Wall clock time and date at job start Tue Mar 31 2020 22:44:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53006 * 109.46651 * 2 1 4 4 C 1.52998 * 109.46972 * 180.02562 * 3 2 1 5 5 O 1.42896 * 109.47073 * 179.97438 * 4 3 2 6 6 C 1.42907 * 113.99805 * 179.97438 * 5 4 3 7 7 C 1.50699 * 109.46936 * 180.02562 * 6 5 4 8 8 O 1.21285 * 119.99989 * 359.97438 * 7 6 5 9 9 N 1.34776 * 120.00215 * 179.97438 * 7 6 5 10 10 C 1.46499 * 120.00197 * 179.97438 * 9 7 6 11 11 H 1.08999 * 110.88678 * 31.19448 * 10 9 7 12 12 C 1.54619 * 110.97234 * 267.38078 * 10 9 7 13 13 C 1.51281 * 104.19775 * 266.68062 * 12 10 9 14 14 O 1.21284 * 124.94206 * 163.78189 * 13 12 10 15 15 N 1.34413 * 110.11648 * 343.74848 * 13 12 10 16 16 C 1.46497 * 124.35463 * 179.59595 * 15 13 12 17 17 C 1.53948 * 113.74361 * 38.73374 * 16 15 13 18 18 N 1.47807 * 86.04109 * 222.09084 * 17 16 15 19 19 C 1.36938 * 134.45850 * 204.64766 * 18 17 16 20 20 H 1.07996 * 120.00188 * 179.86754 * 19 18 17 21 21 C 1.38813 * 119.99788 * 359.86312 * 19 18 17 22 22 N 1.31618 * 120.00006 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00024 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.46951 * 90.00129 * 23 21 19 25 25 H 1.48497 * 109.47230 * 209.99537 * 23 21 19 26 26 H 1.48497 * 109.47062 * 330.00251 * 23 21 19 27 27 C 1.47581 * 91.05213 * 24.54730 * 18 17 16 28 28 C 1.46768 * 111.30156 * 359.58884 * 15 13 12 29 29 H 1.08998 * 109.46856 * 60.00350 * 1 2 3 30 30 H 1.08998 * 109.46525 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.46875 * 299.99603 * 1 2 3 32 32 H 1.08996 * 109.46875 * 240.00397 * 2 1 3 33 33 H 1.08992 * 109.47183 * 119.99941 * 2 1 3 34 34 H 1.08995 * 109.46930 * 60.00068 * 3 2 1 35 35 H 1.09004 * 109.46863 * 299.99725 * 3 2 1 36 36 H 1.09008 * 109.47427 * 59.99866 * 4 3 2 37 37 H 1.09004 * 109.47209 * 300.00214 * 4 3 2 38 38 H 1.09001 * 109.47042 * 60.00008 * 6 5 4 39 39 H 1.08996 * 109.46843 * 299.99642 * 6 5 4 40 40 H 0.97006 * 119.99730 * 0.02562 * 9 7 6 41 41 H 1.09007 * 110.48907 * 25.35700 * 12 10 9 42 42 H 1.09001 * 110.48711 * 147.86895 * 12 10 9 43 43 H 1.08993 * 112.94955 * 170.33168 * 16 15 13 44 44 H 1.08997 * 113.76661 * 336.35809 * 17 16 15 45 45 H 1.09006 * 113.76751 * 107.74556 * 17 16 15 46 46 H 0.97003 * 120.00016 * 180.02562 * 22 21 19 47 47 H 1.08997 * 113.77393 * 221.14980 * 27 18 17 48 48 H 1.09001 * 113.76664 * 89.75581 * 27 18 17 49 49 H 1.09000 * 110.25007 * 258.01877 * 28 15 13 50 50 H 1.09004 * 110.24485 * 136.01583 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4427 -0.0006 5 8 4.0462 2.7899 -0.0012 6 6 5.4708 2.9028 -0.0013 7 6 5.8593 4.3589 -0.0013 8 8 5.0007 5.2156 -0.0018 9 7 7.1607 4.7092 -0.0008 10 6 7.5384 6.1246 -0.0014 11 1 6.7966 6.7250 0.5253 12 6 7.7455 6.6415 -1.4438 13 6 9.2275 6.4656 -1.6918 14 8 9.7565 6.4866 -2.7830 15 7 9.8727 6.2832 -0.5269 16 6 11.3174 6.0729 -0.4061 17 6 12.1515 6.9274 -1.3778 18 7 12.9659 5.7116 -1.5860 19 6 14.2548 5.4773 -1.9848 20 1 14.6219 4.4642 -2.0574 21 6 15.0895 6.5419 -2.2960 22 7 14.6422 7.7766 -2.2072 23 14 16.8475 6.2223 -2.8407 24 1 16.8897 6.0801 -4.3183 25 1 17.7081 7.3600 -2.4282 26 1 17.3420 4.9728 -2.2088 27 6 11.8337 4.8522 -1.1893 28 6 8.9438 6.3221 0.6088 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 1.6766 1.9563 0.8900 35 1 1.6766 1.9564 -0.8900 36 1 3.9330 0.9290 -0.8909 37 1 3.9337 0.9287 0.8891 38 1 5.8736 2.4189 -0.8911 39 1 5.8735 2.4198 0.8889 40 1 7.8474 4.0239 -0.0009 41 1 7.1672 6.0451 -2.1496 42 1 7.4668 7.6928 -1.5161 43 1 11.6680 6.1129 0.6252 44 1 11.6032 7.2460 -2.2643 45 1 12.6913 7.7418 -0.8944 46 1 15.2254 8.5205 -2.4249 47 1 12.1201 4.0127 -0.5558 48 1 11.1918 4.5599 -2.0204 49 1 9.0041 7.2867 1.1127 50 1 9.1683 5.5160 1.3075 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108526086.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:44:21 Heat of formation + Delta-G solvation = -56.993704 kcal Electronic energy + Delta-G solvation = -29190.691691 eV Core-core repulsion = 25027.143568 eV Total energy + Delta-G solvation = -4163.548124 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.82355 -39.69825 -38.19568 -37.23041 -36.36368 -35.32418 -34.00717 -32.23103 -30.81688 -29.92723 -28.03201 -27.50842 -26.75196 -24.75873 -23.74018 -23.43920 -22.09223 -21.55180 -20.87074 -20.38120 -18.32064 -17.63332 -17.30294 -16.96647 -16.83284 -16.45761 -16.25793 -15.72996 -15.18023 -15.01172 -14.82883 -14.62710 -14.32785 -13.94810 -13.85336 -13.60724 -13.45344 -13.34754 -13.18392 -12.80781 -12.58939 -12.33872 -11.98798 -11.92789 -11.81269 -11.72258 -11.56330 -11.43172 -11.39252 -11.36123 -11.10393 -10.86120 -10.70746 -10.22755 -10.11038 -10.06132 -9.99858 -9.63874 -9.51548 -9.17592 -8.67476 -8.20366 -6.83098 -5.73500 -3.05688 2.29462 2.39951 2.92701 3.23249 3.41483 3.46339 3.47751 3.51533 4.20756 4.38476 4.41632 4.44428 4.50062 4.56715 4.65705 4.71470 4.73796 4.76326 4.85751 4.94118 5.02347 5.12940 5.22224 5.33957 5.34815 5.35588 5.40475 5.44429 5.52243 5.56836 5.64280 5.66431 5.69525 5.77889 5.83417 5.85440 6.13747 6.25349 6.48540 6.55317 6.63133 6.85457 7.14938 7.27858 7.48085 7.57561 7.62023 7.90234 7.99874 8.55233 9.06971 9.73373 10.62137 11.43668 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.023974 B = 0.001773 C = 0.001703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.674475 B =15786.514665 C =16435.249926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.122 4.122 3 C -0.119 4.119 4 C 0.060 3.940 5 O -0.364 6.364 6 C 0.044 3.956 7 C 0.518 3.482 8 O -0.516 6.516 9 N -0.720 5.720 10 C 0.135 3.865 11 H 0.118 0.882 12 C -0.168 4.168 13 C 0.512 3.488 14 O -0.509 6.509 15 N -0.610 5.610 16 C 0.098 3.902 17 C 0.152 3.848 18 N -0.604 5.604 19 C -0.222 4.222 20 H 0.080 0.920 21 C -0.007 4.007 22 N -0.919 5.919 23 Si 0.913 3.087 24 H -0.289 1.289 25 H -0.290 1.290 26 H -0.281 1.281 27 C 0.112 3.888 28 C 0.095 3.905 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.051 0.949 37 H 0.051 0.949 38 H 0.082 0.918 39 H 0.081 0.919 40 H 0.405 0.595 41 H 0.100 0.900 42 H 0.112 0.888 43 H 0.105 0.895 44 H 0.056 0.944 45 H 0.070 0.930 46 H 0.254 0.746 47 H 0.041 0.959 48 H 0.039 0.961 49 H 0.087 0.913 50 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.641 -12.397 10.267 29.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.159 4.159 3 C -0.157 4.157 4 C -0.017 4.017 5 O -0.282 6.282 6 C -0.036 4.036 7 C 0.303 3.697 8 O -0.390 6.390 9 N -0.374 5.374 10 C 0.030 3.970 11 H 0.136 0.864 12 C -0.209 4.209 13 C 0.298 3.702 14 O -0.384 6.384 15 N -0.345 5.345 16 C -0.004 4.004 17 C 0.026 3.974 18 N -0.331 5.331 19 C -0.350 4.350 20 H 0.098 0.902 21 C -0.204 4.204 22 N -0.565 5.565 23 Si 0.743 3.257 24 H -0.216 1.216 25 H -0.216 1.216 26 H -0.206 1.206 27 C -0.015 4.015 28 C -0.029 4.029 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.070 0.930 37 H 0.069 0.931 38 H 0.100 0.900 39 H 0.099 0.901 40 H 0.240 0.760 41 H 0.119 0.881 42 H 0.130 0.870 43 H 0.123 0.877 44 H 0.074 0.926 45 H 0.088 0.912 46 H 0.064 0.936 47 H 0.059 0.941 48 H 0.056 0.944 49 H 0.105 0.895 50 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -24.698 -11.518 9.591 28.890 hybrid contribution 1.539 -0.734 -0.387 1.748 sum -23.159 -12.253 9.205 27.770 Atomic orbital electron populations 1.21755 0.95313 1.01766 1.02143 1.21446 0.96380 0.95890 1.02234 1.21548 0.93071 0.97322 1.03766 1.22626 0.95550 0.83162 1.00359 1.87999 1.18335 1.26433 1.95469 1.22183 0.84131 0.94411 1.02884 1.20242 0.82491 0.90681 0.76298 1.90746 1.49222 1.51682 1.47388 1.45895 1.07192 1.08253 1.76104 1.21858 0.96634 0.82310 0.96188 0.86393 1.22840 0.95610 1.04590 0.97908 1.20684 0.88864 0.76387 0.84234 1.90792 1.72600 1.49517 1.25470 1.48546 1.07848 1.71669 1.06455 1.24058 0.75235 1.00248 1.00884 1.22788 0.88305 0.91500 0.94758 1.45698 1.06355 1.01967 1.79052 1.18979 0.84450 0.92861 1.38671 0.90223 1.24796 0.98509 0.95202 1.01864 1.69828 1.35306 0.97382 1.54021 0.86108 0.84085 0.77007 0.78471 1.21602 1.21616 1.20626 1.22910 0.89676 0.93553 0.95379 1.22355 0.87284 1.03254 0.90043 0.92524 0.92580 0.92559 0.91784 0.91821 0.90926 0.90892 0.93049 0.93094 0.90021 0.90089 0.76026 0.88120 0.86994 0.87662 0.92595 0.91158 0.93633 0.94064 0.94385 0.89540 0.89807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.70 9.91 37.16 0.37 -0.33 16 2 C -0.12 -0.58 5.94 -26.72 -0.16 -0.74 16 3 C -0.12 -0.77 5.58 -26.73 -0.15 -0.91 16 4 C 0.06 0.40 5.94 37.16 0.22 0.62 16 5 O -0.36 -3.65 9.88 -55.14 -0.54 -4.20 16 6 C 0.04 0.33 6.42 36.01 0.23 0.56 16 7 C 0.52 5.24 7.91 -10.99 -0.09 5.16 16 8 O -0.52 -7.44 16.14 -14.36 -0.23 -7.67 16 9 N -0.72 -5.97 5.12 -52.23 -0.27 -6.23 16 10 C 0.14 1.24 3.53 -66.30 -0.23 1.01 16 11 H 0.12 1.04 7.54 -51.93 -0.39 0.65 16 12 C -0.17 -1.97 6.58 -26.75 -0.18 -2.15 16 13 C 0.51 8.39 7.42 -10.86 -0.08 8.31 16 14 O -0.51 -11.20 14.61 5.55 0.08 -11.11 16 15 N -0.61 -8.86 3.15 -166.62 -0.53 -9.38 16 16 C 0.10 1.80 4.81 -70.13 -0.34 1.47 16 17 C 0.15 3.76 6.90 -2.84 -0.02 3.74 16 18 N -0.60 -16.05 3.70 -177.85 -0.66 -16.71 16 19 C -0.22 -6.40 10.70 -15.06 -0.16 -6.56 16 20 H 0.08 2.20 7.83 -52.49 -0.41 1.79 16 21 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 22 N -0.92 -28.01 11.39 55.49 0.63 -27.38 16 23 Si 0.91 22.56 29.55 -169.99 -5.02 17.53 16 24 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 25 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 26 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 27 C 0.11 2.35 8.44 -2.96 -0.02 2.32 16 28 C 0.10 0.88 6.97 -3.12 -0.02 0.86 16 29 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 30 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.06 0.26 8.14 -51.93 -0.42 -0.17 16 32 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 33 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 34 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.05 0.29 8.14 -51.92 -0.42 -0.13 16 37 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 38 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.40 2.63 8.67 -40.82 -0.35 2.27 16 41 H 0.10 1.23 8.09 -51.93 -0.42 0.81 16 42 H 0.11 1.18 8.14 -51.93 -0.42 0.75 16 43 H 0.11 1.74 8.14 -51.93 -0.42 1.32 16 44 H 0.06 1.53 5.72 -51.93 -0.30 1.24 16 45 H 0.07 1.88 7.17 -51.93 -0.37 1.51 16 46 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 47 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 48 H 0.04 0.85 7.25 -51.93 -0.38 0.47 16 49 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 50 H 0.08 0.63 8.08 -51.93 -0.42 0.21 16 LS Contribution 408.19 15.07 6.15 6.15 Total: -1.00 -38.24 408.19 -9.63 -47.87 By element: Atomic # 1 Polarization: 6.60 SS G_CDS: -8.52 Total: -1.91 kcal Atomic # 6 Polarization: 13.78 SS G_CDS: -0.73 Total: 13.05 kcal Atomic # 7 Polarization: -58.89 SS G_CDS: -0.82 Total: -59.71 kcal Atomic # 8 Polarization: -22.29 SS G_CDS: -0.70 Total: -22.98 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -5.02 Total: 17.53 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -38.24 -9.63 -47.87 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108526086.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.122 kcal (2) G-P(sol) polarization free energy of solvation -38.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds