Wall clock time and date at job start Tue Mar 31 2020 23:13:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.50704 * 119.99804 * 2 1 4 4 C 1.32990 * 120.00499 * 180.02562 * 2 1 3 5 5 C 1.47102 * 119.99531 * 352.54536 * 4 2 1 6 6 O 1.21607 * 120.00136 * 359.67927 * 5 4 2 7 7 N 1.34780 * 119.99447 * 179.67571 * 5 4 2 8 8 C 1.46506 * 119.99783 * 179.97438 * 7 5 4 9 9 C 1.53000 * 109.47227 * 180.02562 * 8 7 5 10 10 C 1.52998 * 109.50696 * 59.91144 * 9 8 7 11 11 C 1.53101 * 109.50455 * 180.02562 * 9 8 7 12 12 N 1.47015 * 109.25492 * 176.82724 * 11 9 8 13 13 C 1.46902 * 110.99798 * 177.60986 * 12 11 9 14 14 C 1.50703 * 109.46946 * 190.46329 * 13 12 11 15 15 O 1.21296 * 119.99834 * 6.19704 * 14 13 12 16 16 N 1.34773 * 119.99989 * 186.19965 * 14 13 12 17 17 C 1.37093 * 120.00193 * 180.02562 * 16 14 13 18 18 H 1.08009 * 119.99862 * 359.97438 * 17 16 14 19 19 C 1.38949 * 120.00482 * 179.97438 * 17 16 14 20 20 N 1.31405 * 120.00497 * 179.97438 * 19 17 16 21 21 Si 1.86807 * 119.99716 * 359.97438 * 19 17 16 22 22 H 1.48496 * 109.46741 * 90.00166 * 21 19 17 23 23 H 1.48500 * 109.47014 * 210.00154 * 21 19 17 24 24 H 1.48501 * 109.47176 * 330.00315 * 21 19 17 25 25 C 1.47017 * 110.75299 * 301.37937 * 12 11 9 26 26 C 1.53105 * 109.25296 * 58.61710 * 25 12 11 27 27 O 1.43010 * 109.26029 * 303.14981 * 26 25 12 28 28 H 1.09000 * 109.46906 * 264.56959 * 1 2 3 29 29 H 1.08998 * 109.47454 * 24.56674 * 1 2 3 30 30 H 1.08998 * 109.46815 * 144.57000 * 1 2 3 31 31 H 1.08999 * 109.47458 * 180.02562 * 3 2 1 32 32 H 1.09007 * 109.47340 * 300.00202 * 3 2 1 33 33 H 1.09000 * 109.47193 * 59.99929 * 3 2 1 34 34 H 1.07995 * 120.00485 * 172.53906 * 4 2 1 35 35 H 0.96992 * 120.00825 * 0.02562 * 7 5 4 36 36 H 1.09006 * 109.46874 * 60.00176 * 8 7 5 37 37 H 1.09007 * 109.47206 * 300.00272 * 8 7 5 38 38 H 1.09001 * 109.46766 * 180.08618 * 10 9 8 39 39 H 1.09000 * 109.47301 * 300.08922 * 10 9 8 40 40 H 1.09004 * 109.46829 * 60.09118 * 10 9 8 41 41 H 1.08993 * 109.50794 * 56.88865 * 11 9 8 42 42 H 1.08998 * 109.53989 * 296.77964 * 11 9 8 43 43 H 1.08997 * 109.47093 * 310.45805 * 13 12 11 44 44 H 1.09001 * 109.47597 * 70.46021 * 13 12 11 45 45 H 0.96998 * 119.99848 * 359.97438 * 16 14 13 46 46 H 0.97004 * 120.00362 * 179.97438 * 20 19 17 47 47 H 1.08998 * 109.50856 * 178.55360 * 25 12 11 48 48 H 1.08999 * 109.51032 * 298.68657 * 25 12 11 49 49 H 1.09003 * 109.50465 * 63.08910 * 26 25 12 50 50 H 1.09006 * 109.50377 * 183.21483 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3052 0.0000 4 6 2.1720 -1.1517 -0.0005 5 6 1.4459 -2.4203 0.1642 6 8 0.2382 -2.4156 0.3067 7 7 2.1191 -3.5879 0.1571 8 6 1.3960 -4.8514 0.3217 9 6 2.3874 -6.0159 0.2774 10 6 3.4089 -5.8605 1.4058 11 6 1.6324 -7.3367 0.4487 12 7 2.5790 -8.4552 0.3293 13 6 1.9034 -9.7419 0.5442 14 6 2.9331 -10.8350 0.6702 15 8 4.1131 -10.5559 0.7018 16 7 2.5428 -12.1227 0.7477 17 6 3.4795 -13.1171 0.8628 18 1 4.5302 -12.8686 0.8910 19 6 3.0772 -14.4447 0.9433 20 7 3.9750 -15.3979 1.0531 21 14 1.2598 -14.8744 0.8952 22 1 0.8396 -15.0913 -0.5124 23 1 1.0233 -16.1133 1.6791 24 1 0.4720 -13.7600 1.4808 25 6 3.2564 -8.4274 -0.9753 26 6 3.9950 -7.0955 -1.1323 27 8 3.0648 -6.0197 -0.9822 28 1 -0.3633 -0.0973 1.0231 29 1 -0.3634 0.9346 -0.4272 30 1 -0.3633 -0.8374 -0.5957 31 1 3.3321 1.1061 -0.0005 32 1 1.9971 1.8768 -0.8900 33 1 1.9971 1.8767 0.8900 34 1 3.2451 -1.1556 -0.1220 35 1 3.0824 -3.5917 0.0438 36 1 0.6692 -4.9616 -0.4832 37 1 0.8785 -4.8516 1.2811 38 1 4.1157 -6.6896 1.3727 39 1 3.9459 -4.9200 1.2828 40 1 2.8926 -5.8614 2.3658 41 1 0.8685 -7.4222 -0.3240 42 1 1.1609 -7.3624 1.4311 43 1 1.3115 -9.6932 1.4582 44 1 1.2493 -9.9546 -0.3014 45 1 1.5992 -12.3458 0.7227 46 1 3.6941 -16.3246 1.1097 47 1 3.9707 -9.2487 -1.0321 48 1 2.5184 -8.5303 -1.7709 49 1 4.7692 -7.0165 -0.3691 50 1 4.4513 -7.0468 -2.1210 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001107710323.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:13:41 Heat of formation + Delta-G solvation = -111.634498 kcal Electronic energy + Delta-G solvation = -29779.285487 eV Core-core repulsion = 25613.367961 eV Total energy + Delta-G solvation = -4165.917526 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.51269 -40.67466 -39.98399 -37.06551 -36.47332 -35.82739 -35.70115 -33.74997 -33.33231 -30.68686 -29.42380 -28.90615 -28.59882 -27.26653 -26.48701 -25.07700 -23.42051 -21.94940 -21.25788 -20.48016 -20.24581 -19.70191 -18.06719 -17.96140 -17.35739 -17.15510 -16.78199 -16.63336 -16.45866 -16.07477 -15.81874 -15.48901 -15.34257 -15.20962 -15.02381 -14.78088 -14.65055 -14.51155 -14.29758 -14.01314 -13.91744 -13.54596 -13.32128 -13.15182 -13.08985 -12.97969 -12.85239 -12.63114 -12.60297 -12.41314 -12.39214 -12.23748 -12.21202 -11.98854 -11.50830 -11.36011 -10.77153 -10.56509 -10.31656 -10.24595 -10.22199 -9.78213 -9.30090 -8.41349 -6.01807 0.44786 1.29670 1.34442 1.43401 1.95351 2.18201 2.22358 2.34978 2.59390 2.64499 3.14942 3.15293 3.69572 3.73119 3.87851 3.89505 3.97553 3.98716 4.13919 4.21446 4.33805 4.34683 4.41405 4.48194 4.54944 4.58410 4.61572 4.63618 4.67310 4.72348 4.82678 4.85287 4.89753 4.93719 4.94344 5.05351 5.07141 5.20985 5.38311 5.47620 5.52138 5.61847 5.67566 5.80939 5.94737 6.01146 6.16624 6.59598 6.63768 6.88546 7.31774 7.40057 7.96795 8.76101 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.033118 B = 0.001886 C = 0.001828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.251643 B =14845.746382 C =15314.463626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.030 4.030 3 C -0.125 4.125 4 C -0.248 4.248 5 C 0.537 3.463 6 O -0.581 6.581 7 N -0.711 5.711 8 C 0.145 3.855 9 C 0.114 3.886 10 C -0.164 4.164 11 C 0.032 3.968 12 N -0.524 5.524 13 C 0.053 3.947 14 C 0.453 3.547 15 O -0.602 6.602 16 N -0.593 5.593 17 C -0.326 4.326 18 H 0.057 0.943 19 C -0.014 4.014 20 N -0.934 5.934 21 Si 0.962 3.038 22 H -0.259 1.259 23 H -0.276 1.276 24 H -0.232 1.232 25 C 0.018 3.982 26 C 0.073 3.927 27 O -0.379 6.379 28 H 0.067 0.933 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.079 0.921 32 H 0.086 0.914 33 H 0.088 0.912 34 H 0.149 0.851 35 H 0.412 0.588 36 H 0.064 0.936 37 H 0.088 0.912 38 H 0.058 0.942 39 H 0.070 0.930 40 H 0.074 0.926 41 H 0.051 0.949 42 H 0.105 0.895 43 H 0.123 0.877 44 H 0.076 0.924 45 H 0.388 0.612 46 H 0.279 0.721 47 H 0.070 0.930 48 H 0.041 0.959 49 H 0.059 0.941 50 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.744 30.562 -2.880 31.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.032 4.032 3 C -0.181 4.181 4 C -0.269 4.269 5 C 0.328 3.672 6 O -0.464 6.464 7 N -0.362 5.362 8 C 0.021 3.979 9 C 0.074 3.926 10 C -0.222 4.222 11 C -0.096 4.096 12 N -0.249 5.249 13 C -0.078 4.078 14 C 0.241 3.759 15 O -0.486 6.486 16 N -0.235 5.235 17 C -0.455 4.455 18 H 0.075 0.925 19 C -0.213 4.213 20 N -0.575 5.575 21 Si 0.782 3.218 22 H -0.183 1.183 23 H -0.201 1.201 24 H -0.155 1.155 25 C -0.110 4.110 26 C -0.004 4.004 27 O -0.298 6.298 28 H 0.086 0.914 29 H 0.092 0.908 30 H 0.088 0.912 31 H 0.098 0.902 32 H 0.105 0.895 33 H 0.106 0.894 34 H 0.167 0.833 35 H 0.249 0.751 36 H 0.082 0.918 37 H 0.106 0.894 38 H 0.077 0.923 39 H 0.088 0.912 40 H 0.093 0.907 41 H 0.069 0.931 42 H 0.123 0.877 43 H 0.141 0.859 44 H 0.094 0.906 45 H 0.224 0.776 46 H 0.088 0.912 47 H 0.089 0.911 48 H 0.059 0.941 49 H 0.077 0.923 50 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -8.394 30.703 -2.518 31.930 hybrid contribution -0.516 -1.731 -0.464 1.864 sum -8.910 28.973 -2.981 30.458 Atomic orbital electron populations 1.21139 0.91908 1.02651 1.02748 1.22865 0.96546 0.95711 0.88036 1.21078 1.00161 0.92990 1.03892 1.22499 1.01288 0.90874 1.12225 1.19046 0.86900 0.85184 0.76029 1.90730 1.15698 1.88040 1.51918 1.45735 1.11911 1.05018 1.73565 1.21161 0.93152 0.81090 1.02538 1.21699 0.92520 0.93352 0.85035 1.22228 0.99544 1.02374 0.98040 1.22767 0.93602 0.89687 1.03562 1.61703 1.29743 1.01523 1.31979 1.21855 0.93892 0.87733 1.04290 1.20782 0.90348 0.83506 0.81299 1.90528 1.20461 1.82939 1.54674 1.42049 1.08235 1.05621 1.67566 1.18990 0.90198 0.86601 1.49713 0.92499 1.26068 1.04603 0.94415 0.96164 1.69797 1.36565 1.01052 1.50061 0.85403 0.77055 0.79624 0.79687 1.18345 1.20086 1.15484 1.22807 0.98844 1.00117 0.89230 1.22630 0.90976 0.83852 1.02945 1.87986 1.57103 1.49282 1.35458 0.91416 0.90840 0.91161 0.90232 0.89533 0.89378 0.83335 0.75100 0.91811 0.89368 0.92284 0.91153 0.90743 0.93087 0.87693 0.85942 0.90634 0.77633 0.91199 0.91129 0.94107 0.92280 0.86835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.05 8.52 71.24 0.61 -1.44 16 2 C -0.03 -0.39 6.11 -17.62 -0.11 -0.50 16 3 C -0.13 -0.82 10.10 71.24 0.72 -0.10 16 4 C -0.25 -3.66 9.62 23.43 0.23 -3.44 16 5 C 0.54 11.04 7.68 86.57 0.66 11.70 16 6 O -0.58 -15.65 13.16 -4.05 -0.05 -15.70 16 7 N -0.71 -12.53 5.15 -466.69 -2.40 -14.93 16 8 C 0.15 2.72 4.82 86.38 0.42 3.14 16 9 C 0.11 2.27 0.76 -10.76 -0.01 2.26 16 10 C -0.16 -3.22 8.00 71.98 0.58 -2.65 16 11 C 0.03 0.68 4.34 86.31 0.37 1.06 16 12 N -0.52 -15.10 3.78 -899.76 -3.40 -18.50 16 13 C 0.05 1.60 5.45 85.56 0.47 2.07 16 14 C 0.45 19.92 7.36 87.66 0.64 20.56 16 15 O -0.60 -32.20 14.29 -3.08 -0.04 -32.25 16 16 N -0.59 -27.49 5.09 -306.98 -1.56 -29.05 16 17 C -0.33 -18.85 10.16 84.04 0.85 -18.00 16 18 H 0.06 3.92 7.39 -2.91 -0.02 3.90 16 19 C -0.01 -0.76 5.50 84.93 0.47 -0.29 16 20 N -0.93 -56.00 13.96 21.66 0.30 -55.69 16 21 Si 0.96 38.56 27.74 68.60 1.90 40.46 16 22 H -0.26 -9.88 7.11 99.48 0.71 -9.17 16 23 H -0.28 -11.02 7.11 99.48 0.71 -10.31 16 24 H -0.23 -7.80 6.52 99.48 0.65 -7.15 16 25 C 0.02 0.54 5.30 86.32 0.46 1.00 16 26 C 0.07 1.76 6.61 72.02 0.48 2.24 16 27 O -0.38 -8.54 10.04 -148.98 -1.50 -10.04 16 28 H 0.07 1.19 8.09 -2.39 -0.02 1.18 16 29 H 0.07 0.84 8.09 -2.39 -0.02 0.82 16 30 H 0.07 1.51 5.96 -2.39 -0.01 1.50 16 31 H 0.08 0.37 7.82 -2.39 -0.02 0.35 16 32 H 0.09 0.41 8.14 -2.38 -0.02 0.39 16 33 H 0.09 0.44 8.14 -2.39 -0.02 0.42 16 34 H 0.15 1.40 7.88 -2.91 -0.02 1.38 16 35 H 0.41 5.94 7.18 -92.71 -0.67 5.27 16 36 H 0.06 1.35 8.14 -2.38 -0.02 1.33 16 37 H 0.09 1.58 8.14 -2.38 -0.02 1.56 16 38 H 0.06 1.49 6.12 -2.39 -0.01 1.48 16 39 H 0.07 1.14 6.86 -2.39 -0.02 1.12 16 40 H 0.07 1.34 8.14 -2.38 -0.02 1.32 16 41 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 42 H 0.10 1.89 8.08 -2.39 -0.02 1.87 16 43 H 0.12 3.00 8.03 -2.39 -0.02 2.98 16 44 H 0.08 1.92 8.11 -2.39 -0.02 1.91 16 45 H 0.39 14.97 5.76 -92.71 -0.53 14.43 16 46 H 0.28 15.29 8.31 -92.71 -0.77 14.52 16 47 H 0.07 2.65 6.14 -2.39 -0.01 2.63 16 48 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 49 H 0.06 1.52 6.49 -2.39 -0.02 1.51 16 50 H 0.11 2.33 8.14 -2.38 -0.02 2.31 16 Total: -1.00 -78.23 395.71 -0.22 -78.45 By element: Atomic # 1 Polarization: 39.95 SS G_CDS: -0.30 Total: 39.65 kcal Atomic # 6 Polarization: 10.77 SS G_CDS: 6.83 Total: 17.61 kcal Atomic # 7 Polarization: -111.12 SS G_CDS: -7.07 Total: -118.18 kcal Atomic # 8 Polarization: -56.39 SS G_CDS: -1.59 Total: -57.98 kcal Atomic # 14 Polarization: 38.56 SS G_CDS: 1.90 Total: 40.46 kcal Total: -78.23 -0.22 -78.45 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107710323.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.187 kcal (2) G-P(sol) polarization free energy of solvation -78.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds