Wall clock time and date at job start Tue Mar 31 2020 22:33:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52993 * 109.47330 * 2 1 4 4 C 1.52999 * 109.46895 * 239.99585 * 2 1 3 5 5 N 1.46498 * 109.47369 * 60.00648 * 4 2 1 6 6 C 1.36935 * 120.00289 * 179.97438 * 5 4 2 7 7 H 1.07994 * 119.99883 * 0.02562 * 6 5 4 8 8 C 1.38810 * 120.00099 * 179.97438 * 6 5 4 9 9 N 1.31619 * 120.00000 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 120.00079 * 179.97438 * 8 6 5 11 11 H 1.48493 * 109.47032 * 0.02562 * 10 8 6 12 12 H 1.48503 * 109.46853 * 120.00419 * 10 8 6 13 13 H 1.48500 * 109.46847 * 240.00229 * 10 8 6 14 14 C 1.53008 * 109.46765 * 120.00018 * 2 1 3 15 15 C 1.53035 * 109.46031 * 299.99676 * 14 2 1 16 16 C 1.53190 * 109.31331 * 178.62980 * 15 14 2 17 17 N 1.46921 * 108.77465 * 54.63279 * 16 15 14 18 18 C 1.34779 * 120.62908 * 126.37229 * 17 16 15 19 19 O 1.21289 * 119.99866 * 359.97438 * 18 17 16 20 20 C 1.50701 * 120.00184 * 180.02562 * 18 17 16 21 21 H 1.09002 * 115.55088 * 34.41183 * 20 18 17 22 22 C 1.53005 * 117.49691 * 248.74253 * 20 18 17 23 23 C 1.52999 * 59.99973 * 252.48494 * 22 20 18 24 24 H 1.08995 * 117.49529 * 107.48826 * 23 22 20 25 25 N 1.46496 * 117.49799 * 252.51088 * 23 22 20 26 26 O 1.21800 * 119.99677 * 188.62428 * 25 23 22 27 27 O 1.21798 * 120.00268 * 8.62270 * 25 23 22 28 28 C 1.46917 * 118.74097 * 306.64287 * 17 16 15 29 29 C 1.52763 * 109.00956 * 53.31008 * 28 17 16 30 30 H 1.08999 * 109.46841 * 300.00530 * 1 2 3 31 31 H 1.09000 * 109.46507 * 59.99896 * 1 2 3 32 32 H 1.09001 * 109.47391 * 180.02562 * 1 2 3 33 33 H 1.09006 * 109.46733 * 180.02562 * 3 2 1 34 34 H 1.09000 * 109.47411 * 299.99551 * 3 2 1 35 35 H 1.08995 * 109.47432 * 60.00414 * 3 2 1 36 36 H 1.09006 * 109.47218 * 180.02562 * 4 2 1 37 37 H 1.09001 * 109.47274 * 300.00284 * 4 2 1 38 38 H 0.96999 * 119.99561 * 359.97438 * 5 4 2 39 39 H 0.96998 * 120.00467 * 179.97438 * 9 8 6 40 40 H 1.09003 * 109.45900 * 59.96941 * 14 2 1 41 41 H 1.09004 * 109.49918 * 58.67530 * 15 14 2 42 42 H 1.09001 * 109.52573 * 298.60022 * 15 14 2 43 43 H 1.09002 * 109.58719 * 294.84751 * 16 15 14 44 44 H 1.08999 * 109.70174 * 174.49426 * 16 15 14 45 45 H 1.09004 * 117.49602 * 359.97438 * 22 20 18 46 46 H 1.09004 * 117.49360 * 144.99546 * 22 20 18 47 47 H 1.09002 * 109.58747 * 173.14467 * 28 17 16 48 48 H 1.08995 * 109.59007 * 293.57042 * 28 17 16 49 49 H 1.08998 * 109.56781 * 185.54989 * 29 28 17 50 50 H 1.09008 * 109.38324 * 65.51119 * 29 28 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 1.5518 -0.0308 -2.4454 6 6 1.8830 -0.4984 -3.6891 7 1 2.5038 -1.3765 -3.7881 8 6 1.4199 0.1557 -4.8225 9 7 0.6629 1.2256 -4.7018 10 14 1.8724 -0.4818 -6.5191 11 1 2.7267 -1.6886 -6.3828 12 1 0.6354 -0.8328 -7.2620 13 1 2.6140 0.5692 -7.2612 14 6 2.0400 -0.7213 1.2493 15 6 1.5297 0.0004 2.4987 16 6 2.0137 -0.7441 3.7470 17 7 3.4754 -0.8768 3.6814 18 6 4.2495 -0.4572 4.7019 19 8 3.7404 0.0359 5.6862 20 6 5.7475 -0.5996 4.6194 21 1 6.1774 -0.4768 3.6253 22 6 6.4140 -1.6077 5.5578 23 6 6.5711 -0.1071 5.8111 24 1 6.0295 0.3203 6.6549 25 7 7.8771 0.4935 5.5286 26 8 8.1026 1.6439 5.8590 27 8 8.7375 -0.1576 4.9635 28 6 4.0778 -1.4700 2.4798 29 6 3.5703 -0.7225 1.2480 30 1 -0.3633 0.5139 0.8899 31 1 -0.3632 0.5139 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 3.1301 1.4423 -0.0005 34 1 1.6768 1.9563 -0.8900 35 1 1.6769 1.9563 0.8900 36 1 3.1300 -0.7218 -1.2490 37 1 1.6766 -1.7490 -1.2492 38 1 0.9939 0.7577 -2.3564 39 1 0.3397 1.6829 -5.4938 40 1 1.6760 -1.7488 1.2494 41 1 0.4400 0.0213 2.4872 42 1 1.9130 1.0207 2.5121 43 1 1.5582 -1.7338 3.7818 44 1 1.7373 -0.1831 4.6397 45 1 5.7689 -2.1676 6.2350 46 1 7.2824 -2.1482 5.1809 47 1 5.1631 -1.3856 2.5354 48 1 3.7940 -2.5200 2.4092 49 1 3.9331 -1.2160 0.3464 50 1 3.9349 0.3045 1.2724 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. SCF OSCILLATION -- NSTAR INDEX INCREASED BY ONE SCF OSCILLATION -- NSTAR INDEX INCREASED BY ONE CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001101540847.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:41 Heat of formation + Delta-G solvation = -28.726704 kcal Electronic energy + Delta-G solvation = -30404.926318 eV Core-core repulsion = 26242.603943 eV Total energy + Delta-G solvation = -4162.322374 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 35.95 seconds Orbital eigenvalues (eV) -43.44247 -41.70081 -40.23883 -38.13550 -37.57827 -37.20130 -35.54602 -33.16295 -32.28182 -31.57724 -29.08643 -28.19450 -27.52237 -26.86869 -25.58260 -24.22202 -23.75079 -23.30876 -21.98022 -20.42786 -20.12432 -19.59464 -19.50003 -18.96963 -18.48261 -18.01933 -17.22222 -16.65910 -16.58081 -16.10272 -15.52804 -15.46480 -15.29538 -15.16705 -14.96727 -14.59740 -14.39909 -14.12141 -13.90106 -13.72087 -13.32628 -13.12319 -13.09503 -12.85760 -12.79618 -12.77517 -12.65882 -12.63676 -12.47683 -12.29738 -12.21259 -12.13138 -12.07379 -11.96413 -11.89009 -11.76086 -11.30899 -11.26668 -10.95631 -10.94336 -10.81960 -9.77774 -8.92550 -7.93242 -5.19764 -0.77899 0.42956 1.09985 1.47322 1.47557 1.57492 1.73795 2.07990 2.57200 2.62324 3.02212 3.15026 3.40864 3.48353 3.67674 3.73460 3.79162 3.99259 4.10600 4.16545 4.26523 4.28083 4.35976 4.38187 4.44368 4.48900 4.54703 4.59470 4.78595 4.81846 4.84909 4.89381 4.94408 4.98645 5.02643 5.07075 5.14470 5.15217 5.23671 5.26340 5.31583 5.37910 5.47515 5.52563 5.64144 5.67584 6.18635 6.30243 6.36960 6.85245 7.36592 8.17038 8.38006 9.30877 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.015542 B = 0.002319 C = 0.002140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1801.175879 B =12071.699602 C =13079.105738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.056 4.056 3 C -0.132 4.132 4 C 0.160 3.840 5 N -0.742 5.742 6 C -0.237 4.237 7 H 0.075 0.925 8 C -0.079 4.079 9 N -0.972 5.972 10 Si 0.969 3.031 11 H -0.265 1.265 12 H -0.296 1.296 13 H -0.296 1.296 14 C -0.063 4.063 15 C -0.126 4.126 16 C 0.114 3.886 17 N -0.592 5.592 18 C 0.543 3.457 19 O -0.574 6.574 20 C -0.147 4.147 21 H 0.162 0.838 22 C -0.071 4.071 23 C -0.080 4.080 24 H 0.180 0.820 25 N 0.015 4.985 26 O -0.210 6.210 27 O -0.141 6.141 28 C 0.105 3.895 29 C -0.138 4.138 30 H 0.071 0.929 31 H 0.028 0.972 32 H 0.055 0.945 33 H 0.052 0.948 34 H 0.027 0.973 35 H 0.064 0.936 36 H 0.025 0.975 37 H 0.016 0.984 38 H 0.375 0.625 39 H 0.249 0.751 40 H 0.084 0.916 41 H 0.088 0.912 42 H 0.058 0.942 43 H 0.091 0.909 44 H 0.080 0.920 45 H 0.154 0.846 46 H 0.162 0.838 47 H 0.105 0.895 48 H 0.098 0.902 49 H 0.084 0.916 50 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.424 -9.953 23.716 27.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.056 4.056 3 C -0.189 4.189 4 C 0.034 3.966 5 N -0.386 5.386 6 C -0.369 4.369 7 H 0.093 0.907 8 C -0.271 4.271 9 N -0.623 5.623 10 Si 0.799 3.201 11 H -0.189 1.189 12 H -0.223 1.223 13 H -0.224 1.224 14 C -0.082 4.082 15 C -0.164 4.164 16 C -0.008 4.008 17 N -0.323 5.323 18 C 0.331 3.669 19 O -0.455 6.455 20 C -0.169 4.169 21 H 0.179 0.821 22 C -0.108 4.108 23 C -0.180 4.180 24 H 0.197 0.803 25 N 0.534 4.466 26 O -0.417 6.417 27 O -0.368 6.368 28 C -0.016 4.016 29 C -0.176 4.176 30 H 0.090 0.910 31 H 0.047 0.953 32 H 0.074 0.926 33 H 0.071 0.929 34 H 0.047 0.953 35 H 0.082 0.918 36 H 0.042 0.958 37 H 0.034 0.966 38 H 0.208 0.792 39 H 0.058 0.942 40 H 0.102 0.898 41 H 0.107 0.893 42 H 0.077 0.923 43 H 0.109 0.891 44 H 0.099 0.901 45 H 0.171 0.829 46 H 0.180 0.820 47 H 0.123 0.877 48 H 0.116 0.884 49 H 0.102 0.898 50 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 7.526 -10.061 24.299 27.355 hybrid contribution -0.039 0.954 -1.535 1.808 sum 7.487 -9.107 22.763 25.635 Atomic orbital electron populations 1.21807 0.94805 1.01574 1.00930 1.20602 0.95516 0.95243 0.94244 1.21817 1.00619 0.95965 1.00504 1.20925 0.96031 0.94022 0.85586 1.42674 1.61212 1.33415 1.01253 1.19677 1.24118 1.08050 0.85033 0.90684 1.25519 1.01456 0.98682 1.01440 1.69820 1.41300 1.22516 1.28679 0.85119 0.77047 0.77580 0.80330 1.18889 1.22294 1.22360 1.21015 0.95147 0.99661 0.92357 1.22029 1.01984 0.99225 0.93173 1.21725 0.78278 1.01968 0.98814 1.48085 1.07458 1.59547 1.17199 1.19411 0.87351 0.77461 0.82687 1.90740 1.75356 1.46249 1.33118 1.22877 0.92012 1.04954 0.97061 0.82103 1.23968 1.03108 0.86035 0.97715 1.25114 0.84143 1.03254 1.05473 0.80307 1.44116 1.04161 1.00582 0.97749 1.94618 1.87301 1.02913 1.56882 1.94511 1.41439 1.61451 1.39395 1.22003 0.99258 0.98246 0.82097 1.22044 0.95702 1.01396 0.98441 0.91023 0.95277 0.92619 0.92863 0.95346 0.91757 0.95753 0.96576 0.79212 0.94211 0.89760 0.89332 0.92324 0.89113 0.90111 0.82850 0.82042 0.87707 0.88374 0.89793 0.92152 Number of geometries 1 Number of calculations of the screened coulomb radii 6 The total number of SCF iterations 553. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.84 7.95 71.98 0.57 -3.27 16 2 C -0.06 -1.54 0.33 -52.18 -0.02 -1.56 16 3 C -0.13 -3.93 7.60 71.98 0.55 -3.39 16 4 C 0.16 5.83 4.80 86.38 0.41 6.25 16 5 N -0.74 -36.31 5.00 -343.46 -1.72 -38.03 16 6 C -0.24 -12.94 9.99 84.03 0.84 -12.10 16 7 H 0.08 3.93 7.83 -2.91 -0.02 3.90 16 8 C -0.08 -4.51 5.50 84.86 0.47 -4.04 16 9 N -0.97 -59.41 13.06 21.65 0.28 -59.13 16 10 Si 0.97 45.82 29.55 68.60 2.03 47.85 16 11 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 12 H -0.30 -14.02 7.11 99.48 0.71 -13.31 16 13 H -0.30 -14.09 7.11 99.48 0.71 -13.38 16 14 C -0.06 -1.18 1.51 -10.77 -0.02 -1.20 16 15 C -0.13 -2.11 4.65 30.67 0.14 -1.96 16 16 C 0.11 1.66 6.43 86.36 0.56 2.22 16 17 N -0.59 -8.16 2.98 -819.76 -2.44 -10.60 16 18 C 0.54 8.76 7.48 87.66 0.66 9.42 16 19 O -0.57 -13.53 15.67 -3.06 -0.05 -13.58 16 20 C -0.15 -1.56 5.02 -11.54 -0.06 -1.62 16 21 H 0.16 1.33 6.56 -2.39 -0.02 1.32 16 22 C -0.07 -0.37 9.72 30.60 0.30 -0.07 16 23 C -0.08 -1.07 6.43 44.99 0.29 -0.78 16 24 H 0.18 2.60 7.67 -2.39 -0.02 2.58 16 25 N 0.02 0.30 4.33 -169.40 -0.73 -0.43 16 26 O -0.21 -5.29 19.24 18.89 0.36 -4.93 16 27 O -0.14 -2.71 18.28 18.89 0.35 -2.36 16 28 C 0.11 1.08 6.32 86.22 0.54 1.62 16 29 C -0.14 -2.27 4.63 30.53 0.14 -2.13 16 30 H 0.07 1.67 6.40 -2.39 -0.02 1.65 16 31 H 0.03 1.05 6.86 -2.39 -0.02 1.03 16 32 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.05 1.54 6.46 -2.38 -0.02 1.52 16 34 H 0.03 1.05 6.86 -2.39 -0.02 1.03 16 35 H 0.06 1.64 6.46 -2.39 -0.02 1.63 16 36 H 0.02 0.88 6.40 -2.38 -0.02 0.86 16 37 H 0.02 0.60 8.14 -2.39 -0.02 0.58 16 38 H 0.37 19.74 5.36 -92.71 -0.50 19.25 16 39 H 0.25 14.79 8.31 -92.71 -0.77 14.02 16 40 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 41 H 0.09 1.39 6.36 -2.38 -0.02 1.37 16 42 H 0.06 1.15 6.51 -2.39 -0.02 1.14 16 43 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 44 H 0.08 1.42 7.00 -2.39 -0.02 1.40 16 45 H 0.15 0.30 8.14 -2.39 -0.02 0.28 16 46 H 0.16 0.27 7.63 -2.38 -0.02 0.25 16 47 H 0.10 0.65 5.51 -2.39 -0.01 0.64 16 48 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 49 H 0.08 1.51 6.36 -2.39 -0.02 1.49 16 50 H 0.06 1.15 6.51 -2.38 -0.02 1.14 16 Total: -1.00 -73.68 387.69 3.93 -69.75 By element: Atomic # 1 Polarization: 23.59 SS G_CDS: 0.48 Total: 24.06 kcal Atomic # 6 Polarization: -17.98 SS G_CDS: 5.38 Total: -12.60 kcal Atomic # 7 Polarization: -103.58 SS G_CDS: -4.61 Total: -108.19 kcal Atomic # 8 Polarization: -21.53 SS G_CDS: 0.66 Total: -20.87 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 2.03 Total: 47.85 kcal Total: -73.68 3.93 -69.75 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101540847.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.027 kcal (2) G-P(sol) polarization free energy of solvation -73.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 35.95 seconds