Wall clock time and date at job start Tue Mar 31 2020 22:34:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52993 * 109.47330 * 2 1 4 4 C 1.52999 * 109.46895 * 239.99585 * 2 1 3 5 5 N 1.46498 * 109.47369 * 60.00648 * 4 2 1 6 6 C 1.36935 * 120.00289 * 179.97438 * 5 4 2 7 7 H 1.07994 * 119.99883 * 0.02562 * 6 5 4 8 8 C 1.38810 * 120.00099 * 179.97438 * 6 5 4 9 9 N 1.31619 * 120.00000 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 120.00079 * 179.97438 * 8 6 5 11 11 H 1.48493 * 109.47032 * 0.02562 * 10 8 6 12 12 H 1.48503 * 109.46853 * 120.00419 * 10 8 6 13 13 H 1.48500 * 109.46847 * 240.00229 * 10 8 6 14 14 C 1.53008 * 109.46765 * 120.00018 * 2 1 3 15 15 C 1.53035 * 109.46031 * 299.99676 * 14 2 1 16 16 C 1.53190 * 109.31331 * 178.62980 * 15 14 2 17 17 N 1.46921 * 108.77465 * 54.63279 * 16 15 14 18 18 C 1.34779 * 120.62908 * 126.37229 * 17 16 15 19 19 O 1.21289 * 119.99866 * 359.97438 * 18 17 16 20 20 C 1.50701 * 120.00184 * 180.02562 * 18 17 16 21 21 H 1.09002 * 115.55088 * 34.41183 * 20 18 17 22 22 C 1.53005 * 117.49691 * 248.74253 * 20 18 17 23 23 C 1.52999 * 59.99973 * 252.48494 * 22 20 18 24 24 H 1.08995 * 117.49529 * 107.48826 * 23 22 20 25 25 N 1.46496 * 117.49799 * 252.51088 * 23 22 20 26 26 O 1.21800 * 119.99677 * 188.62428 * 25 23 22 27 27 O 1.21798 * 120.00268 * 8.62270 * 25 23 22 28 28 C 1.46917 * 118.74097 * 306.64287 * 17 16 15 29 29 C 1.52763 * 109.00956 * 53.31008 * 28 17 16 30 30 H 1.08999 * 109.46841 * 300.00530 * 1 2 3 31 31 H 1.09000 * 109.46507 * 59.99896 * 1 2 3 32 32 H 1.09001 * 109.47391 * 180.02562 * 1 2 3 33 33 H 1.09006 * 109.46733 * 180.02562 * 3 2 1 34 34 H 1.09000 * 109.47411 * 299.99551 * 3 2 1 35 35 H 1.08995 * 109.47432 * 60.00414 * 3 2 1 36 36 H 1.09006 * 109.47218 * 180.02562 * 4 2 1 37 37 H 1.09001 * 109.47274 * 300.00284 * 4 2 1 38 38 H 0.96999 * 119.99561 * 359.97438 * 5 4 2 39 39 H 0.96998 * 120.00467 * 179.97438 * 9 8 6 40 40 H 1.09003 * 109.45900 * 59.96941 * 14 2 1 41 41 H 1.09004 * 109.49918 * 58.67530 * 15 14 2 42 42 H 1.09001 * 109.52573 * 298.60022 * 15 14 2 43 43 H 1.09002 * 109.58719 * 294.84751 * 16 15 14 44 44 H 1.08999 * 109.70174 * 174.49426 * 16 15 14 45 45 H 1.09004 * 117.49602 * 359.97438 * 22 20 18 46 46 H 1.09004 * 117.49360 * 144.99546 * 22 20 18 47 47 H 1.09002 * 109.58747 * 173.14467 * 28 17 16 48 48 H 1.08995 * 109.59007 * 293.57042 * 28 17 16 49 49 H 1.08998 * 109.56781 * 185.54989 * 29 28 17 50 50 H 1.09008 * 109.38324 * 65.51119 * 29 28 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 1.5518 -0.0308 -2.4454 6 6 1.8830 -0.4984 -3.6891 7 1 2.5038 -1.3765 -3.7881 8 6 1.4199 0.1557 -4.8225 9 7 0.6629 1.2256 -4.7018 10 14 1.8724 -0.4818 -6.5191 11 1 2.7267 -1.6886 -6.3828 12 1 0.6354 -0.8328 -7.2620 13 1 2.6140 0.5692 -7.2612 14 6 2.0400 -0.7213 1.2493 15 6 1.5297 0.0004 2.4987 16 6 2.0137 -0.7441 3.7470 17 7 3.4754 -0.8768 3.6814 18 6 4.2495 -0.4572 4.7019 19 8 3.7404 0.0359 5.6862 20 6 5.7475 -0.5996 4.6194 21 1 6.1774 -0.4768 3.6253 22 6 6.4140 -1.6077 5.5578 23 6 6.5711 -0.1071 5.8111 24 1 6.0295 0.3203 6.6549 25 7 7.8771 0.4935 5.5286 26 8 8.1026 1.6439 5.8590 27 8 8.7375 -0.1576 4.9635 28 6 4.0778 -1.4700 2.4798 29 6 3.5703 -0.7225 1.2480 30 1 -0.3633 0.5139 0.8899 31 1 -0.3632 0.5139 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 3.1301 1.4423 -0.0005 34 1 1.6768 1.9563 -0.8900 35 1 1.6769 1.9563 0.8900 36 1 3.1300 -0.7218 -1.2490 37 1 1.6766 -1.7490 -1.2492 38 1 0.9939 0.7577 -2.3564 39 1 0.3397 1.6829 -5.4938 40 1 1.6760 -1.7488 1.2494 41 1 0.4400 0.0213 2.4872 42 1 1.9130 1.0207 2.5121 43 1 1.5582 -1.7338 3.7818 44 1 1.7373 -0.1831 4.6397 45 1 5.7689 -2.1676 6.2350 46 1 7.2824 -2.1482 5.1809 47 1 5.1631 -1.3856 2.5354 48 1 3.7940 -2.5200 2.4092 49 1 3.9331 -1.2160 0.3464 50 1 3.9349 0.3045 1.2724 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001101540847.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:17 Heat of formation + Delta-G solvation = -9.498257 kcal Electronic energy + Delta-G solvation = -30404.092510 eV Core-core repulsion = 26242.603943 eV Total energy + Delta-G solvation = -4161.488566 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -42.71682 -40.97158 -39.29666 -37.41784 -36.70458 -36.32775 -33.88056 -31.83426 -31.49957 -30.01875 -28.36260 -26.97863 -26.15632 -25.92846 -24.50813 -23.18504 -22.65977 -22.57702 -21.08289 -19.76179 -19.37373 -18.87324 -18.19508 -17.77717 -17.49497 -17.06538 -16.52409 -15.87618 -14.98727 -14.84103 -14.76244 -14.34162 -14.21027 -14.17910 -13.85831 -13.60825 -13.17926 -13.13556 -12.88486 -12.69957 -12.48660 -12.14074 -11.99065 -11.88368 -11.84394 -11.75740 -11.61401 -11.44831 -11.43330 -11.27362 -11.03052 -10.93975 -10.87857 -10.77970 -10.48911 -10.28041 -10.16408 -10.08404 -9.74487 -9.59653 -9.07445 -8.88369 -6.91653 -5.78886 -3.06481 0.02438 1.08404 1.72228 2.36013 2.61546 3.17980 3.40961 3.46598 3.48843 3.49761 3.70763 3.98268 4.40912 4.52072 4.55047 4.63514 4.68020 4.76384 4.81385 4.88692 5.00411 5.07507 5.20113 5.35955 5.40149 5.44438 5.50041 5.58220 5.64359 5.76270 5.82562 5.90463 5.91238 5.97173 6.03397 6.08311 6.20143 6.25970 6.30725 6.31505 6.52737 6.66549 6.69841 6.83520 6.89470 6.92124 7.21110 7.52259 7.67949 8.40821 9.52004 10.11360 10.45375 11.44230 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.015542 B = 0.002319 C = 0.002140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1801.175879 B =12071.699602 C =13079.105738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.065 4.065 3 C -0.139 4.139 4 C 0.163 3.837 5 N -0.729 5.729 6 C -0.237 4.237 7 H 0.069 0.931 8 C -0.015 4.015 9 N -0.934 5.934 10 Si 0.905 3.095 11 H -0.281 1.281 12 H -0.292 1.292 13 H -0.292 1.292 14 C -0.072 4.072 15 C -0.133 4.133 16 C 0.111 3.889 17 N -0.594 5.594 18 C 0.545 3.455 19 O -0.537 6.537 20 C -0.148 4.148 21 H 0.149 0.851 22 C -0.106 4.106 23 C -0.062 4.062 24 H 0.185 0.815 25 N 0.010 4.990 26 O -0.150 6.150 27 O -0.160 6.160 28 C 0.102 3.898 29 C -0.138 4.138 30 H 0.046 0.954 31 H 0.067 0.933 32 H 0.049 0.951 33 H 0.050 0.950 34 H 0.066 0.934 35 H 0.044 0.956 36 H 0.019 0.981 37 H 0.015 0.985 38 H 0.384 0.616 39 H 0.254 0.746 40 H 0.072 0.928 41 H 0.082 0.918 42 H 0.071 0.929 43 H 0.071 0.929 44 H 0.092 0.908 45 H 0.134 0.866 46 H 0.141 0.859 47 H 0.083 0.917 48 H 0.077 0.923 49 H 0.089 0.911 50 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.411 -7.103 22.672 24.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.065 4.065 3 C -0.196 4.196 4 C 0.035 3.965 5 N -0.374 5.374 6 C -0.368 4.368 7 H 0.087 0.913 8 C -0.211 4.211 9 N -0.583 5.583 10 Si 0.737 3.263 11 H -0.206 1.206 12 H -0.219 1.219 13 H -0.219 1.219 14 C -0.091 4.091 15 C -0.171 4.171 16 C -0.010 4.010 17 N -0.326 5.326 18 C 0.331 3.669 19 O -0.415 6.415 20 C -0.170 4.170 21 H 0.167 0.833 22 C -0.143 4.143 23 C -0.162 4.162 24 H 0.202 0.798 25 N 0.532 4.468 26 O -0.369 6.369 27 O -0.378 6.378 28 C -0.020 4.020 29 C -0.176 4.176 30 H 0.065 0.935 31 H 0.086 0.914 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.085 0.915 35 H 0.063 0.937 36 H 0.037 0.963 37 H 0.033 0.967 38 H 0.220 0.780 39 H 0.064 0.936 40 H 0.090 0.910 41 H 0.101 0.899 42 H 0.090 0.910 43 H 0.090 0.910 44 H 0.110 0.890 45 H 0.152 0.848 46 H 0.159 0.841 47 H 0.101 0.899 48 H 0.096 0.904 49 H 0.107 0.893 50 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 6.507 -7.271 23.195 25.164 hybrid contribution 0.285 0.174 -1.217 1.263 sum 6.792 -7.097 21.977 24.073 Atomic orbital electron populations 1.21853 0.94567 1.01474 1.01611 1.20688 0.95794 0.95772 0.94246 1.21893 1.00588 0.95580 1.01513 1.20721 0.95878 0.94115 0.85752 1.42433 1.61313 1.33389 1.00312 1.19260 1.25381 1.08506 0.83673 0.91298 1.24722 1.00578 0.97993 0.97774 1.69659 1.39471 1.20935 1.28211 0.86141 0.77515 0.77856 0.84829 1.20616 1.21930 1.21906 1.21098 0.94243 0.99586 0.94137 1.22112 1.01662 1.00004 0.93315 1.21765 0.77874 1.01289 1.00078 1.48014 1.07534 1.60009 1.17037 1.19074 0.86399 0.78243 0.83139 1.90748 1.74484 1.44615 1.31619 1.22857 0.93742 1.03773 0.96614 0.83317 1.23666 1.03153 0.88057 0.99470 1.24995 0.85352 1.00844 1.04987 0.79755 1.43777 1.03458 1.00990 0.98553 1.94603 1.86344 1.01637 1.54341 1.94554 1.40684 1.61917 1.40604 1.21906 0.98066 0.97873 0.84190 1.22087 0.96707 1.01641 0.97170 0.93532 0.91446 0.93154 0.93050 0.91549 0.93657 0.96330 0.96721 0.78047 0.93593 0.90988 0.89924 0.91009 0.91042 0.88994 0.84772 0.84134 0.89901 0.90449 0.89250 0.90953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.02 7.95 37.16 0.30 -1.72 16 2 C -0.06 -0.92 0.33 -154.51 -0.05 -0.97 16 3 C -0.14 -2.06 7.60 37.15 0.28 -1.78 16 4 C 0.16 3.01 4.80 -4.04 -0.02 2.99 16 5 N -0.73 -17.58 5.00 -59.91 -0.30 -17.88 16 6 C -0.24 -6.46 9.99 -15.06 -0.15 -6.61 16 7 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 8 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 9 N -0.93 -27.81 13.06 55.49 0.72 -27.08 16 10 Si 0.91 22.13 29.55 -169.99 -5.02 17.10 16 11 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 12 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 13 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 14 C -0.07 -0.76 1.51 -90.58 -0.14 -0.90 16 15 C -0.13 -1.27 4.65 -26.61 -0.12 -1.39 16 16 C 0.11 0.96 6.43 -3.71 -0.02 0.94 16 17 N -0.59 -5.00 2.98 -173.04 -0.52 -5.51 16 18 C 0.55 5.04 7.48 -10.98 -0.08 4.96 16 19 O -0.54 -6.65 15.67 5.55 0.09 -6.56 16 20 C -0.15 -1.00 5.02 -91.77 -0.46 -1.46 16 21 H 0.15 0.89 6.56 -51.93 -0.34 0.54 16 22 C -0.11 -0.48 9.72 -26.73 -0.26 -0.74 16 23 C -0.06 -0.47 6.43 -67.93 -0.44 -0.90 16 24 H 0.19 1.38 7.67 -51.93 -0.40 0.98 16 25 N 0.01 0.10 4.33 -4.89 -0.02 0.08 16 26 O -0.15 -1.81 19.24 -29.46 -0.57 -2.38 16 27 O -0.16 -1.70 18.28 -29.46 -0.54 -2.24 16 28 C 0.10 0.72 6.32 -3.94 -0.02 0.69 16 29 C -0.14 -1.32 4.63 -26.83 -0.12 -1.44 16 30 H 0.05 0.57 6.40 -51.93 -0.33 0.24 16 31 H 0.07 1.20 6.86 -51.93 -0.36 0.84 16 32 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.05 0.75 6.46 -51.93 -0.34 0.41 16 34 H 0.07 1.19 6.86 -51.93 -0.36 0.84 16 35 H 0.04 0.59 6.46 -51.93 -0.34 0.25 16 36 H 0.02 0.35 6.40 -51.93 -0.33 0.02 16 37 H 0.02 0.28 8.14 -51.93 -0.42 -0.14 16 38 H 0.38 9.76 5.36 -40.82 -0.22 9.54 16 39 H 0.25 7.33 8.31 -40.82 -0.34 7.00 16 40 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.08 0.76 6.36 -51.93 -0.33 0.43 16 42 H 0.07 0.77 6.51 -51.93 -0.34 0.43 16 43 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 44 H 0.09 0.89 7.00 -51.93 -0.36 0.52 16 45 H 0.13 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.14 0.47 7.63 -51.93 -0.40 0.08 16 47 H 0.08 0.44 5.51 -51.93 -0.29 0.16 16 48 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 49 H 0.09 0.92 6.36 -51.93 -0.33 0.59 16 50 H 0.07 0.76 6.51 -51.92 -0.34 0.42 16 LS Contribution 387.69 15.07 5.84 5.84 Total: -1.00 -32.75 387.69 -9.19 -41.94 By element: Atomic # 1 Polarization: 13.01 SS G_CDS: -7.47 Total: 5.54 kcal Atomic # 6 Polarization: -7.44 SS G_CDS: -1.41 Total: -8.85 kcal Atomic # 7 Polarization: -50.28 SS G_CDS: -0.11 Total: -50.39 kcal Atomic # 8 Polarization: -10.17 SS G_CDS: -1.02 Total: -11.18 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -32.75 -9.19 -41.94 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101540847.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.442 kcal (2) G-P(sol) polarization free energy of solvation -32.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds