Wall clock time and date at job start Tue Mar 31 2020 22:44:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53006 * 109.46651 * 2 1 4 4 C 1.52998 * 109.46972 * 180.02562 * 3 2 1 5 5 O 1.42896 * 109.47073 * 179.97438 * 4 3 2 6 6 C 1.42907 * 113.99805 * 179.97438 * 5 4 3 7 7 C 1.50699 * 109.46936 * 180.02562 * 6 5 4 8 8 O 1.21285 * 119.99989 * 359.97438 * 7 6 5 9 9 N 1.34776 * 120.00215 * 179.97438 * 7 6 5 10 10 C 1.46499 * 120.00197 * 179.97438 * 9 7 6 11 11 H 1.08999 * 110.88678 * 31.19448 * 10 9 7 12 12 C 1.54619 * 110.97234 * 267.38078 * 10 9 7 13 13 C 1.51281 * 104.19775 * 266.68062 * 12 10 9 14 14 O 1.21284 * 124.94206 * 163.78189 * 13 12 10 15 15 N 1.34413 * 110.11648 * 343.74848 * 13 12 10 16 16 C 1.46497 * 124.35463 * 179.59595 * 15 13 12 17 17 C 1.53948 * 113.74361 * 38.73374 * 16 15 13 18 18 N 1.47807 * 86.04109 * 222.09084 * 17 16 15 19 19 C 1.36938 * 134.45850 * 204.64766 * 18 17 16 20 20 H 1.07996 * 120.00188 * 179.86754 * 19 18 17 21 21 C 1.38813 * 119.99788 * 359.86312 * 19 18 17 22 22 N 1.31618 * 120.00006 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00024 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.46951 * 90.00129 * 23 21 19 25 25 H 1.48497 * 109.47230 * 209.99537 * 23 21 19 26 26 H 1.48497 * 109.47062 * 330.00251 * 23 21 19 27 27 C 1.47581 * 91.05213 * 24.54730 * 18 17 16 28 28 C 1.46768 * 111.30156 * 359.58884 * 15 13 12 29 29 H 1.08998 * 109.46856 * 60.00350 * 1 2 3 30 30 H 1.08998 * 109.46525 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.46875 * 299.99603 * 1 2 3 32 32 H 1.08996 * 109.46875 * 240.00397 * 2 1 3 33 33 H 1.08992 * 109.47183 * 119.99941 * 2 1 3 34 34 H 1.08995 * 109.46930 * 60.00068 * 3 2 1 35 35 H 1.09004 * 109.46863 * 299.99725 * 3 2 1 36 36 H 1.09008 * 109.47427 * 59.99866 * 4 3 2 37 37 H 1.09004 * 109.47209 * 300.00214 * 4 3 2 38 38 H 1.09001 * 109.47042 * 60.00008 * 6 5 4 39 39 H 1.08996 * 109.46843 * 299.99642 * 6 5 4 40 40 H 0.97006 * 119.99730 * 0.02562 * 9 7 6 41 41 H 1.09007 * 110.48907 * 25.35700 * 12 10 9 42 42 H 1.09001 * 110.48711 * 147.86895 * 12 10 9 43 43 H 1.08993 * 112.94955 * 170.33168 * 16 15 13 44 44 H 1.08997 * 113.76661 * 336.35809 * 17 16 15 45 45 H 1.09006 * 113.76751 * 107.74556 * 17 16 15 46 46 H 0.97003 * 120.00016 * 180.02562 * 22 21 19 47 47 H 1.08997 * 113.77393 * 221.14980 * 27 18 17 48 48 H 1.09001 * 113.76664 * 89.75581 * 27 18 17 49 49 H 1.09000 * 110.25007 * 258.01877 * 28 15 13 50 50 H 1.09004 * 110.24485 * 136.01583 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4427 -0.0006 5 8 4.0462 2.7899 -0.0012 6 6 5.4708 2.9028 -0.0013 7 6 5.8593 4.3589 -0.0013 8 8 5.0007 5.2156 -0.0018 9 7 7.1607 4.7092 -0.0008 10 6 7.5384 6.1246 -0.0014 11 1 6.7966 6.7250 0.5253 12 6 7.7455 6.6415 -1.4438 13 6 9.2275 6.4656 -1.6918 14 8 9.7565 6.4866 -2.7830 15 7 9.8727 6.2832 -0.5269 16 6 11.3174 6.0729 -0.4061 17 6 12.1515 6.9274 -1.3778 18 7 12.9659 5.7116 -1.5860 19 6 14.2548 5.4773 -1.9848 20 1 14.6219 4.4642 -2.0574 21 6 15.0895 6.5419 -2.2960 22 7 14.6422 7.7766 -2.2072 23 14 16.8475 6.2223 -2.8407 24 1 16.8897 6.0801 -4.3183 25 1 17.7081 7.3600 -2.4282 26 1 17.3420 4.9728 -2.2088 27 6 11.8337 4.8522 -1.1893 28 6 8.9438 6.3221 0.6088 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 1.6766 1.9563 0.8900 35 1 1.6766 1.9564 -0.8900 36 1 3.9330 0.9290 -0.8909 37 1 3.9337 0.9287 0.8891 38 1 5.8736 2.4189 -0.8911 39 1 5.8735 2.4198 0.8889 40 1 7.8474 4.0239 -0.0009 41 1 7.1672 6.0451 -2.1496 42 1 7.4668 7.6928 -1.5161 43 1 11.6680 6.1129 0.6252 44 1 11.6032 7.2460 -2.2643 45 1 12.6913 7.7418 -0.8944 46 1 15.2254 8.5205 -2.4249 47 1 12.1201 4.0127 -0.5558 48 1 11.1918 4.5599 -2.0204 49 1 9.0041 7.2867 1.1127 50 1 9.1683 5.5160 1.3075 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108526086.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:44:20 Heat of formation + Delta-G solvation = -84.794075 kcal Electronic energy + Delta-G solvation = -29191.897206 eV Core-core repulsion = 25027.143568 eV Total energy + Delta-G solvation = -4164.753638 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.93678 -40.65029 -39.06678 -38.67051 -37.55670 -35.78201 -35.12750 -34.13525 -31.97051 -30.54005 -29.23180 -28.81449 -27.70572 -26.59914 -25.22873 -24.17950 -22.92130 -22.11231 -22.03268 -21.57232 -19.73246 -18.79859 -18.34584 -18.07270 -17.70926 -17.49594 -17.25054 -16.86722 -16.34640 -16.21641 -15.97142 -15.62606 -15.39367 -15.21777 -14.99359 -14.63547 -14.44217 -14.20798 -14.16074 -13.88500 -13.63113 -13.41242 -13.34908 -13.16192 -12.87224 -12.81924 -12.75930 -12.67152 -12.46827 -12.38887 -12.00261 -11.95488 -11.88172 -11.85211 -11.51471 -11.51269 -11.06128 -10.88186 -10.66435 -10.62133 -10.14380 -9.55571 -8.93402 -7.92309 -5.26735 1.43194 1.46685 1.54201 1.55231 1.61963 1.77398 2.00212 2.48786 2.96022 3.25874 3.35728 3.46976 3.48296 3.75226 3.80588 3.86471 4.01156 4.10641 4.22609 4.25105 4.27119 4.28477 4.32015 4.44869 4.50512 4.53915 4.63292 4.69540 4.71012 4.79097 4.80556 4.88038 4.93364 4.94740 4.96315 5.04770 5.22536 5.23851 5.25842 5.36637 5.40210 5.46063 5.48807 5.86594 5.90392 6.10735 6.27463 6.50746 6.88447 7.19486 7.25941 7.58152 8.53535 9.24946 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.023974 B = 0.001773 C = 0.001703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.674475 B =15786.514665 C =16435.249926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.117 4.117 3 C -0.120 4.120 4 C 0.057 3.943 5 O -0.399 6.399 6 C 0.042 3.958 7 C 0.517 3.483 8 O -0.565 6.565 9 N -0.709 5.709 10 C 0.147 3.853 11 H 0.131 0.869 12 C -0.157 4.157 13 C 0.502 3.498 14 O -0.576 6.576 15 N -0.605 5.605 16 C 0.138 3.862 17 C 0.145 3.855 18 N -0.635 5.635 19 C -0.237 4.237 20 H 0.087 0.913 21 C -0.069 4.069 22 N -0.955 5.955 23 Si 0.983 3.017 24 H -0.292 1.292 25 H -0.291 1.291 26 H -0.261 1.261 27 C 0.115 3.885 28 C 0.097 3.903 29 H 0.051 0.949 30 H 0.063 0.937 31 H 0.054 0.946 32 H 0.069 0.931 33 H 0.072 0.928 34 H 0.063 0.937 35 H 0.058 0.942 36 H 0.062 0.938 37 H 0.068 0.932 38 H 0.101 0.899 39 H 0.113 0.887 40 H 0.417 0.583 41 H 0.095 0.905 42 H 0.126 0.874 43 H 0.138 0.862 44 H 0.020 0.980 45 H 0.040 0.960 46 H 0.248 0.752 47 H 0.072 0.928 48 H 0.023 0.977 49 H 0.110 0.890 50 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.106 -14.619 12.601 31.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.155 4.155 3 C -0.157 4.157 4 C -0.019 4.019 5 O -0.319 6.319 6 C -0.037 4.037 7 C 0.304 3.696 8 O -0.443 6.443 9 N -0.363 5.363 10 C 0.042 3.958 11 H 0.149 0.851 12 C -0.198 4.198 13 C 0.291 3.709 14 O -0.455 6.455 15 N -0.339 5.339 16 C 0.034 3.966 17 C 0.019 3.981 18 N -0.362 5.362 19 C -0.365 4.365 20 H 0.105 0.895 21 C -0.262 4.262 22 N -0.603 5.603 23 Si 0.811 3.189 24 H -0.219 1.219 25 H -0.217 1.217 26 H -0.185 1.185 27 C -0.011 4.011 28 C -0.025 4.025 29 H 0.070 0.930 30 H 0.082 0.918 31 H 0.073 0.927 32 H 0.087 0.913 33 H 0.091 0.909 34 H 0.081 0.919 35 H 0.077 0.923 36 H 0.080 0.920 37 H 0.087 0.913 38 H 0.119 0.881 39 H 0.131 0.869 40 H 0.254 0.746 41 H 0.114 0.886 42 H 0.144 0.856 43 H 0.156 0.844 44 H 0.038 0.962 45 H 0.058 0.942 46 H 0.057 0.943 47 H 0.090 0.910 48 H 0.041 0.959 49 H 0.128 0.872 50 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -25.192 -13.801 11.988 31.126 hybrid contribution 1.600 -0.063 -1.142 1.967 sum -23.592 -13.864 10.846 29.436 Atomic orbital electron populations 1.21776 0.95353 1.02191 1.01863 1.21423 0.96337 0.94822 1.02916 1.21555 0.93392 0.98168 1.02618 1.22772 0.95371 0.82121 1.01670 1.87956 1.19792 1.28322 1.95789 1.22348 0.83362 0.92698 1.05268 1.20762 0.82310 0.91514 0.75009 1.90729 1.50565 1.53164 1.49796 1.45825 1.07119 1.08239 1.75103 1.21795 0.96970 0.82977 0.94107 0.85105 1.22794 0.91666 1.05636 0.99750 1.21495 0.90766 0.75008 0.83602 1.90762 1.74261 1.52349 1.28140 1.48480 1.06942 1.70494 1.07959 1.23364 0.76938 0.95868 1.00443 1.22602 0.89086 0.91324 0.95103 1.46137 1.06910 1.04039 1.79103 1.19450 0.85905 0.93259 1.37875 0.89520 1.25717 1.02890 0.95004 1.02584 1.70046 1.36598 0.98170 1.55521 0.85015 0.78933 0.77431 0.77559 1.21919 1.21747 1.18545 1.22997 0.87714 0.94923 0.95433 1.22701 0.85479 1.05964 0.88356 0.92977 0.91779 0.92735 0.91253 0.90901 0.91861 0.92295 0.91999 0.91350 0.88112 0.86905 0.74623 0.88643 0.85641 0.84421 0.96203 0.94164 0.94312 0.90973 0.95897 0.87209 0.86497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.91 71.98 0.71 -0.57 16 2 C -0.12 -0.96 5.94 30.60 0.18 -0.78 16 3 C -0.12 -1.44 5.58 30.60 0.17 -1.27 16 4 C 0.06 0.66 5.94 71.98 0.43 1.08 16 5 O -0.40 -7.41 9.88 -129.94 -1.28 -8.69 16 6 C 0.04 0.52 6.42 71.24 0.46 0.98 16 7 C 0.52 9.29 7.91 87.66 0.69 9.98 16 8 O -0.56 -15.60 16.14 15.99 0.26 -15.34 16 9 N -0.71 -9.46 5.12 -437.54 -2.24 -11.70 16 10 C 0.15 2.23 3.53 46.05 0.16 2.39 16 11 H 0.13 1.85 7.54 -2.39 -0.02 1.83 16 12 C -0.16 -3.47 6.58 30.58 0.20 -3.27 16 13 C 0.50 16.34 7.42 87.90 0.65 16.99 16 14 O -0.58 -26.46 14.61 -3.04 -0.04 -26.50 16 15 N -0.61 -16.33 3.15 -799.66 -2.52 -18.85 16 16 C 0.14 4.83 4.81 46.75 0.22 5.05 16 17 C 0.15 7.38 6.90 86.44 0.60 7.98 16 18 N -0.64 -34.14 3.70 -716.61 -2.65 -36.79 16 19 C -0.24 -13.77 10.70 84.03 0.90 -12.87 16 20 H 0.09 4.76 7.83 -2.91 -0.02 4.73 16 21 C -0.07 -4.09 5.50 84.86 0.47 -3.62 16 22 N -0.95 -60.26 11.39 21.65 0.25 -60.01 16 23 Si 0.98 46.98 29.55 68.60 2.03 49.01 16 24 H -0.29 -13.97 7.11 99.48 0.71 -13.27 16 25 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 26 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 27 C 0.12 4.71 8.44 86.49 0.73 5.44 16 28 C 0.10 1.39 6.97 86.83 0.61 2.00 16 29 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 30 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 31 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 32 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 33 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 34 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 36 H 0.06 0.57 8.14 -2.38 -0.02 0.55 16 37 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 38 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 39 H 0.11 0.65 8.14 -2.39 -0.02 0.63 16 40 H 0.42 3.76 8.67 -92.70 -0.80 2.95 16 41 H 0.10 2.26 8.09 -2.38 -0.02 2.24 16 42 H 0.13 2.47 8.14 -2.39 -0.02 2.45 16 43 H 0.14 4.04 8.14 -2.39 -0.02 4.02 16 44 H 0.02 1.17 5.72 -2.39 -0.01 1.15 16 45 H 0.04 2.25 7.17 -2.38 -0.02 2.23 16 46 H 0.25 15.16 8.31 -92.71 -0.77 14.38 16 47 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 48 H 0.02 1.03 7.25 -2.39 -0.02 1.01 16 49 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 50 H 0.12 1.04 8.08 -2.38 -0.02 1.02 16 Total: -1.00 -89.51 408.19 1.10 -88.41 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: 0.13 Total: 10.96 kcal Atomic # 6 Polarization: 22.33 SS G_CDS: 7.18 Total: 29.51 kcal Atomic # 7 Polarization: -120.18 SS G_CDS: -7.17 Total: -127.35 kcal Atomic # 8 Polarization: -49.47 SS G_CDS: -1.07 Total: -50.54 kcal Atomic # 14 Polarization: 46.98 SS G_CDS: 2.03 Total: 49.01 kcal Total: -89.51 1.10 -88.41 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108526086.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.617 kcal (2) G-P(sol) polarization free energy of solvation -89.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds