Wall clock time and date at job start Wed Apr 1 2020 00:13:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42897 * 109.46832 * 2 1 4 4 C 1.42896 * 114.00125 * 177.26814 * 3 2 1 5 5 H 1.09005 * 109.46795 * 30.17923 * 4 3 2 6 6 C 1.53000 * 109.47204 * 150.17739 * 4 3 2 7 7 C 1.53001 * 109.47075 * 294.74921 * 6 4 3 8 8 C 1.50695 * 109.47605 * 270.18283 * 4 3 2 9 9 O 1.21289 * 119.99848 * 359.97438 * 8 4 3 10 10 N 1.34775 * 120.00352 * 179.97438 * 8 4 3 11 11 C 1.46502 * 120.00201 * 179.97438 * 10 8 4 12 12 H 1.09006 * 110.85665 * 31.21198 * 11 10 8 13 13 C 1.54625 * 110.97019 * 267.38235 * 11 10 8 14 14 C 1.51286 * 104.19421 * 217.07898 * 13 11 10 15 15 O 1.21280 * 124.94676 * 196.24911 * 14 13 11 16 16 N 1.34424 * 110.11407 * 16.25476 * 14 13 11 17 17 C 1.46502 * 124.34990 * 180.38361 * 16 14 13 18 18 C 1.53947 * 113.73849 * 38.76632 * 17 16 14 19 19 N 1.47818 * 86.03263 * 222.08333 * 18 17 16 20 20 C 1.36940 * 134.45575 * 204.64870 * 19 18 17 21 21 H 1.07999 * 120.00343 * 179.86688 * 20 19 18 22 22 C 1.38813 * 119.99735 * 359.86046 * 20 19 18 23 23 N 1.31619 * 120.00508 * 0.02562 * 22 20 19 24 24 Si 1.86808 * 119.99573 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.46790 * 90.00275 * 24 22 20 26 26 H 1.48506 * 109.46786 * 209.99919 * 24 22 20 27 27 H 1.48494 * 109.47399 * 330.00315 * 24 22 20 28 28 C 1.47578 * 91.05147 * 24.55077 * 19 18 17 29 29 C 1.46760 * 111.30186 * 0.40258 * 16 14 13 30 30 H 1.08997 * 109.47541 * 60.00092 * 1 2 3 31 31 H 1.09002 * 109.47324 * 299.99506 * 1 2 3 32 32 H 1.09000 * 109.47005 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.46798 * 119.99907 * 2 1 3 34 34 H 1.08995 * 109.46718 * 240.00242 * 2 1 3 35 35 H 1.08993 * 109.47420 * 54.75424 * 6 4 3 36 36 H 1.09005 * 109.47147 * 174.75417 * 6 4 3 37 37 H 1.08999 * 109.47551 * 304.52159 * 7 6 4 38 38 H 1.09000 * 109.46960 * 64.52795 * 7 6 4 39 39 H 1.09002 * 109.47052 * 184.52299 * 7 6 4 40 40 H 0.97000 * 119.99865 * 359.97438 * 10 8 4 41 41 H 1.08999 * 110.48887 * 335.75442 * 13 11 10 42 42 H 1.08997 * 110.48859 * 98.40800 * 13 11 10 43 43 H 1.08998 * 112.94242 * 170.35152 * 17 16 14 44 44 H 1.08997 * 113.77029 * 336.34205 * 18 17 16 45 45 H 1.08996 * 113.76894 * 107.74728 * 18 17 16 46 46 H 0.96999 * 119.99944 * 180.02562 * 23 22 20 47 47 H 1.09002 * 113.76447 * 221.15460 * 28 19 18 48 48 H 1.08998 * 113.77252 * 89.75843 * 28 19 18 49 49 H 1.09003 * 110.24858 * 223.98530 * 29 16 14 50 50 H 1.09007 * 110.24397 * 101.98310 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4294 1.4607 0.0622 5 1 3.8842 0.5958 -0.4208 6 6 3.8712 2.7371 -0.6564 7 6 3.5445 2.6225 -2.1467 8 6 3.8663 1.5186 1.5033 9 8 3.0401 1.4683 2.3899 10 7 5.1749 1.6264 1.8070 11 6 5.5996 1.6833 3.2079 12 1 4.9223 1.1113 3.8423 13 6 5.7101 3.1471 3.6937 14 6 6.9135 3.1439 4.6104 15 8 7.1797 4.0156 5.4105 16 7 7.6451 2.0343 4.4091 17 6 8.8742 1.7110 5.1378 18 6 8.8257 2.0835 6.6308 19 7 10.2082 2.5738 6.4479 20 6 11.2784 2.7588 7.2819 21 1 12.2094 3.1403 6.8894 22 6 11.1666 2.4560 8.6320 23 7 10.0322 1.9906 9.1104 24 14 12.6263 2.7091 9.7699 25 1 12.5853 4.0841 10.3293 26 1 12.5672 1.7219 10.8778 27 1 13.8867 2.5224 9.0072 28 6 9.9727 2.7813 5.0058 29 6 7.0545 1.1885 3.3652 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5138 0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 3.3447 3.5928 -0.2338 36 1 4.9453 2.8724 -0.5293 37 1 4.0059 1.7219 -2.5517 38 1 2.4639 2.5680 -2.2786 39 1 3.9309 3.4962 -2.6716 40 1 5.8356 1.6663 1.0979 41 1 5.8749 3.8176 2.8502 42 1 4.8135 3.4357 4.2423 43 1 9.2251 0.6963 4.9499 44 1 8.1080 2.8699 6.8643 45 1 8.7477 1.2235 7.2958 46 1 9.9540 1.7795 10.0539 47 1 10.8088 2.4773 4.3760 48 1 9.5927 3.7731 4.7610 49 1 7.0662 0.1435 3.6749 50 1 7.5979 1.3111 2.4282 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108513782.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:13:07 Heat of formation + Delta-G solvation = -53.058083 kcal Electronic energy + Delta-G solvation = -29965.953748 eV Core-core repulsion = 25802.576286 eV Total energy + Delta-G solvation = -4163.377462 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.88222 -40.02678 -38.09983 -37.18256 -36.33641 -34.69962 -33.83455 -32.16054 -31.21993 -30.44443 -27.98260 -27.48410 -26.61820 -24.73637 -23.50097 -23.25997 -22.64133 -21.83921 -20.87469 -20.36356 -18.33950 -18.05994 -17.60737 -16.80217 -16.65754 -16.16439 -15.80753 -15.44804 -15.19832 -14.89039 -14.59083 -14.57000 -14.40807 -14.05225 -13.76855 -13.56905 -13.49604 -13.29622 -12.91951 -12.79251 -12.54870 -12.43778 -12.21448 -12.06386 -11.85392 -11.75757 -11.57401 -11.55811 -11.42650 -11.23484 -11.18328 -10.85279 -10.73608 -10.68548 -10.19082 -9.99573 -9.76662 -9.54476 -9.49183 -9.15356 -8.66212 -8.19792 -6.81189 -5.71468 -3.03656 2.21787 2.55803 2.91817 3.22060 3.31089 3.43064 3.47940 3.49254 4.12242 4.31476 4.35334 4.38807 4.50578 4.51844 4.69972 4.74280 4.80435 4.85438 4.86882 5.01368 5.01743 5.22561 5.22821 5.31348 5.31900 5.40050 5.47181 5.53559 5.57784 5.60829 5.61177 5.65640 5.75158 5.78806 5.80783 5.83210 6.09805 6.28291 6.51281 6.57471 6.64483 6.87143 7.10058 7.29788 7.48405 7.59311 7.63178 7.85712 8.01775 8.54578 9.08986 9.75278 10.64214 11.45744 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.029593 B = 0.001986 C = 0.001934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.943453 B =14097.759824 C =14471.547919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.055 3.945 3 O -0.354 6.354 4 C 0.077 3.923 5 H 0.088 0.912 6 C -0.118 4.118 7 C -0.149 4.149 8 C 0.491 3.509 9 O -0.518 6.518 10 N -0.719 5.719 11 C 0.133 3.867 12 H 0.113 0.887 13 C -0.167 4.167 14 C 0.515 3.485 15 O -0.507 6.507 16 N -0.606 5.606 17 C 0.098 3.902 18 C 0.153 3.847 19 N -0.605 5.605 20 C -0.221 4.221 21 H 0.080 0.920 22 C -0.008 4.008 23 N -0.919 5.919 24 Si 0.914 3.086 25 H -0.289 1.289 26 H -0.290 1.290 27 H -0.281 1.281 28 C 0.112 3.888 29 C 0.099 3.901 30 H 0.061 0.939 31 H 0.066 0.934 32 H 0.070 0.930 33 H 0.052 0.948 34 H 0.048 0.952 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.054 0.946 38 H 0.063 0.937 39 H 0.060 0.940 40 H 0.402 0.598 41 H 0.103 0.897 42 H 0.103 0.897 43 H 0.106 0.894 44 H 0.056 0.944 45 H 0.071 0.929 46 H 0.254 0.746 47 H 0.042 0.958 48 H 0.040 0.960 49 H 0.085 0.915 50 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.523 -5.980 -26.294 31.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.021 4.021 3 O -0.271 6.271 4 C 0.015 3.985 5 H 0.106 0.894 6 C -0.156 4.156 7 C -0.207 4.207 8 C 0.276 3.724 9 O -0.392 6.392 10 N -0.374 5.374 11 C 0.028 3.972 12 H 0.131 0.869 13 C -0.208 4.208 14 C 0.301 3.699 15 O -0.381 6.381 16 N -0.341 5.341 17 C -0.004 4.004 18 C 0.027 3.973 19 N -0.331 5.331 20 C -0.348 4.348 21 H 0.098 0.902 22 C -0.205 4.205 23 N -0.566 5.566 24 Si 0.744 3.256 25 H -0.216 1.216 26 H -0.216 1.216 27 H -0.206 1.206 28 C -0.015 4.015 29 C -0.026 4.026 30 H 0.081 0.919 31 H 0.085 0.915 32 H 0.089 0.911 33 H 0.071 0.929 34 H 0.066 0.934 35 H 0.098 0.902 36 H 0.100 0.900 37 H 0.073 0.927 38 H 0.082 0.918 39 H 0.079 0.921 40 H 0.237 0.763 41 H 0.121 0.879 42 H 0.122 0.878 43 H 0.124 0.876 44 H 0.074 0.926 45 H 0.089 0.911 46 H 0.064 0.936 47 H 0.060 0.940 48 H 0.057 0.943 49 H 0.103 0.897 50 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -15.890 -5.436 -24.857 29.999 hybrid contribution 1.273 -0.050 0.353 1.322 sum -14.617 -5.486 -24.505 29.056 Atomic orbital electron populations 1.21712 0.93396 1.02302 1.03264 1.22585 0.96084 0.83388 1.00045 1.88009 1.18211 1.26925 1.93977 1.22072 0.84117 1.00746 0.91561 0.89419 1.21618 1.01418 0.96158 0.96358 1.21723 1.02647 1.01858 0.94427 1.21499 0.82334 0.76163 0.92391 1.90752 1.51705 1.47593 1.49109 1.46002 1.07867 1.75610 1.07882 1.21825 0.95942 0.96386 0.83090 0.86873 1.22823 0.99308 0.97761 1.00935 1.20600 0.84218 0.81772 0.83296 1.90795 1.72653 1.38742 1.35894 1.48504 1.26092 1.21621 1.37917 1.24084 0.81933 0.99178 0.95228 1.22785 0.86873 0.98487 0.89165 1.45711 1.09063 1.75418 1.02936 1.18981 0.89441 1.37540 0.88878 0.90194 1.24811 0.97343 1.01726 0.96621 1.69828 1.24087 1.49385 1.13277 0.86099 0.81481 0.77486 0.80555 1.21596 1.21637 1.20622 1.22912 0.94186 0.96106 0.88300 1.22203 0.91673 0.96248 0.92436 0.91941 0.91506 0.91069 0.92929 0.93368 0.90166 0.90031 0.92698 0.91768 0.92101 0.76277 0.87882 0.87830 0.87640 0.92637 0.91106 0.93630 0.94000 0.94258 0.89663 0.91016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 10.28 37.16 0.38 -0.59 16 2 C 0.06 0.41 6.40 37.16 0.24 0.64 16 3 O -0.35 -3.23 9.16 -55.14 -0.50 -3.73 16 4 C 0.08 0.52 2.52 -27.89 -0.07 0.45 16 5 H 0.09 0.38 7.82 -51.93 -0.41 -0.02 16 6 C -0.12 -0.62 5.59 -26.73 -0.15 -0.77 16 7 C -0.15 -0.67 9.76 37.16 0.36 -0.30 16 8 C 0.49 4.57 7.18 -10.99 -0.08 4.49 16 9 O -0.52 -7.22 16.11 -14.36 -0.23 -7.45 16 10 N -0.72 -5.06 5.01 -52.22 -0.26 -5.32 16 11 C 0.13 1.28 3.53 -66.30 -0.23 1.05 16 12 H 0.11 1.26 7.54 -51.93 -0.39 0.87 16 13 C -0.17 -2.00 6.59 -26.74 -0.18 -2.18 16 14 C 0.52 8.75 7.42 -10.86 -0.08 8.67 16 15 O -0.51 -11.37 14.60 5.56 0.08 -11.29 16 16 N -0.61 -9.23 3.16 -166.64 -0.53 -9.76 16 17 C 0.10 1.87 4.81 -70.15 -0.34 1.53 16 18 C 0.15 3.84 6.90 -2.83 -0.02 3.82 16 19 N -0.60 -16.38 3.70 -177.89 -0.66 -17.04 16 20 C -0.22 -6.45 10.70 -15.06 -0.16 -6.61 16 21 H 0.08 2.24 7.83 -52.49 -0.41 1.83 16 22 C -0.01 -0.25 5.50 -17.43 -0.10 -0.34 16 23 N -0.92 -28.36 11.39 55.49 0.63 -27.72 16 24 Si 0.91 22.81 29.55 -169.99 -5.02 17.79 16 25 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 26 H -0.29 -7.24 7.11 56.52 0.40 -6.83 16 27 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 28 C 0.11 2.43 8.43 -2.97 -0.03 2.41 16 29 C 0.10 0.96 7.08 -3.12 -0.02 0.94 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.05 0.25 8.13 -51.93 -0.42 -0.17 16 35 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.08 0.27 7.42 -51.93 -0.39 -0.11 16 37 H 0.05 0.19 8.14 -51.93 -0.42 -0.23 16 38 H 0.06 0.35 7.95 -51.93 -0.41 -0.06 16 39 H 0.06 0.24 8.14 -51.93 -0.42 -0.19 16 40 H 0.40 1.56 7.79 -40.82 -0.32 1.24 16 41 H 0.10 1.06 8.08 -51.93 -0.42 0.64 16 42 H 0.10 1.32 8.14 -51.93 -0.42 0.90 16 43 H 0.11 1.80 8.14 -51.93 -0.42 1.38 16 44 H 0.06 1.55 5.75 -51.93 -0.30 1.25 16 45 H 0.07 1.93 7.16 -51.93 -0.37 1.55 16 46 H 0.25 7.55 8.31 -40.82 -0.34 7.21 16 47 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 48 H 0.04 0.91 7.22 -51.93 -0.38 0.53 16 49 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 50 H 0.07 0.52 7.80 -51.93 -0.40 0.11 16 LS Contribution 405.06 15.07 6.10 6.10 Total: -1.00 -38.43 405.06 -9.26 -47.69 By element: Atomic # 1 Polarization: 5.94 SS G_CDS: -8.40 Total: -2.47 kcal Atomic # 6 Polarization: 13.68 SS G_CDS: -0.47 Total: 13.21 kcal Atomic # 7 Polarization: -59.03 SS G_CDS: -0.81 Total: -59.84 kcal Atomic # 8 Polarization: -21.83 SS G_CDS: -0.66 Total: -22.48 kcal Atomic # 14 Polarization: 22.81 SS G_CDS: -5.02 Total: 17.79 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -38.43 -9.26 -47.69 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108513782.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.368 kcal (2) G-P(sol) polarization free energy of solvation -38.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds