Wall clock time and date at job start Wed Apr 1 2020 00:13:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42900 * 109.46959 * 2 1 4 4 C 1.42898 * 113.99660 * 178.92825 * 3 2 1 5 5 H 1.08996 * 109.47709 * 19.44778 * 4 3 2 6 6 C 1.53003 * 109.47213 * 259.44585 * 4 3 2 7 7 C 1.53003 * 109.46789 * 65.33834 * 6 4 3 8 8 C 1.50706 * 109.47020 * 139.45140 * 4 3 2 9 9 O 1.21276 * 119.99610 * 4.99577 * 8 4 3 10 10 N 1.34778 * 119.99750 * 185.00024 * 8 4 3 11 11 C 1.46500 * 119.99900 * 179.97438 * 10 8 4 12 12 H 1.08997 * 110.85530 * 322.66507 * 11 10 8 13 13 C 1.54638 * 110.96688 * 86.45018 * 11 10 8 14 14 C 1.51284 * 104.19025 * 93.36116 * 13 11 10 15 15 O 1.21286 * 124.93927 * 196.27166 * 14 13 11 16 16 N 1.34417 * 110.11659 * 16.25154 * 14 13 11 17 17 C 1.46505 * 124.34355 * 180.40952 * 16 14 13 18 18 C 1.53493 * 114.20652 * 300.01925 * 17 16 14 19 19 N 1.47065 * 87.98480 * 87.52426 * 18 17 16 20 20 C 1.36941 * 136.06168 * 206.86125 * 19 18 17 21 21 H 1.07996 * 119.99504 * 0.02562 * 20 19 18 22 22 C 1.38806 * 120.00020 * 179.97438 * 20 19 18 23 23 N 1.31613 * 120.00527 * 359.97438 * 22 20 19 24 24 Si 1.86805 * 119.99578 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.47387 * 359.97438 * 24 22 20 26 26 H 1.48495 * 109.46928 * 120.00350 * 24 22 20 27 27 H 1.48508 * 109.46847 * 239.99878 * 24 22 20 28 28 C 1.47067 * 87.88292 * 27.12049 * 19 18 17 29 29 C 1.46761 * 111.30301 * 0.66904 * 16 14 13 30 30 H 1.08999 * 109.47269 * 300.00013 * 1 2 3 31 31 H 1.09002 * 109.47260 * 60.00015 * 1 2 3 32 32 H 1.08998 * 109.47289 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.46663 * 240.00341 * 2 1 3 34 34 H 1.08990 * 109.46978 * 120.00228 * 2 1 3 35 35 H 1.08998 * 109.47470 * 185.34001 * 6 4 3 36 36 H 1.09003 * 109.47238 * 305.33815 * 6 4 3 37 37 H 1.09002 * 109.46701 * 177.84080 * 7 6 4 38 38 H 1.09000 * 109.47356 * 297.83453 * 7 6 4 39 39 H 1.08991 * 109.47165 * 57.84016 * 7 6 4 40 40 H 0.97002 * 120.00136 * 359.97438 * 10 8 4 41 41 H 1.08998 * 110.48575 * 334.68623 * 13 11 10 42 42 H 1.08998 * 110.59625 * 212.09068 * 13 11 10 43 43 H 1.09004 * 113.27645 * 166.96025 * 17 16 14 44 44 H 1.08995 * 113.46856 * 332.74630 * 18 17 16 45 45 H 1.09005 * 113.46855 * 202.30366 * 18 17 16 46 46 H 0.96996 * 120.00410 * 179.97438 * 23 22 20 47 47 H 1.09002 * 113.47286 * 87.66206 * 28 19 18 48 48 H 1.09003 * 113.47014 * 218.09963 * 28 19 18 49 49 H 1.09003 * 110.24092 * 101.72243 * 29 16 14 50 50 H 1.09000 * 110.24815 * 223.71299 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4306 1.4601 0.0244 5 1 3.8753 0.5208 -0.3041 6 6 3.8931 1.7727 1.4490 7 6 3.5727 0.5866 2.3609 8 6 3.8624 2.5703 -0.8988 9 8 3.0301 3.2615 -1.4467 10 7 5.1736 2.7949 -1.1154 11 6 5.5934 3.8737 -2.0133 12 1 4.9172 3.9556 -2.8642 13 6 5.6934 5.2175 -1.2547 14 6 7.1431 5.2964 -0.8296 15 8 7.5784 6.0457 0.0191 16 7 7.8786 4.4150 -1.5289 17 6 9.3214 4.2248 -1.3603 18 6 10.1583 5.4817 -1.6353 19 7 9.9629 5.8568 -0.2268 20 6 9.9339 7.0247 0.4878 21 1 10.0805 7.9691 -0.0151 22 6 9.7149 6.9946 1.8581 23 7 9.5347 5.8437 2.4707 24 14 9.6746 8.5878 2.8327 25 1 9.9021 9.7342 1.9167 26 1 8.3506 8.7331 3.4891 27 1 10.7398 8.5623 3.8671 28 6 9.8190 4.4253 0.0778 29 6 7.0517 3.6722 -2.4871 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8933 -0.5138 -0.8901 34 1 1.8933 -0.5138 0.8899 35 1 4.9682 1.9523 1.4508 36 1 3.3758 2.6606 1.8124 37 1 3.9365 0.7935 3.3673 38 1 2.4942 0.4311 2.3893 39 1 4.0589 -0.3095 1.9758 40 1 5.8393 2.2422 -0.6769 41 1 5.0398 5.2127 -0.3824 42 1 5.4432 6.0492 -1.9133 43 1 9.6965 3.3233 -1.8448 44 1 9.6888 6.1709 -2.3371 45 1 11.1967 5.2655 -1.8869 46 1 9.3821 5.8227 3.4284 47 1 10.7669 3.9275 0.2825 48 1 9.0609 4.2160 0.8325 49 1 7.1840 4.0751 -3.4912 50 1 7.3106 2.6136 -2.4677 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108513781.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:13:02 Heat of formation + Delta-G solvation = -53.738215 kcal Electronic energy + Delta-G solvation = -31257.976839 eV Core-core repulsion = 27094.569884 eV Total energy + Delta-G solvation = -4163.406955 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.81623 -40.86897 -39.16140 -38.52689 -37.19851 -35.16921 -34.44290 -33.79893 -31.95659 -31.45676 -29.21362 -28.65397 -27.56489 -26.24904 -25.19661 -23.76789 -23.33248 -22.49306 -22.12999 -21.38524 -19.24347 -18.65899 -18.44886 -18.31550 -17.51495 -17.13012 -16.84742 -16.75431 -16.09497 -16.03986 -15.67838 -15.53107 -15.17404 -15.04437 -14.93646 -14.67216 -14.43063 -14.07434 -13.90559 -13.42696 -13.35705 -13.24186 -13.19987 -13.18832 -12.98587 -12.85409 -12.84150 -12.61624 -12.49548 -12.38882 -12.33763 -12.11494 -11.87499 -11.73692 -11.66774 -11.19261 -11.01048 -10.78163 -10.41956 -10.32783 -9.92185 -9.27412 -8.58655 -7.70436 -4.93974 1.38741 1.42596 1.48883 1.50221 1.83752 2.09553 2.25921 2.56648 2.89740 3.45278 3.51825 3.56840 3.64987 3.68613 3.82322 3.89022 3.91159 3.98212 4.20088 4.25624 4.29475 4.32366 4.49761 4.53446 4.53525 4.65440 4.69248 4.73629 4.75330 4.81458 4.83773 4.87773 4.93917 4.98920 5.04481 5.06528 5.12814 5.27967 5.29129 5.33576 5.38172 5.43707 5.64476 6.09623 6.13518 6.20472 6.50680 6.56538 7.09338 7.18044 7.77396 7.84791 8.81300 9.48790 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.014615 B = 0.003044 C = 0.002781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1915.382180 B = 9196.985663 C =10067.276860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.042 3.958 3 O -0.386 6.386 4 C 0.081 3.919 5 H 0.124 0.876 6 C -0.138 4.138 7 C -0.149 4.149 8 C 0.511 3.489 9 O -0.565 6.565 10 N -0.706 5.706 11 C 0.147 3.853 12 H 0.124 0.876 13 C -0.160 4.160 14 C 0.474 3.526 15 O -0.492 6.492 16 N -0.605 5.605 17 C 0.132 3.868 18 C 0.098 3.902 19 N -0.619 5.619 20 C -0.175 4.175 21 H 0.058 0.942 22 C -0.053 4.053 23 N -0.941 5.941 24 Si 0.951 3.049 25 H -0.275 1.275 26 H -0.306 1.306 27 H -0.292 1.292 28 C 0.145 3.855 29 C 0.110 3.890 30 H 0.055 0.945 31 H 0.051 0.949 32 H 0.095 0.905 33 H 0.062 0.938 34 H 0.072 0.928 35 H 0.082 0.918 36 H 0.049 0.951 37 H 0.059 0.941 38 H 0.061 0.939 39 H 0.078 0.922 40 H 0.414 0.586 41 H 0.070 0.930 42 H 0.110 0.890 43 H 0.147 0.853 44 H 0.031 0.969 45 H 0.061 0.939 46 H 0.233 0.767 47 H 0.027 0.973 48 H 0.034 0.966 49 H 0.109 0.891 50 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.078 -20.189 -11.722 26.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.034 4.034 3 O -0.305 6.305 4 C 0.020 3.980 5 H 0.141 0.859 6 C -0.176 4.176 7 C -0.206 4.206 8 C 0.297 3.703 9 O -0.442 6.442 10 N -0.360 5.360 11 C 0.041 3.959 12 H 0.142 0.858 13 C -0.202 4.202 14 C 0.259 3.741 15 O -0.363 6.363 16 N -0.341 5.341 17 C 0.028 3.972 18 C -0.028 4.028 19 N -0.344 5.344 20 C -0.304 4.304 21 H 0.076 0.924 22 C -0.245 4.245 23 N -0.592 5.592 24 Si 0.783 3.217 25 H -0.200 1.200 26 H -0.234 1.234 27 H -0.220 1.220 28 C 0.019 3.981 29 C -0.012 4.012 30 H 0.074 0.926 31 H 0.070 0.930 32 H 0.114 0.886 33 H 0.080 0.920 34 H 0.090 0.910 35 H 0.100 0.900 36 H 0.068 0.932 37 H 0.078 0.922 38 H 0.080 0.920 39 H 0.097 0.903 40 H 0.251 0.749 41 H 0.089 0.911 42 H 0.129 0.871 43 H 0.164 0.836 44 H 0.050 0.950 45 H 0.078 0.922 46 H 0.042 0.958 47 H 0.044 0.956 48 H 0.052 0.948 49 H 0.127 0.873 50 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -12.538 -18.895 -11.380 25.372 hybrid contribution 0.416 1.218 1.418 1.915 sum -12.122 -17.677 -9.962 23.636 Atomic orbital electron populations 1.21768 0.93315 1.03418 1.02347 1.22975 0.96267 0.82426 1.01698 1.88032 1.19021 1.28563 1.94861 1.22010 0.83704 0.97973 0.94348 0.85897 1.21943 1.01750 1.00307 0.93619 1.21817 1.02205 0.97276 0.99293 1.21085 0.82373 0.85355 0.81466 1.90696 1.52794 1.49849 1.50900 1.45901 1.06883 1.34989 1.48220 1.21817 0.96831 0.84471 0.92754 0.85834 1.22737 0.94231 1.00960 1.02309 1.21423 0.89229 0.81138 0.82294 1.91189 1.76269 1.38378 1.30470 1.47869 1.06734 1.40052 1.39483 1.22412 0.79404 0.98202 0.97228 1.23107 0.97820 0.94831 0.87065 1.45454 1.82852 1.01803 1.04310 1.18682 1.38140 0.84095 0.89434 0.92427 1.25080 1.03833 0.98408 0.97215 1.69955 1.58133 1.24008 1.07147 0.85386 0.76137 0.81108 0.79038 1.19951 1.23395 1.21977 1.22317 0.96560 0.84522 0.94749 1.22521 0.86341 0.99152 0.93138 0.92603 0.93005 0.88616 0.92025 0.90951 0.89997 0.93196 0.92184 0.92044 0.90328 0.74891 0.91116 0.87136 0.83567 0.95032 0.92169 0.95753 0.95561 0.94782 0.87330 0.86564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 10.28 71.98 0.74 -1.26 16 2 C 0.04 0.59 6.03 71.98 0.43 1.03 16 3 O -0.39 -8.71 9.30 -129.99 -1.21 -9.92 16 4 C 0.08 1.51 2.68 29.85 0.08 1.59 16 5 H 0.12 1.36 7.69 -2.39 -0.02 1.34 16 6 C -0.14 -2.66 5.61 30.60 0.17 -2.49 16 7 C -0.15 -2.14 8.92 71.98 0.64 -1.50 16 8 C 0.51 12.31 7.18 87.66 0.63 12.94 16 9 O -0.56 -18.74 16.25 15.97 0.26 -18.48 16 10 N -0.71 -13.65 5.06 -437.24 -2.21 -15.86 16 11 C 0.15 2.98 3.42 46.11 0.16 3.14 16 12 H 0.12 2.29 7.72 -2.39 -0.02 2.27 16 13 C -0.16 -4.87 6.58 30.59 0.20 -4.67 16 14 C 0.47 18.71 7.54 87.90 0.66 19.37 16 15 O -0.49 -26.92 12.43 -3.05 -0.04 -26.95 16 16 N -0.60 -17.84 3.18 -793.01 -2.52 -20.35 16 17 C 0.13 4.19 5.13 45.46 0.23 4.43 16 18 C 0.10 3.82 8.34 83.17 0.69 4.51 16 19 N -0.62 -32.57 2.28 -738.64 -1.68 -34.26 16 20 C -0.17 -10.59 8.89 84.03 0.75 -9.84 16 21 H 0.06 3.51 7.83 -2.91 -0.02 3.49 16 22 C -0.05 -3.29 5.05 84.86 0.43 -2.86 16 23 N -0.94 -60.58 11.51 21.65 0.25 -60.33 16 24 Si 0.95 51.07 29.55 68.60 2.03 53.10 16 25 H -0.27 -14.08 7.11 99.48 0.71 -13.37 16 26 H -0.31 -16.82 7.11 99.48 0.71 -16.12 16 27 H -0.29 -15.30 7.11 99.48 0.71 -14.59 16 28 C 0.15 6.71 6.41 83.17 0.53 7.24 16 29 C 0.11 1.81 6.98 86.89 0.61 2.42 16 30 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.06 0.69 8.13 -2.38 -0.02 0.67 16 34 H 0.07 0.76 5.87 -2.39 -0.01 0.74 16 35 H 0.08 1.54 7.76 -2.39 -0.02 1.52 16 36 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.06 0.88 6.35 -2.39 -0.02 0.86 16 39 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 40 H 0.41 6.28 8.29 -92.71 -0.77 5.51 16 41 H 0.07 2.49 8.09 -2.39 -0.02 2.47 16 42 H 0.11 3.11 8.14 -2.39 -0.02 3.09 16 43 H 0.15 3.00 8.14 -2.39 -0.02 2.98 16 44 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 45 H 0.06 2.10 8.14 -2.38 -0.02 2.08 16 46 H 0.23 14.86 8.31 -92.71 -0.77 14.09 16 47 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 48 H 0.03 1.86 6.60 -2.39 -0.02 1.84 16 49 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 50 H 0.12 1.13 8.05 -2.39 -0.02 1.11 16 Total: -1.00 -92.11 398.35 2.00 -90.11 By element: Atomic # 1 Polarization: 8.73 SS G_CDS: 0.17 Total: 8.90 kcal Atomic # 6 Polarization: 27.09 SS G_CDS: 6.96 Total: 34.05 kcal Atomic # 7 Polarization: -124.64 SS G_CDS: -6.17 Total: -130.80 kcal Atomic # 8 Polarization: -54.36 SS G_CDS: -0.99 Total: -55.35 kcal Atomic # 14 Polarization: 51.07 SS G_CDS: 2.03 Total: 53.10 kcal Total: -92.11 2.00 -90.11 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108513781.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.368 kcal (2) G-P(sol) polarization free energy of solvation -92.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds