Wall clock time and date at job start Tue Mar 31 2020 22:34:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52996 * 109.47379 * 2 1 4 4 C 1.52999 * 109.46888 * 239.99680 * 2 1 3 5 5 N 1.46502 * 109.46960 * 60.00202 * 4 2 1 6 6 C 1.36936 * 120.00097 * 179.97438 * 5 4 2 7 7 H 1.08001 * 120.00042 * 0.02562 * 6 5 4 8 8 C 1.38811 * 120.00455 * 180.02562 * 6 5 4 9 9 N 1.31614 * 120.00565 * 180.02562 * 8 6 5 10 10 Si 1.86805 * 119.99805 * 0.02562 * 8 6 5 11 11 H 1.48504 * 109.46963 * 90.00020 * 10 8 6 12 12 H 1.48491 * 109.47203 * 210.00033 * 10 8 6 13 13 H 1.48502 * 109.46889 * 330.00518 * 10 8 6 14 14 C 1.53004 * 109.46866 * 120.00144 * 2 1 3 15 15 C 1.53035 * 109.45754 * 299.99755 * 14 2 1 16 16 C 1.53196 * 109.30995 * 181.38857 * 15 14 2 17 17 N 1.46929 * 108.77486 * 305.36045 * 16 15 14 18 18 C 1.34766 * 120.63348 * 233.63046 * 17 16 15 19 19 O 1.21286 * 120.00250 * 0.02562 * 18 17 16 20 20 C 1.50699 * 120.00319 * 180.02562 * 18 17 16 21 21 H 1.09003 * 110.50397 * 42.74550 * 20 18 17 22 22 C 1.54088 * 110.56516 * 280.00241 * 20 18 17 23 23 O 1.45699 * 104.00733 * 241.42213 * 22 20 18 24 24 C 1.33770 * 109.47867 * 0.02562 * 23 22 20 25 25 O 1.21510 * 123.06893 * 180.02562 * 24 23 22 26 26 N 1.34005 * 113.85550 * 359.97438 * 24 23 22 27 27 C 1.46924 * 118.73409 * 53.61317 * 17 16 15 28 28 C 1.53042 * 109.46094 * 60.06738 * 14 2 1 29 29 H 1.09004 * 109.46963 * 300.00497 * 1 2 3 30 30 H 1.09004 * 109.46766 * 59.99841 * 1 2 3 31 31 H 1.08998 * 109.47393 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47076 * 180.02562 * 3 2 1 33 33 H 1.09004 * 109.47253 * 300.00386 * 3 2 1 34 34 H 1.08999 * 109.47056 * 59.99685 * 3 2 1 35 35 H 1.08998 * 109.47272 * 180.02562 * 4 2 1 36 36 H 1.08995 * 109.47413 * 300.00682 * 4 2 1 37 37 H 0.97001 * 120.00514 * 0.02562 * 5 4 2 38 38 H 0.97001 * 120.00422 * 179.97438 * 9 8 6 39 39 H 1.08999 * 109.44536 * 180.02562 * 14 2 1 40 40 H 1.09001 * 109.49969 * 61.43886 * 15 14 2 41 41 H 1.09001 * 109.50249 * 301.33501 * 15 14 2 42 42 H 1.08998 * 109.58804 * 65.15483 * 16 15 14 43 43 H 1.09003 * 109.58394 * 185.58059 * 16 15 14 44 44 H 1.08993 * 110.52273 * 0.05884 * 22 20 18 45 45 H 1.08999 * 110.51915 * 122.79493 * 22 20 18 46 46 H 0.96997 * 125.55789 * 180.02562 * 26 24 23 47 47 H 1.08999 * 109.58511 * 186.60055 * 27 17 16 48 48 H 1.08999 * 109.58969 * 66.17655 * 27 17 16 49 49 H 1.09006 * 109.49541 * 298.56448 * 28 14 2 50 50 H 1.09001 * 109.49602 * 58.65805 * 28 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 1.5517 -0.0307 -2.4454 6 6 1.8828 -0.4983 -3.6891 7 1 2.5037 -1.3764 -3.7882 8 6 1.4206 0.1563 -4.8226 9 7 1.7385 -0.2933 -6.0180 10 14 0.3473 1.6756 -4.6512 11 1 1.2065 2.8861 -4.6056 12 1 -0.5729 1.7653 -5.8132 13 1 -0.4447 1.5834 -3.3984 14 6 2.0400 -0.7213 1.2493 15 6 1.5297 0.0004 2.4986 16 6 2.0706 -0.7040 3.7469 17 7 1.7085 -2.1264 3.6816 18 6 1.0551 -2.7163 4.7020 19 8 0.7600 -2.0721 5.6864 20 6 0.6911 -4.1764 4.6202 21 1 1.5202 -4.7542 4.2117 22 6 -0.5769 -4.3711 3.7667 23 8 -1.5353 -4.9652 4.6893 24 6 -0.9662 -5.1106 5.8912 25 8 -1.5477 -5.5844 6.8472 26 7 0.3040 -4.6870 5.9442 27 6 2.0719 -2.8935 2.4823 28 6 1.5311 -2.1646 1.2481 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 3.1301 1.4424 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6768 1.9563 0.8899 35 1 3.1300 -0.7218 -1.2490 36 1 1.6766 -1.7489 -1.2492 37 1 0.9943 0.7582 -2.3565 38 1 1.4151 0.1639 -6.8100 39 1 3.1300 -0.7207 1.2491 40 1 0.4400 -0.0216 2.5119 41 1 1.8732 1.0348 2.4871 42 1 3.1555 -0.6042 3.7816 43 1 1.6317 -0.2558 4.6383 44 1 -0.9426 -3.4116 3.4012 45 1 -0.3776 -5.0470 2.9351 46 1 0.8751 -4.7132 6.7278 47 1 1.6339 -3.8900 2.5393 48 1 3.1569 -2.9723 2.4138 49 1 0.4413 -2.1661 1.2732 50 1 1.8754 -2.6711 0.3464 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001101536693.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:24 Heat of formation + Delta-G solvation = -90.411157 kcal Electronic energy + Delta-G solvation = -31052.191141 eV Core-core repulsion = 26887.193928 eV Total energy + Delta-G solvation = -4164.997213 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.32995 -40.59778 -39.05080 -37.52851 -36.58024 -35.18758 -34.03298 -32.11992 -31.58477 -30.67744 -29.83710 -27.17608 -26.38498 -26.02617 -24.64628 -23.29587 -22.85042 -22.42076 -21.32874 -19.75973 -18.77082 -18.53146 -18.26661 -17.57776 -17.30347 -16.83905 -16.04347 -15.74519 -15.06435 -15.06060 -14.80683 -14.64716 -14.51922 -14.39680 -14.15684 -14.10334 -14.03756 -13.54086 -13.34896 -13.07868 -12.84703 -12.75354 -12.52746 -12.05254 -11.93078 -11.80869 -11.47165 -11.38408 -11.34520 -11.13249 -11.07613 -10.97958 -10.87143 -10.77766 -10.41111 -10.30908 -10.22171 -9.86774 -9.72563 -9.59319 -9.11907 -8.93233 -7.25568 -5.81579 -3.16223 1.86028 1.99815 2.27186 2.47744 3.03572 3.31524 3.34121 3.40778 3.45090 3.65888 4.02818 4.28629 4.44684 4.49325 4.53673 4.54129 4.63775 4.72664 4.80785 4.91219 4.99070 5.09125 5.22447 5.27276 5.31519 5.39623 5.50573 5.54584 5.58303 5.64274 5.76383 5.81039 5.83732 5.89700 6.05335 6.09865 6.12532 6.15684 6.25298 6.34800 6.45598 6.53517 6.67182 6.71382 6.73578 6.81765 7.50640 7.63908 7.95086 8.37871 9.17551 9.90104 10.09964 11.37021 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.019553 B = 0.002486 C = 0.002359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.657874 B =11258.493210 C =11868.083315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.069 4.069 3 C -0.140 4.140 4 C 0.167 3.833 5 N -0.753 5.753 6 C -0.242 4.242 7 H 0.089 0.911 8 C 0.004 3.996 9 N -0.934 5.934 10 Si 0.881 3.119 11 H -0.284 1.284 12 H -0.291 1.291 13 H -0.277 1.277 14 C -0.071 4.071 15 C -0.133 4.133 16 C 0.112 3.888 17 N -0.601 5.601 18 C 0.504 3.496 19 O -0.523 6.523 20 C 0.075 3.925 21 H 0.129 0.871 22 C 0.054 3.946 23 O -0.320 6.320 24 C 0.651 3.349 25 O -0.517 6.517 26 N -0.711 5.711 27 C 0.100 3.900 28 C -0.138 4.138 29 H 0.048 0.952 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.054 0.946 33 H 0.058 0.942 34 H 0.049 0.951 35 H 0.024 0.976 36 H 0.028 0.972 37 H 0.361 0.639 38 H 0.259 0.741 39 H 0.074 0.926 40 H 0.071 0.929 41 H 0.081 0.919 42 H 0.071 0.929 43 H 0.091 0.909 44 H 0.112 0.888 45 H 0.124 0.876 46 H 0.440 0.560 47 H 0.081 0.919 48 H 0.079 0.921 49 H 0.073 0.927 50 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.215 -5.608 21.462 22.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.070 4.070 3 C -0.197 4.197 4 C 0.040 3.960 5 N -0.400 5.400 6 C -0.372 4.372 7 H 0.107 0.893 8 C -0.192 4.192 9 N -0.583 5.583 10 Si 0.712 3.288 11 H -0.211 1.211 12 H -0.217 1.217 13 H -0.204 1.204 14 C -0.090 4.090 15 C -0.171 4.171 16 C -0.010 4.010 17 N -0.335 5.335 18 C 0.289 3.711 19 O -0.399 6.399 20 C -0.035 4.035 21 H 0.146 0.854 22 C -0.022 4.022 23 O -0.230 6.230 24 C 0.404 3.596 25 O -0.401 6.401 26 N -0.384 5.384 27 C -0.022 4.022 28 C -0.176 4.176 29 H 0.067 0.933 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.077 0.923 34 H 0.068 0.932 35 H 0.042 0.958 36 H 0.045 0.955 37 H 0.195 0.805 38 H 0.069 0.931 39 H 0.093 0.907 40 H 0.090 0.910 41 H 0.099 0.901 42 H 0.089 0.911 43 H 0.109 0.891 44 H 0.130 0.870 45 H 0.141 0.859 46 H 0.284 0.716 47 H 0.099 0.901 48 H 0.097 0.903 49 H 0.092 0.908 50 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 1.486 -5.714 22.097 22.872 hybrid contribution -0.203 1.260 -0.024 1.276 sum 1.283 -4.454 22.072 22.554 Atomic orbital electron populations 1.21928 0.94800 1.01779 1.01300 1.20753 0.95794 0.95739 0.94684 1.21869 1.01002 0.95525 1.01290 1.20703 0.96257 0.94371 0.84641 1.42771 1.61917 1.33200 1.02088 1.19043 1.26343 1.10101 0.81726 0.89322 1.24659 1.00505 0.98865 0.95130 1.69691 1.49836 1.41953 0.96781 0.86605 0.80916 0.84406 0.76902 1.21105 1.21728 1.20373 1.21082 1.00295 0.93823 0.93835 1.22115 1.01751 0.99840 0.93408 1.21725 1.00126 0.79281 0.99882 1.48166 1.56418 1.11523 1.17416 1.20507 0.78444 0.88779 0.83400 1.90770 1.53167 1.64692 1.31237 1.22355 1.00629 0.94566 0.85992 0.85358 1.24313 0.84380 1.01722 0.91775 1.87325 1.38488 1.76416 1.20797 1.18428 0.80825 0.77534 0.82835 1.91101 1.66120 1.49016 1.33840 1.45671 1.14172 1.65334 1.13174 1.21989 1.01209 0.94655 0.84381 1.22173 1.01830 0.96336 0.97281 0.93335 0.92283 0.92544 0.92651 0.92320 0.93189 0.95805 0.95454 0.80499 0.93064 0.90736 0.91034 0.90054 0.91081 0.89069 0.87035 0.85852 0.71591 0.90115 0.90286 0.90830 0.89073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.77 7.60 37.16 0.28 -1.49 16 2 C -0.07 -0.85 0.33 -154.51 -0.05 -0.90 16 3 C -0.14 -1.76 7.95 37.16 0.30 -1.47 16 4 C 0.17 2.77 4.80 -4.04 -0.02 2.75 16 5 N -0.75 -16.48 4.81 -59.91 -0.29 -16.77 16 6 C -0.24 -6.53 10.47 -15.06 -0.16 -6.68 16 7 H 0.09 2.56 8.06 -52.49 -0.42 2.14 16 8 C 0.00 0.12 5.50 -17.43 -0.10 0.02 16 9 N -0.93 -28.64 13.97 55.49 0.78 -27.87 16 10 Si 0.88 21.44 27.74 -169.99 -4.71 16.73 16 11 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 12 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 13 H -0.28 -6.29 6.52 56.52 0.37 -5.92 16 14 C -0.07 -0.61 1.51 -90.58 -0.14 -0.75 16 15 C -0.13 -1.03 4.65 -26.61 -0.12 -1.16 16 16 C 0.11 0.81 6.43 -3.71 -0.02 0.79 16 17 N -0.60 -3.93 2.97 -172.77 -0.51 -4.45 16 18 C 0.50 4.03 6.82 -10.99 -0.08 3.95 16 19 O -0.52 -6.40 15.97 5.55 0.09 -6.31 16 20 C 0.07 0.41 3.15 -68.19 -0.22 0.19 16 21 H 0.13 0.25 7.02 -51.93 -0.36 -0.12 16 22 C 0.05 0.29 7.12 37.73 0.27 0.56 16 23 O -0.32 -3.22 11.09 -37.83 -0.42 -3.64 16 24 C 0.65 7.41 9.16 53.71 0.49 7.90 16 25 O -0.52 -7.94 18.04 -19.12 -0.34 -8.29 16 26 N -0.71 -5.53 5.63 -59.36 -0.33 -5.87 16 27 C 0.10 0.46 6.19 -3.71 -0.02 0.44 16 28 C -0.14 -0.97 4.65 -26.61 -0.12 -1.09 16 29 H 0.05 0.52 6.46 -51.93 -0.34 0.19 16 30 H 0.06 0.91 6.86 -51.93 -0.36 0.55 16 31 H 0.06 0.67 6.46 -51.93 -0.34 0.33 16 32 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.06 0.88 6.86 -51.93 -0.36 0.53 16 34 H 0.05 0.52 6.40 -51.93 -0.33 0.19 16 35 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.03 0.45 6.40 -51.93 -0.33 0.12 16 37 H 0.36 7.81 3.22 -40.82 -0.13 7.68 16 38 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 39 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.07 0.62 6.51 -51.93 -0.34 0.28 16 41 H 0.08 0.62 6.36 -51.93 -0.33 0.29 16 42 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.09 0.80 7.00 -51.93 -0.36 0.43 16 44 H 0.11 0.58 7.72 -51.93 -0.40 0.18 16 45 H 0.12 0.25 8.12 -51.93 -0.42 -0.17 16 46 H 0.44 2.85 8.96 -40.82 -0.37 2.48 16 47 H 0.08 0.17 5.25 -51.93 -0.27 -0.11 16 48 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 49 H 0.07 0.53 6.51 -51.93 -0.34 0.20 16 50 H 0.09 0.71 6.36 -51.93 -0.33 0.38 16 LS Contribution 376.84 15.07 5.68 5.68 Total: -1.00 -36.54 376.84 -7.19 -43.73 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: -7.41 Total: 3.98 kcal Atomic # 6 Polarization: 2.77 SS G_CDS: 0.29 Total: 3.07 kcal Atomic # 7 Polarization: -54.59 SS G_CDS: -0.36 Total: -54.95 kcal Atomic # 8 Polarization: -17.56 SS G_CDS: -0.68 Total: -18.24 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -4.71 Total: 16.73 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -36.54 -7.19 -43.73 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101536693.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.677 kcal (2) G-P(sol) polarization free energy of solvation -36.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds