Wall clock time and date at job start Tue Mar 31 2020 23:13:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.50704 * 119.99804 * 2 1 4 4 C 1.32990 * 120.00499 * 180.02562 * 2 1 3 5 5 C 1.47102 * 119.99531 * 352.54536 * 4 2 1 6 6 O 1.21607 * 120.00136 * 359.67927 * 5 4 2 7 7 N 1.34780 * 119.99447 * 179.67571 * 5 4 2 8 8 C 1.46506 * 119.99783 * 179.97438 * 7 5 4 9 9 C 1.53000 * 109.47227 * 180.02562 * 8 7 5 10 10 C 1.52998 * 109.50696 * 59.91144 * 9 8 7 11 11 C 1.53101 * 109.50455 * 180.02562 * 9 8 7 12 12 N 1.47015 * 109.25492 * 176.82724 * 11 9 8 13 13 C 1.46902 * 110.99798 * 177.60986 * 12 11 9 14 14 C 1.50703 * 109.46946 * 190.46329 * 13 12 11 15 15 O 1.21296 * 119.99834 * 6.19704 * 14 13 12 16 16 N 1.34773 * 119.99989 * 186.19965 * 14 13 12 17 17 C 1.37093 * 120.00193 * 180.02562 * 16 14 13 18 18 H 1.08009 * 119.99862 * 359.97438 * 17 16 14 19 19 C 1.38949 * 120.00482 * 179.97438 * 17 16 14 20 20 N 1.31405 * 120.00497 * 179.97438 * 19 17 16 21 21 Si 1.86807 * 119.99716 * 359.97438 * 19 17 16 22 22 H 1.48496 * 109.46741 * 90.00166 * 21 19 17 23 23 H 1.48500 * 109.47014 * 210.00154 * 21 19 17 24 24 H 1.48501 * 109.47176 * 330.00315 * 21 19 17 25 25 C 1.47017 * 110.75299 * 301.37937 * 12 11 9 26 26 C 1.53105 * 109.25296 * 58.61710 * 25 12 11 27 27 O 1.43010 * 109.26029 * 303.14981 * 26 25 12 28 28 H 1.09000 * 109.46906 * 264.56959 * 1 2 3 29 29 H 1.08998 * 109.47454 * 24.56674 * 1 2 3 30 30 H 1.08998 * 109.46815 * 144.57000 * 1 2 3 31 31 H 1.08999 * 109.47458 * 180.02562 * 3 2 1 32 32 H 1.09007 * 109.47340 * 300.00202 * 3 2 1 33 33 H 1.09000 * 109.47193 * 59.99929 * 3 2 1 34 34 H 1.07995 * 120.00485 * 172.53906 * 4 2 1 35 35 H 0.96992 * 120.00825 * 0.02562 * 7 5 4 36 36 H 1.09006 * 109.46874 * 60.00176 * 8 7 5 37 37 H 1.09007 * 109.47206 * 300.00272 * 8 7 5 38 38 H 1.09001 * 109.46766 * 180.08618 * 10 9 8 39 39 H 1.09000 * 109.47301 * 300.08922 * 10 9 8 40 40 H 1.09004 * 109.46829 * 60.09118 * 10 9 8 41 41 H 1.08993 * 109.50794 * 56.88865 * 11 9 8 42 42 H 1.08998 * 109.53989 * 296.77964 * 11 9 8 43 43 H 1.08997 * 109.47093 * 310.45805 * 13 12 11 44 44 H 1.09001 * 109.47597 * 70.46021 * 13 12 11 45 45 H 0.96998 * 119.99848 * 359.97438 * 16 14 13 46 46 H 0.97004 * 120.00362 * 179.97438 * 20 19 17 47 47 H 1.08998 * 109.50856 * 178.55360 * 25 12 11 48 48 H 1.08999 * 109.51032 * 298.68657 * 25 12 11 49 49 H 1.09003 * 109.50465 * 63.08910 * 26 25 12 50 50 H 1.09006 * 109.50377 * 183.21483 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3052 0.0000 4 6 2.1720 -1.1517 -0.0005 5 6 1.4459 -2.4203 0.1642 6 8 0.2382 -2.4156 0.3067 7 7 2.1191 -3.5879 0.1571 8 6 1.3960 -4.8514 0.3217 9 6 2.3874 -6.0159 0.2774 10 6 3.4089 -5.8605 1.4058 11 6 1.6324 -7.3367 0.4487 12 7 2.5790 -8.4552 0.3293 13 6 1.9034 -9.7419 0.5442 14 6 2.9331 -10.8350 0.6702 15 8 4.1131 -10.5559 0.7018 16 7 2.5428 -12.1227 0.7477 17 6 3.4795 -13.1171 0.8628 18 1 4.5302 -12.8686 0.8910 19 6 3.0772 -14.4447 0.9433 20 7 3.9750 -15.3979 1.0531 21 14 1.2598 -14.8744 0.8952 22 1 0.8396 -15.0913 -0.5124 23 1 1.0233 -16.1133 1.6791 24 1 0.4720 -13.7600 1.4808 25 6 3.2564 -8.4274 -0.9753 26 6 3.9950 -7.0955 -1.1323 27 8 3.0648 -6.0197 -0.9822 28 1 -0.3633 -0.0973 1.0231 29 1 -0.3634 0.9346 -0.4272 30 1 -0.3633 -0.8374 -0.5957 31 1 3.3321 1.1061 -0.0005 32 1 1.9971 1.8768 -0.8900 33 1 1.9971 1.8767 0.8900 34 1 3.2451 -1.1556 -0.1220 35 1 3.0824 -3.5917 0.0438 36 1 0.6692 -4.9616 -0.4832 37 1 0.8785 -4.8516 1.2811 38 1 4.1157 -6.6896 1.3727 39 1 3.9459 -4.9200 1.2828 40 1 2.8926 -5.8614 2.3658 41 1 0.8685 -7.4222 -0.3240 42 1 1.1609 -7.3624 1.4311 43 1 1.3115 -9.6932 1.4582 44 1 1.2493 -9.9546 -0.3014 45 1 1.5992 -12.3458 0.7227 46 1 3.6941 -16.3246 1.1097 47 1 3.9707 -9.2487 -1.0321 48 1 2.5184 -8.5303 -1.7709 49 1 4.7692 -7.0165 -0.3691 50 1 4.4513 -7.0468 -2.1210 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001107710323.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:13:42 Heat of formation + Delta-G solvation = -85.783646 kcal Electronic energy + Delta-G solvation = -29778.164510 eV Core-core repulsion = 25613.367961 eV Total energy + Delta-G solvation = -4164.796549 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.53319 -39.71571 -38.36136 -36.16716 -35.45637 -34.86062 -33.91108 -32.41745 -31.71132 -29.47936 -28.74788 -28.06711 -27.74013 -26.30704 -25.00687 -23.76114 -22.32978 -21.13654 -19.57623 -19.41026 -18.99304 -18.30578 -17.27195 -16.78690 -16.19777 -15.89098 -15.76715 -15.28258 -15.21851 -15.00665 -14.75695 -14.49352 -14.28560 -14.09241 -13.97774 -13.71974 -13.58841 -13.19467 -13.08036 -12.78521 -12.72563 -12.61106 -12.45913 -12.17623 -12.05819 -11.94750 -11.88310 -11.80205 -11.57319 -11.30280 -11.27458 -11.03563 -10.62584 -10.39662 -10.01223 -9.77196 -9.68751 -9.56823 -9.53158 -9.07825 -8.61040 -8.21988 -8.07490 -6.34347 -3.85916 1.08432 2.99801 3.00206 3.04360 3.10122 3.13006 3.56804 3.69379 3.78002 4.07367 4.43233 4.49763 4.59007 4.64906 4.71424 4.79385 4.91224 5.05849 5.08423 5.09506 5.16903 5.27019 5.32921 5.34446 5.42351 5.44771 5.48353 5.50371 5.55606 5.56042 5.61616 5.70685 5.75877 5.79035 5.81348 5.88689 6.01974 6.14168 6.17778 6.23480 6.29000 6.32430 6.99734 7.04043 7.17853 7.37810 7.54700 8.09031 8.10594 8.56589 8.91675 9.38937 9.79290 10.78619 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.033118 B = 0.001886 C = 0.001828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.251643 B =14845.746382 C =15314.463626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.033 4.033 3 C -0.127 4.127 4 C -0.235 4.235 5 C 0.544 3.456 6 O -0.546 6.546 7 N -0.717 5.717 8 C 0.139 3.861 9 C 0.110 3.890 10 C -0.170 4.170 11 C 0.032 3.968 12 N -0.508 5.508 13 C 0.043 3.957 14 C 0.452 3.548 15 O -0.559 6.559 16 N -0.590 5.590 17 C -0.305 4.305 18 H 0.120 0.880 19 C 0.042 3.958 20 N -0.880 5.880 21 Si 0.879 3.121 22 H -0.271 1.271 23 H -0.276 1.276 24 H -0.269 1.269 25 C 0.016 3.984 26 C 0.065 3.935 27 O -0.378 6.378 28 H 0.077 0.923 29 H 0.053 0.947 30 H 0.095 0.905 31 H 0.067 0.933 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.125 0.875 35 H 0.405 0.595 36 H 0.073 0.927 37 H 0.082 0.918 38 H 0.083 0.917 39 H 0.054 0.946 40 H 0.066 0.934 41 H 0.043 0.957 42 H 0.087 0.913 43 H 0.092 0.908 44 H 0.049 0.951 45 H 0.370 0.630 46 H 0.274 0.726 47 H 0.109 0.891 48 H 0.034 0.966 49 H 0.066 0.934 50 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.121 28.177 -2.794 28.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.035 4.035 3 C -0.184 4.184 4 C -0.256 4.256 5 C 0.334 3.666 6 O -0.427 6.427 7 N -0.368 5.368 8 C 0.014 3.986 9 C 0.070 3.930 10 C -0.227 4.227 11 C -0.097 4.097 12 N -0.232 5.232 13 C -0.088 4.088 14 C 0.238 3.762 15 O -0.441 6.441 16 N -0.230 5.230 17 C -0.434 4.434 18 H 0.137 0.863 19 C -0.161 4.161 20 N -0.520 5.520 21 Si 0.705 3.295 22 H -0.197 1.197 23 H -0.201 1.201 24 H -0.195 1.195 25 C -0.112 4.112 26 C -0.012 4.012 27 O -0.297 6.297 28 H 0.095 0.905 29 H 0.072 0.928 30 H 0.113 0.887 31 H 0.086 0.914 32 H 0.093 0.907 33 H 0.096 0.904 34 H 0.143 0.857 35 H 0.240 0.760 36 H 0.091 0.909 37 H 0.100 0.900 38 H 0.102 0.898 39 H 0.073 0.927 40 H 0.085 0.915 41 H 0.061 0.939 42 H 0.105 0.895 43 H 0.110 0.890 44 H 0.067 0.933 45 H 0.203 0.797 46 H 0.084 0.916 47 H 0.127 0.873 48 H 0.052 0.948 49 H 0.084 0.916 50 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -5.781 28.283 -2.428 28.970 hybrid contribution -1.446 -1.091 -0.485 1.875 sum -7.227 27.193 -2.913 28.287 Atomic orbital electron populations 1.21203 0.90885 1.02715 1.03663 1.22573 0.96947 0.94447 0.89529 1.21023 0.99900 0.94543 1.02927 1.22379 1.00222 0.91960 1.11023 1.18561 0.87141 0.84221 0.76662 1.90740 1.14202 1.87523 1.50196 1.45773 1.11574 1.05415 1.74045 1.21273 0.93599 0.81131 1.02582 1.21681 0.92520 0.93443 0.85385 1.22290 1.00026 1.02635 0.97774 1.22661 0.94034 0.90786 1.02220 1.61761 1.28516 1.01102 1.31857 1.21920 0.95723 0.89488 1.01708 1.19593 0.89638 0.82829 0.84173 1.90539 1.17779 1.82103 1.53685 1.42221 1.08184 1.05942 1.66631 1.19418 0.91690 0.84580 1.47705 0.86254 1.25032 0.98055 0.95411 0.97579 1.69615 1.33196 1.00339 1.48876 0.86684 0.84874 0.79000 0.78906 1.19661 1.20136 1.19493 1.22912 0.99284 1.00143 0.88824 1.22704 0.91387 0.84908 1.02152 1.87980 1.57188 1.49781 1.34786 0.90498 0.92789 0.88653 0.91361 0.90687 0.90388 0.85685 0.75997 0.90856 0.89962 0.89789 0.92660 0.91511 0.93920 0.89495 0.88961 0.93301 0.79729 0.91587 0.87300 0.94784 0.91574 0.88534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.08 8.52 36.01 0.31 -0.77 16 2 C -0.03 -0.25 6.11 -101.17 -0.62 -0.87 16 3 C -0.13 -0.60 10.10 36.01 0.36 -0.24 16 4 C -0.23 -1.94 9.62 -37.81 -0.36 -2.31 16 5 C 0.54 5.89 7.68 -12.66 -0.10 5.79 16 6 O -0.55 -7.43 13.16 5.27 0.07 -7.36 16 7 N -0.72 -6.91 5.15 -61.48 -0.32 -7.23 16 8 C 0.14 1.43 4.82 -4.04 -0.02 1.41 16 9 C 0.11 1.20 0.76 -90.57 -0.07 1.13 16 10 C -0.17 -1.80 8.00 37.16 0.30 -1.50 16 11 C 0.03 0.38 4.34 -3.71 -0.02 0.37 16 12 N -0.51 -7.68 3.78 -235.74 -0.89 -8.57 16 13 C 0.04 0.70 5.45 -4.97 -0.03 0.67 16 14 C 0.45 9.91 7.36 -10.99 -0.08 9.83 16 15 O -0.56 -14.31 14.29 5.54 0.08 -14.23 16 16 N -0.59 -13.74 5.09 -10.96 -0.06 -13.79 16 17 C -0.31 -8.47 10.16 -14.94 -0.15 -8.63 16 18 H 0.12 3.79 7.39 -52.48 -0.39 3.40 16 19 C 0.04 1.14 5.50 -17.47 -0.10 1.05 16 20 N -0.88 -25.42 13.96 55.50 0.77 -24.65 16 21 Si 0.88 19.15 27.74 -169.99 -4.71 14.43 16 22 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 23 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 24 H -0.27 -5.35 6.52 56.52 0.37 -4.98 16 25 C 0.02 0.24 5.30 -3.71 -0.02 0.22 16 26 C 0.06 0.81 6.61 37.21 0.25 1.06 16 27 O -0.38 -4.59 10.04 -35.23 -0.35 -4.94 16 28 H 0.08 0.69 8.09 -51.93 -0.42 0.27 16 29 H 0.05 0.35 8.09 -51.93 -0.42 -0.07 16 30 H 0.10 1.02 5.96 -51.93 -0.31 0.71 16 31 H 0.07 0.27 7.82 -51.93 -0.41 -0.14 16 32 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.13 0.76 7.88 -52.49 -0.41 0.34 16 35 H 0.40 3.33 7.18 -40.82 -0.29 3.04 16 36 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.08 1.09 6.12 -51.93 -0.32 0.77 16 39 H 0.05 0.50 6.86 -51.93 -0.36 0.14 16 40 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.09 0.93 8.08 -51.93 -0.42 0.51 16 43 H 0.09 1.31 8.03 -51.93 -0.42 0.90 16 44 H 0.05 0.71 8.11 -51.93 -0.42 0.29 16 45 H 0.37 7.60 5.76 -40.82 -0.24 7.36 16 46 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 47 H 0.11 1.96 6.14 -51.93 -0.32 1.64 16 48 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 49 H 0.07 0.85 6.49 -51.93 -0.34 0.51 16 50 H 0.10 1.04 8.14 -51.93 -0.42 0.61 16 LS Contribution 395.71 15.07 5.96 5.96 Total: -1.00 -33.17 395.71 -7.81 -40.98 By element: Atomic # 1 Polarization: 20.21 SS G_CDS: -8.02 Total: 12.19 kcal Atomic # 6 Polarization: 7.56 SS G_CDS: -0.34 Total: 7.21 kcal Atomic # 7 Polarization: -53.75 SS G_CDS: -0.49 Total: -54.24 kcal Atomic # 8 Polarization: -26.33 SS G_CDS: -0.21 Total: -26.54 kcal Atomic # 14 Polarization: 19.15 SS G_CDS: -4.71 Total: 14.43 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -33.17 -7.81 -40.98 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107710323.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.801 kcal (2) G-P(sol) polarization free energy of solvation -33.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds