1.21290 * 120.00061 * 5.65854 * 7 6 3 9 9 N 1.34773 * 120.00584 * 185.65169 * 7 6 3 10 10 C 1.46500 * 120.00665 * 180.02562 * 9 7 6 11 11 C 1.52998 * 109.47502 * 180.02562 * 10 9 7 12 12 C 1.53783 * 113.61517 * 274.13751 * 11 10 9 13 13 C 1.53955 * 87.01737 * 220.04832 * 12 11 10 14 14 N 1.46897 * 113.74378 * 139.94483 * 13 12 11 15 15 C 1.46904 * 111.00235 * 107.39835 * 14 13 12 16 16 C 1.50698 * 109.46939 * 180.02562 * 15 14 13 17 17 O 1.21291 * 120.00281 * 0.02562 * 16 15 14 18 18 N 1.34777 * 119.99431 * 180.02562 * 16 15 14 19 19 C 1.37108 * 119.99746 * 180.02562 * 18 16 15 20 20 H 1.08008 * 119.99968 * 359.97438 * 19 18 16 21 21 C 1.38949 * 119.99959 * 180.02562 * 19 18 16 22 22 N 1.31409 * 119.99979 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 119.99784 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47085 * 359.97438 * 23 21 19 25 25 H 1.48505 * 109.46923 * 119.99776 * 23 21 19 26 26 H 1.48497 * 109.46969 * 239.99584 * 23 21 19 27 27 C 1.53778 * 87.11477 * 25.36130 * 13 12 11 28 28 H 1.07999 * 119.99594 * 0.02562 * 1 2 3 29 29 H 1.08001 * 120.00308 * 179.72620 * 1 2 3 30 30 H 1.07999 * 119.99594 * 179.97438 * 2 1 3 31 31 H 1.09005 * 109.47381 * 64.94875 * 4 3 2 32 32 H 1.09010 * 109.47031 * 184.94262 * 4 3 2 33 33 H 1.08994 * 109.47671 * 304.94129 * 4 3 2 34 34 H 0.96700 * 114.00202 * 300.00513 * 5 3 2 35 35 H 1.09004 * 109.47515 * 175.87861 * 6 3 2 36 36 H 1.08999 * 109.47033 * 295.87596 * 6 3 2 37 37 H 0.97003 * 119.99883 * 0.02562 * 9 7 6 38 38 H 1.09009 * 109.46839 * 300.00138 * 10 9 7 39 39 H 1.09001 * 109.46835 * 59.99872 * 10 9 7 40 40 H 1.09007 * 112.84840 * 45.33540 * 11 10 9 41 41 H 1.09002 * 113.61069 * 334.56324 * 12 11 10 42 42 H 1.08996 * 113.61291 * 105.46850 * 12 11 10 43 43 H 1.09007 * 113.53492 * 270.80829 * 13 12 11 44 44 H 1.00898 * 111.00104 * 343.44469 * 14 13 12 45 45 H 1.08993 * 109.47052 * 300.00032 * 15 14 13 46 46 H 1.08994 * 109.46969 * 60.00092 * 15 14 13 47 47 H 0.96997 * 120.00832 * 359.97438 * 18 16 15 48 48 H 0.96996 * 119.99753 * 180.02562 * 22 21 19 49 49 H 1.08998 * 113.61608 * 220.09230 * 27 13 12 50 50 H 1.08999 * 113.61575 * 89.18908 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 2.9431 1.3861 1.2492 5 8 1.1350 2.3912 -0.0006 6 6 2.9432 1.3860 -1.2492 7 6 2.0892 1.2048 -2.4776 8 8 0.8831 1.1309 -2.3722 9 7 2.6655 1.1248 -3.6933 10 6 1.8353 0.9491 -4.8875 11 6 2.7306 0.8883 -6.1267 12 6 3.0767 2.2706 -6.7050 13 6 2.8923 1.6443 -8.0993 14 7 2.2092 2.5239 -9.0571 15 6 3.1491 3.0394 -10.0616 16 6 2.4138 3.9360 -11.0241 17 8 1.2240 4.1272 -10.8866 18 7 3.0784 4.5254 -12.0376 19 6 2.4096 5.3416 -12.9131 20 1 1.3501 5.5118 -12.7907 21 6 3.0946 5.9489 -13.9584 22 7 4.3836 5.7413 -14.1076 23 14 2.1832 7.0603 -15.1515 24 1 0.7502 7.1286 -14.7681 25 1 2.7732 8.4224 -15.1083 26 1 2.3017 6.5129 -16.5268 27 6 1.9605 0.6200 -7.4305 28 1 -0.5399 0.9353 -0.0004 29 1 -0.5401 -0.9353 -0.0045 30 1 1.8500 -0.9353 0.0004 31 1 3.7079 0.6106 1.2061 32 1 3.4205 2.3650 1.2946 33 1 2.3277 1.2406 2.1370 34 1 0.5439 2.4030 -0.7658 35 1 3.4320 2.3596 -1.2870 36 1 3.6988 0.6013 -1.2130 37 1 3.6300 1.1835 -3.7776 38 1 1.2689 0.0215 -4.8030 39 1 1.1461 1.7888 -4.9775 40 1 3.5979 0.2421 -5.9910 41 1 2.3398 3.0389 -6.4706 42 1 4.0993 2.5865 -6.4989 43 1 3.8048 1.2058 -8.5035 44 1 1.7376 3.2789 -8.5821 45 1 3.9358 3.6074 -9.5652 46 1 3.5916 2.2057 -10.6067 47 1 4.0300 4.3729 -12.1474 48 1 4.8619 6.1655 -14.8370 49 1 2.0834 -0.3946 -7.8092 50 1 0.9180 0.9362 -7.3948 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001100285453.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:13:07 Heat of formation + Delta-G solvation = -113.839122 kcal Electronic energy + Delta-G solvation = -28473.922227 eV Core-core repulsion = 24307.909101 eV Total energy + Delta-G solvation = -4166.013126 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.31468 -40.51436 -39.82020 -38.61340 -36.19429 -35.74549 -34.43701 -33.90454 -33.24396 -32.23204 -30.02134 -28.64096 -27.38840 -26.54909 -25.72293 -23.47348 -22.46837 -21.73548 -21.24505 -20.57600 -20.32003 -19.85261 -18.18885 -17.92955 -17.64386 -17.21280 -16.88965 -16.70249 -16.40431 -16.31153 -15.88988 -15.70478 -15.49343 -15.28781 -14.99395 -14.58577 -14.33173 -14.08774 -13.62807 -13.53103 -13.52817 -13.33814 -13.29489 -13.05403 -12.99078 -12.92238 -12.80155 -12.67581 -12.53967 -12.41780 -12.12949 -11.95607 -11.87003 -11.53433 -11.49639 -11.27997 -11.04139 -10.89798 -10.33689 -10.14610 -10.02058 -9.94291 -9.20370 -8.47680 -5.96380 1.36067 1.41565 1.45481 1.55675 1.67429 2.04753 2.22040 2.29159 2.97435 3.19686 3.33850 3.49933 3.60432 3.64000 3.74312 3.85108 3.92349 3.96833 4.06723 4.28221 4.34425 4.36883 4.44213 4.45824 4.52250 4.60332 4.63601 4.72125 4.74942 4.85901 4.88586 4.89245 4.94591 4.96407 5.13106 5.14956 5.24602 5.30229 5.39378 5.41330 5.53790 5.71193 5.92747 5.94413 6.20849 6.42842 6.58537 6.59839 6.71410 7.12172 7.30781 7.55757 8.11449 8.69858 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.026773 B = 0.001460 C = 0.001447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.591599 B =19176.513125 C =19351.820840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.189 4.189 3 C 0.166 3.834 4 C -0.133 4.133 5 O -0.579 6.579 6 C -0.160 4.160 7 C 0.506 3.494 8 O -0.574 6.574 9 N -0.715 5.715 10 C 0.136 3.864 11 C -0.100 4.100 12 C -0.158 4.158 13 C 0.060 3.940 14 N -0.676 5.676 15 C 0.066 3.934 16 C 0.435 3.565 17 O -0.626 6.626 18 N -0.573 5.573 19 C -0.336 4.336 20 H 0.077 0.923 21 C -0.011 4.011 22 N -0.919 5.919 23 Si 0.993 3.007 24 H -0.275 1.275 25 H -0.270 1.270 26 H -0.270 1.270 27 C -0.120 4.120 28 H 0.087 0.913 29 H 0.098 0.902 30 H 0.125 0.875 31 H 0.098 0.902 32 H 0.068 0.932 33 H 0.056 0.944 34 H 0.382 0.618 35 H 0.118 0.882 36 H 0.134 0.866 37 H 0.416 0.584 38 H 0.060 0.940 39 H 0.048 0.952 40 H 0.122 0.878 41 H 0.070 0.930 42 H 0.083 0.917 43 H 0.112 0.888 44 H 0.343 0.657 45 H 0.068 0.932 46 H 0.105 0.895 47 H 0.397 0.603 48 H 0.278 0.722 49 H 0.079 0.921 50 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.588 -13.974 27.918 31.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.207 4.207 3 C 0.125 3.875 4 C -0.190 4.190 5 O -0.389 6.389 6 C -0.200 4.200 7 C 0.293 3.707 8 O -0.455 6.455 9 N -0.367 5.367 10 C 0.012 3.988 11 C -0.119 4.119 12 C -0.197 4.197 13 C -0.050 4.050 14 N -0.307 5.307 15 C -0.066 4.066 16 C 0.222 3.778 17 O -0.513 6.513 18 N -0.210 5.210 19 C -0.465 4.465 20 H 0.095 0.905 21 C -0.211 4.211 22 N -0.560 5.560 23 Si 0.816 3.184 24 H -0.200 1.200 25 H -0.195 1.195 26 H -0.196 1.196 27 C -0.159 4.159 28 H 0.105 0.895 29 H 0.116 0.884 30 H 0.143 0.857 31 H 0.116 0.884 32 H 0.087 0.913 33 H 0.075 0.925 34 H 0.234 0.766 35 H 0.136 0.864 36 H 0.152 0.848 37 H 0.253 0.747 38 H 0.078 0.922 39 H 0.067 0.933 40 H 0.140 0.860 41 H 0.089 0.911 42 H 0.102 0.898 43 H 0.129 0.871 44 H 0.162 0.838 45 H 0.086 0.914 46 H 0.123 0.877 47 H 0.231 0.769 48 H 0.087 0.913 49 H 0.098 0.902 50 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 5.169 -14.195 28.049 31.859 hybrid contribution 0.248 1.121 -1.115 1.600 sum 5.417 -13.074 26.935 30.426 Atomic orbital electron populations 1.23687 0.96732 1.01433 0.98923 1.23493 0.96631 0.98801 1.01758 1.20110 0.88151 0.84369 0.94884 1.21752 0.98777 1.03784 0.94732 1.86430 1.51542 1.49811 1.51145 1.22455 0.99514 1.07144 0.90873 1.21152 0.88790 0.75115 0.85601 1.90654 1.16553 1.51470 1.86774 1.45933 1.11538 1.73669 1.05580 1.21208 0.93253 1.00804 0.83551 1.22531 0.99388 0.97852 0.92115 1.23764 1.02577 0.96774 0.96573 1.23251 0.97384 0.94848 0.89478 1.60038 1.29244 1.24444 1.16969 1.21572 0.93762 0.97752 0.93492 1.21011 0.88012 0.84429 0.84302 1.90493 1.17523 1.67030 1.76257 1.41940 1.11418 1.42332 1.25319 1.19707 0.94871 1.24349 1.07595 0.90496 1.26018 0.96516 0.99300 0.99295 1.69669 1.08315 1.44876 1.33137 0.84879 0.77991 0.77829 0.77674 1.19971 1.19500 1.19553 1.23037 0.98993 0.99611 0.94234 0.89463 0.88374 0.85739 0.88381 0.91280 0.92532 0.76586 0.86396 0.84835 0.74740 0.92205 0.93319 0.85979 0.91092 0.89804 0.87051 0.83750 0.91434 0.87743 0.76903 0.91268 0.90209 0.91050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.13 12.63 67.78 0.86 -2.28 16 2 C -0.19 -2.85 7.43 25.64 0.19 -2.66 16 3 C 0.17 2.26 1.08 -11.55 -0.01 2.25 16 4 C -0.13 -1.26 8.83 71.98 0.64 -0.62 16 5 O -0.58 -11.63 11.94 -132.59 -1.58 -13.21 16 6 C -0.16 -1.40 4.99 29.85 0.15 -1.25 16 7 C 0.51 7.51 7.31 87.66 0.64 8.16 16 8 O -0.57 -12.99 11.96 13.33 0.16 -12.84 16 9 N -0.72 -7.90 5.56 -463.05 -2.57 -10.47 16 10 C 0.14 2.03 5.50 86.38 0.47 2.51 16 11 C -0.10 -1.22 3.75 -10.27 -0.04 -1.26 16 12 C -0.16 -2.46 7.27 31.18 0.23 -2.23 16 13 C 0.06 1.21 4.18 45.50 0.19 1.40 16 14 N -0.68 -20.63 6.24 -492.56 -3.08 -23.71 16 15 C 0.07 2.21 6.01 85.56 0.51 2.72 16 16 C 0.43 20.74 7.82 87.66 0.69 21.42 16 17 O -0.63 -35.24 15.78 -3.06 -0.05 -35.29 16 18 N -0.57 -29.40 5.29 -306.97 -1.62 -31.02 16 19 C -0.34 -19.20 9.68 84.04 0.81 -18.39 16 20 H 0.08 4.73 7.16 -2.91 -0.02 4.71 16 21 C -0.01 -0.61 5.50 84.93 0.47 -0.15 16 22 N -0.92 -49.30 13.05 21.66 0.28 -49.02 16 23 Si 0.99 43.02 29.55 68.60 2.03 45.05 16 24 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 25 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 26 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 27 C -0.12 -2.13 7.44 31.12 0.23 -1.90 16 28 H 0.09 1.83 6.41 -2.91 -0.02 1.81 16 29 H 0.10 1.60 8.06 -2.91 -0.02 1.58 16 30 H 0.12 1.41 8.06 -2.91 -0.02 1.38 16 31 H 0.10 0.39 8.14 -2.38 -0.02 0.37 16 32 H 0.07 0.62 8.14 -2.38 -0.02 0.60 16 33 H 0.06 0.65 8.14 -2.39 -0.02 0.64 16 34 H 0.38 8.21 5.77 -74.06 -0.43 7.78 16 35 H 0.12 0.78 8.14 -2.38 -0.02 0.76 16 36 H 0.13 0.31 8.14 -2.39 -0.02 0.29 16 37 H 0.42 2.00 8.47 -92.71 -0.79 1.22 16 38 H 0.06 1.03 8.14 -2.38 -0.02 1.01 16 39 H 0.05 0.96 7.88 -2.39 -0.02 0.94 16 40 H 0.12 0.91 8.14 -2.38 -0.02 0.89 16 41 H 0.07 1.36 7.61 -2.39 -0.02 1.34 16 42 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 43 H 0.11 1.92 7.87 -2.38 -0.02 1.90 16 44 H 0.34 11.33 7.91 -89.70 -0.71 10.62 16 45 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 46 H 0.10 3.10 8.13 -2.39 -0.02 3.08 16 47 H 0.40 19.17 7.90 -92.71 -0.73 18.44 16 48 H 0.28 13.89 8.31 -92.71 -0.77 13.12 16 49 H 0.08 1.28 8.14 -2.39 -0.02 1.27 16 50 H 0.07 1.56 8.10 -2.39 -0.02 1.54 16 Total: -1.00 -74.83 409.14 -2.09 -76.92 By element: Atomic # 1 Polarization: 47.55 SS G_CDS: -1.68 Total: 45.87 kcal Atomic # 6 Polarization: 1.70 SS G_CDS: 6.02 Total: 7.72 kcal Atomic # 7 Polarization: -107.23 SS G_CDS: -6.99 Total: -114.22 kcal Atomic # 8 Polarization: -59.87 SS G_CDS: -1.47 Total: -61.34 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 2.03 Total: 45.05 kcal Total: -74.83 -2.09 -76.92 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100285453.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.919 kcal (2) G-P(sol) polarization free energy of solvation -74.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds