Wall clock time and date at job start Wed Apr 1 2020 00:13:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42900 * 109.46959 * 2 1 4 4 C 1.42898 * 113.99660 * 178.92825 * 3 2 1 5 5 H 1.08996 * 109.47709 * 19.44778 * 4 3 2 6 6 C 1.53003 * 109.47213 * 259.44585 * 4 3 2 7 7 C 1.53003 * 109.46789 * 65.33834 * 6 4 3 8 8 C 1.50706 * 109.47020 * 139.45140 * 4 3 2 9 9 O 1.21276 * 119.99610 * 4.99577 * 8 4 3 10 10 N 1.34778 * 119.99750 * 185.00024 * 8 4 3 11 11 C 1.46500 * 119.99900 * 179.97438 * 10 8 4 12 12 H 1.08997 * 110.85530 * 322.66507 * 11 10 8 13 13 C 1.54638 * 110.96688 * 86.45018 * 11 10 8 14 14 C 1.51284 * 104.19025 * 93.36116 * 13 11 10 15 15 O 1.21286 * 124.93927 * 196.27166 * 14 13 11 16 16 N 1.34417 * 110.11659 * 16.25154 * 14 13 11 17 17 C 1.46505 * 124.34355 * 180.40952 * 16 14 13 18 18 C 1.53493 * 114.20652 * 300.01925 * 17 16 14 19 19 N 1.47065 * 87.98480 * 87.52426 * 18 17 16 20 20 C 1.36941 * 136.06168 * 206.86125 * 19 18 17 21 21 H 1.07996 * 119.99504 * 0.02562 * 20 19 18 22 22 C 1.38806 * 120.00020 * 179.97438 * 20 19 18 23 23 N 1.31613 * 120.00527 * 359.97438 * 22 20 19 24 24 Si 1.86805 * 119.99578 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.47387 * 359.97438 * 24 22 20 26 26 H 1.48495 * 109.46928 * 120.00350 * 24 22 20 27 27 H 1.48508 * 109.46847 * 239.99878 * 24 22 20 28 28 C 1.47067 * 87.88292 * 27.12049 * 19 18 17 29 29 C 1.46761 * 111.30301 * 0.66904 * 16 14 13 30 30 H 1.08999 * 109.47269 * 300.00013 * 1 2 3 31 31 H 1.09002 * 109.47260 * 60.00015 * 1 2 3 32 32 H 1.08998 * 109.47289 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.46663 * 240.00341 * 2 1 3 34 34 H 1.08990 * 109.46978 * 120.00228 * 2 1 3 35 35 H 1.08998 * 109.47470 * 185.34001 * 6 4 3 36 36 H 1.09003 * 109.47238 * 305.33815 * 6 4 3 37 37 H 1.09002 * 109.46701 * 177.84080 * 7 6 4 38 38 H 1.09000 * 109.47356 * 297.83453 * 7 6 4 39 39 H 1.08991 * 109.47165 * 57.84016 * 7 6 4 40 40 H 0.97002 * 120.00136 * 359.97438 * 10 8 4 41 41 H 1.08998 * 110.48575 * 334.68623 * 13 11 10 42 42 H 1.08998 * 110.59625 * 212.09068 * 13 11 10 43 43 H 1.09004 * 113.27645 * 166.96025 * 17 16 14 44 44 H 1.08995 * 113.46856 * 332.74630 * 18 17 16 45 45 H 1.09005 * 113.46855 * 202.30366 * 18 17 16 46 46 H 0.96996 * 120.00410 * 179.97438 * 23 22 20 47 47 H 1.09002 * 113.47286 * 87.66206 * 28 19 18 48 48 H 1.09003 * 113.47014 * 218.09963 * 28 19 18 49 49 H 1.09003 * 110.24092 * 101.72243 * 29 16 14 50 50 H 1.09000 * 110.24815 * 223.71299 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4306 1.4601 0.0244 5 1 3.8753 0.5208 -0.3041 6 6 3.8931 1.7727 1.4490 7 6 3.5727 0.5866 2.3609 8 6 3.8624 2.5703 -0.8988 9 8 3.0301 3.2615 -1.4467 10 7 5.1736 2.7949 -1.1154 11 6 5.5934 3.8737 -2.0133 12 1 4.9172 3.9556 -2.8642 13 6 5.6934 5.2175 -1.2547 14 6 7.1431 5.2964 -0.8296 15 8 7.5784 6.0457 0.0191 16 7 7.8786 4.4150 -1.5289 17 6 9.3214 4.2248 -1.3603 18 6 10.1583 5.4817 -1.6353 19 7 9.9629 5.8568 -0.2268 20 6 9.9339 7.0247 0.4878 21 1 10.0805 7.9691 -0.0151 22 6 9.7149 6.9946 1.8581 23 7 9.5347 5.8437 2.4707 24 14 9.6746 8.5878 2.8327 25 1 9.9021 9.7342 1.9167 26 1 8.3506 8.7331 3.4891 27 1 10.7398 8.5623 3.8671 28 6 9.8190 4.4253 0.0778 29 6 7.0517 3.6722 -2.4871 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8933 -0.5138 -0.8901 34 1 1.8933 -0.5138 0.8899 35 1 4.9682 1.9523 1.4508 36 1 3.3758 2.6606 1.8124 37 1 3.9365 0.7935 3.3673 38 1 2.4942 0.4311 2.3893 39 1 4.0589 -0.3095 1.9758 40 1 5.8393 2.2422 -0.6769 41 1 5.0398 5.2127 -0.3824 42 1 5.4432 6.0492 -1.9133 43 1 9.6965 3.3233 -1.8448 44 1 9.6888 6.1709 -2.3371 45 1 11.1967 5.2655 -1.8869 46 1 9.3821 5.8227 3.4284 47 1 10.7669 3.9275 0.2825 48 1 9.0609 4.2160 0.8325 49 1 7.1840 4.0751 -3.4912 50 1 7.3106 2.6136 -2.4677 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108513781.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:13:04 Heat of formation + Delta-G solvation = -25.830195 kcal Electronic energy + Delta-G solvation = -31256.766657 eV Core-core repulsion = 27094.569884 eV Total energy + Delta-G solvation = -4162.196772 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.62118 -39.70342 -38.12108 -37.08489 -35.75671 -34.15140 -33.34378 -31.87277 -31.32037 -30.11847 -27.66264 -27.35940 -26.53119 -24.50725 -23.36338 -23.10381 -22.52620 -21.53465 -20.65042 -20.18688 -17.77343 -17.48636 -17.46298 -16.74037 -16.42940 -16.14625 -15.71530 -15.05576 -14.79234 -14.62218 -14.43012 -14.32134 -13.94129 -13.87156 -13.65043 -13.41280 -13.11493 -12.74430 -12.71933 -12.53283 -12.46654 -12.39581 -12.10455 -11.99015 -11.71760 -11.59463 -11.49456 -11.44576 -11.15159 -11.01626 -11.00439 -10.67504 -10.50611 -10.16210 -9.95359 -9.75330 -9.47781 -9.31471 -9.21779 -8.71751 -8.29461 -7.82887 -6.54390 -5.46623 -2.73595 2.47571 2.69307 3.52356 3.56209 3.59757 3.60163 3.62310 3.64670 4.39277 4.52767 4.56966 4.61323 4.68601 4.75951 4.79011 4.93389 4.96535 5.01997 5.07030 5.23046 5.27298 5.34245 5.37020 5.43617 5.49874 5.57375 5.61964 5.71747 5.73771 5.78121 5.81478 5.84818 5.90120 5.99902 6.00660 6.08722 6.36375 6.39271 6.52990 6.60031 6.83408 6.95463 7.32036 7.37263 7.56321 7.78490 7.96400 8.11585 8.24454 9.25273 9.29783 10.02794 10.90000 11.72980 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.014615 B = 0.003044 C = 0.002781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1915.382180 B = 9196.985663 C =10067.276860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.050 3.950 3 O -0.355 6.355 4 C 0.077 3.923 5 H 0.087 0.913 6 C -0.140 4.140 7 C -0.153 4.153 8 C 0.513 3.487 9 O -0.519 6.519 10 N -0.717 5.717 11 C 0.136 3.864 12 H 0.108 0.892 13 C -0.167 4.167 14 C 0.484 3.516 15 O -0.414 6.414 16 N -0.609 5.609 17 C 0.098 3.902 18 C 0.100 3.900 19 N -0.586 5.586 20 C -0.181 4.181 21 H 0.070 0.930 22 C 0.004 3.996 23 N -0.917 5.917 24 Si 0.901 3.099 25 H -0.284 1.284 26 H -0.294 1.294 27 H -0.296 1.296 28 C 0.151 3.849 29 C 0.106 3.894 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.070 0.930 33 H 0.048 0.952 34 H 0.055 0.945 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.063 0.937 38 H 0.060 0.940 39 H 0.054 0.946 40 H 0.403 0.597 41 H 0.095 0.905 42 H 0.101 0.899 43 H 0.084 0.916 44 H 0.035 0.965 45 H 0.037 0.963 46 H 0.244 0.756 47 H 0.028 0.972 48 H 0.076 0.924 49 H 0.077 0.923 50 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.342 -17.207 -9.070 23.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.027 4.027 3 O -0.273 6.273 4 C 0.015 3.985 5 H 0.104 0.896 6 C -0.178 4.178 7 C -0.210 4.210 8 C 0.298 3.702 9 O -0.393 6.393 10 N -0.371 5.371 11 C 0.031 3.969 12 H 0.126 0.874 13 C -0.209 4.209 14 C 0.267 3.733 15 O -0.278 6.278 16 N -0.347 5.347 17 C -0.007 4.007 18 C -0.028 4.028 19 N -0.311 5.311 20 C -0.308 4.308 21 H 0.088 0.912 22 C -0.192 4.192 23 N -0.566 5.566 24 Si 0.733 3.267 25 H -0.209 1.209 26 H -0.221 1.221 27 H -0.224 1.224 28 C 0.024 3.976 29 C -0.018 4.018 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.089 0.911 33 H 0.066 0.934 34 H 0.073 0.927 35 H 0.100 0.900 36 H 0.098 0.902 37 H 0.082 0.918 38 H 0.079 0.921 39 H 0.073 0.927 40 H 0.238 0.762 41 H 0.113 0.887 42 H 0.119 0.881 43 H 0.102 0.898 44 H 0.054 0.946 45 H 0.054 0.946 46 H 0.054 0.946 47 H 0.046 0.954 48 H 0.094 0.906 49 H 0.095 0.905 50 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -12.827 -15.850 -8.652 22.150 hybrid contribution 0.536 0.311 0.689 0.927 sum -12.291 -15.539 -7.963 21.353 Atomic orbital electron populations 1.21727 0.93521 1.02131 1.03438 1.22729 0.95966 0.83739 1.00239 1.88053 1.18262 1.26180 1.94764 1.21961 0.83845 0.97477 0.95209 0.89563 1.21974 1.02217 1.00535 0.93069 1.21836 1.01909 0.97361 0.99919 1.20547 0.82390 0.85342 0.81907 1.90719 1.51533 1.48079 1.48942 1.45948 1.07042 1.35456 1.48636 1.21818 0.95427 0.86555 0.93074 0.87388 1.22826 0.97612 0.97840 1.02608 1.20729 0.87429 0.81831 0.83300 1.91230 1.74456 1.35108 1.27043 1.47764 1.06852 1.40759 1.39356 1.22668 0.79014 0.97273 1.01724 1.22863 0.96030 0.93709 0.90158 1.45187 1.82670 1.01620 1.01604 1.18566 1.40313 0.82850 0.89070 0.91203 1.24485 1.02483 0.96076 0.96130 1.69784 1.56116 1.22721 1.07941 0.86204 0.76930 0.83374 0.80156 1.20935 1.22094 1.22396 1.22316 0.97498 0.85717 0.92074 1.22150 0.88719 0.97388 0.93566 0.91739 0.91680 0.91109 0.93423 0.92670 0.90003 0.90170 0.91795 0.92112 0.92692 0.76190 0.88693 0.88051 0.89836 0.94649 0.94587 0.94609 0.95416 0.90557 0.90457 0.90616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 10.28 37.16 0.38 -0.71 16 2 C 0.05 0.40 6.03 37.16 0.22 0.63 16 3 O -0.35 -4.17 9.30 -55.09 -0.51 -4.68 16 4 C 0.08 0.78 2.68 -27.88 -0.07 0.71 16 5 H 0.09 0.64 7.69 -51.93 -0.40 0.24 16 6 C -0.14 -1.39 5.61 -26.73 -0.15 -1.54 16 7 C -0.15 -1.22 8.92 37.16 0.33 -0.89 16 8 C 0.51 6.50 7.18 -10.98 -0.08 6.42 16 9 O -0.52 -8.67 16.25 -14.30 -0.23 -8.91 16 10 N -0.72 -7.78 5.06 -52.13 -0.26 -8.05 16 11 C 0.14 1.58 3.42 -66.20 -0.23 1.36 16 12 H 0.11 1.19 7.72 -51.93 -0.40 0.79 16 13 C -0.17 -2.56 6.58 -26.74 -0.18 -2.74 16 14 C 0.48 9.57 7.54 -10.86 -0.08 9.49 16 15 O -0.41 -10.86 12.43 5.55 0.07 -10.79 16 16 N -0.61 -9.87 3.18 -164.52 -0.52 -10.39 16 17 C 0.10 1.72 5.13 -67.82 -0.35 1.37 16 18 C 0.10 2.06 8.34 -8.52 -0.07 1.99 16 19 N -0.59 -15.32 2.28 -184.82 -0.42 -15.74 16 20 C -0.18 -5.33 8.89 -15.06 -0.13 -5.46 16 21 H 0.07 2.06 7.83 -52.49 -0.41 1.65 16 22 C 0.00 0.12 5.05 -17.44 -0.09 0.03 16 23 N -0.92 -28.30 11.51 55.49 0.64 -27.66 16 24 Si 0.90 23.92 29.55 -169.99 -5.02 18.90 16 25 H -0.28 -7.35 7.11 56.52 0.40 -6.95 16 26 H -0.29 -7.94 7.11 56.52 0.40 -7.54 16 27 H -0.30 -7.81 7.11 56.52 0.40 -7.41 16 28 C 0.15 3.51 6.41 -8.52 -0.05 3.46 16 29 C 0.11 1.15 6.98 -3.03 -0.02 1.13 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.05 0.34 8.13 -51.93 -0.42 -0.08 16 34 H 0.06 0.37 5.87 -51.93 -0.30 0.06 16 35 H 0.08 0.79 7.76 -51.93 -0.40 0.39 16 36 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 37 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 38 H 0.06 0.48 6.35 -51.93 -0.33 0.15 16 39 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 40 H 0.40 3.69 8.29 -40.82 -0.34 3.35 16 41 H 0.09 1.60 8.09 -51.93 -0.42 1.18 16 42 H 0.10 1.44 8.14 -51.93 -0.42 1.02 16 43 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 44 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 45 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 46 H 0.24 7.40 8.31 -40.82 -0.34 7.06 16 47 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 48 H 0.08 2.04 6.60 -51.93 -0.34 1.69 16 49 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 50 H 0.08 0.65 8.05 -51.93 -0.42 0.23 16 LS Contribution 398.35 15.07 6.00 6.00 Total: -1.00 -38.50 398.35 -9.23 -47.73 By element: Atomic # 1 Polarization: 6.74 SS G_CDS: -8.40 Total: -1.66 kcal Atomic # 6 Polarization: 15.81 SS G_CDS: -0.57 Total: 15.24 kcal Atomic # 7 Polarization: -61.26 SS G_CDS: -0.57 Total: -61.83 kcal Atomic # 8 Polarization: -23.70 SS G_CDS: -0.68 Total: -24.38 kcal Atomic # 14 Polarization: 23.92 SS G_CDS: -5.02 Total: 18.90 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -38.50 -9.23 -47.73 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108513781.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.897 kcal (2) G-P(sol) polarization free energy of solvation -38.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds