Wall clock time and date at job start Tue Mar 31 2020 22:44:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47274 * 2 1 4 4 C 1.52998 * 109.46904 * 179.97438 * 3 2 1 5 5 O 1.42908 * 109.46958 * 179.97438 * 4 3 2 6 6 C 1.42897 * 113.99818 * 179.97438 * 5 4 3 7 7 C 1.50700 * 109.46660 * 180.02562 * 6 5 4 8 8 O 1.21282 * 120.00661 * 359.97438 * 7 6 5 9 9 N 1.34790 * 120.00010 * 180.02562 * 7 6 5 10 10 C 1.46499 * 120.00103 * 179.97438 * 9 7 6 11 11 H 1.08999 * 110.85757 * 322.66538 * 10 9 7 12 12 C 1.54628 * 110.96819 * 86.45167 * 10 9 7 13 13 C 1.51275 * 104.19635 * 93.35780 * 12 10 9 14 14 O 1.21281 * 124.94615 * 196.23224 * 13 12 10 15 15 N 1.34424 * 110.11780 * 16.25019 * 13 12 10 16 16 C 1.46500 * 124.35300 * 180.14254 * 15 13 12 17 17 C 1.53945 * 113.73764 * 36.69965 * 16 15 13 18 18 N 1.47585 * 86.11424 * 222.04756 * 17 16 15 19 19 C 1.36932 * 134.49117 * 204.64124 * 18 17 16 20 20 H 1.08007 * 120.00152 * 179.97438 * 19 18 17 21 21 C 1.38813 * 120.00220 * 0.02562 * 19 18 17 22 22 N 1.31610 * 119.99981 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 119.99892 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.46807 * 90.00487 * 23 21 19 25 25 H 1.48499 * 109.46819 * 209.99978 * 23 21 19 26 26 H 1.48498 * 109.47305 * 330.00126 * 23 21 19 27 27 C 1.47578 * 91.01429 * 24.64307 * 18 17 16 28 28 C 1.46768 * 111.29731 * 0.40742 * 15 13 12 29 29 H 1.08995 * 109.46797 * 300.00040 * 1 2 3 30 30 H 1.09002 * 109.46839 * 60.00166 * 1 2 3 31 31 H 1.09000 * 109.46959 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.46935 * 240.00113 * 2 1 3 33 33 H 1.09003 * 109.47058 * 120.00585 * 2 1 3 34 34 H 1.09004 * 109.47047 * 60.00182 * 3 2 1 35 35 H 1.08998 * 109.47104 * 300.00209 * 3 2 1 36 36 H 1.09000 * 109.47229 * 60.00747 * 4 3 2 37 37 H 1.08998 * 109.47440 * 300.00040 * 4 3 2 38 38 H 1.08996 * 109.47436 * 60.00610 * 6 5 4 39 39 H 1.08996 * 109.47171 * 299.99976 * 6 5 4 40 40 H 0.96997 * 119.99339 * 0.02562 * 9 7 6 41 41 H 1.09002 * 110.48704 * 334.68086 * 12 10 9 42 42 H 1.08996 * 110.59997 * 212.09269 * 12 10 9 43 43 H 1.09001 * 112.94181 * 168.43123 * 16 15 13 44 44 H 1.08997 * 113.77439 * 336.34790 * 17 16 15 45 45 H 1.08998 * 113.76804 * 107.75285 * 17 16 15 46 46 H 0.97002 * 120.00274 * 180.02562 * 22 21 19 47 47 H 1.09003 * 113.76849 * 221.06015 * 27 18 17 48 48 H 1.09004 * 113.77238 * 89.66051 * 27 18 17 49 49 H 1.09003 * 110.24577 * 101.98147 * 28 15 13 50 50 H 1.08999 * 110.24371 * 223.98527 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 8 4.0464 2.7897 0.0000 6 6 5.4709 2.9025 0.0012 7 6 5.8595 4.3585 0.0010 8 8 5.0011 5.2153 -0.0004 9 7 7.1611 4.7087 0.0015 10 6 7.5389 6.1241 0.0008 11 1 6.8567 6.7075 -0.6176 12 6 7.5945 6.6827 1.4416 13 6 9.0421 6.5170 1.8481 14 8 9.4542 6.5701 2.9875 15 7 9.8055 6.3026 0.7626 16 6 11.2556 6.0973 0.7992 17 6 11.7367 5.2907 2.0190 18 7 12.8430 6.2642 2.1002 19 6 14.1108 6.2353 2.6169 20 1 14.7431 7.1080 2.5457 21 6 14.5838 5.0839 3.2314 22 7 13.8139 4.0199 3.3169 23 14 16.3135 5.0443 3.9356 24 1 16.2814 5.4887 5.3523 25 1 16.8458 3.6599 3.8631 26 1 17.1882 5.9527 3.1515 27 6 12.0342 7.2813 1.4008 28 6 9.0005 6.3068 -0.4646 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6767 1.9563 -0.8899 36 1 3.9337 0.9285 -0.8892 37 1 3.9330 0.9287 0.8908 38 1 5.8744 2.4184 -0.8881 39 1 5.8729 2.4196 0.8918 40 1 7.8476 4.0234 0.0015 41 1 6.9450 6.1056 2.0998 42 1 7.3123 7.7354 1.4559 43 1 11.6588 5.7436 -0.1497 44 1 11.0545 5.3293 2.8682 45 1 12.0595 4.2782 1.7767 46 1 14.1442 3.2154 3.7466 47 1 12.5943 7.8581 0.6647 48 1 11.4392 7.9047 2.0683 49 1 9.1141 7.2567 -0.9869 50 1 9.2960 5.4815 -1.1123 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108526087.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:44:25 Heat of formation + Delta-G solvation = -56.639694 kcal Electronic energy + Delta-G solvation = -29254.123841 eV Core-core repulsion = 25090.591069 eV Total energy + Delta-G solvation = -4163.532773 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.81334 -39.66657 -38.15891 -37.23353 -36.35589 -35.28873 -33.98424 -32.22741 -30.79762 -29.89596 -28.01134 -27.50845 -26.74219 -24.75049 -23.70314 -23.43812 -22.07346 -21.52019 -20.82784 -20.36939 -18.32799 -17.57312 -17.28345 -16.92308 -16.80924 -16.54527 -16.15689 -15.69603 -15.17768 -15.09432 -14.67931 -14.57384 -14.32883 -13.97589 -13.83819 -13.58087 -13.47733 -13.30964 -13.17333 -12.80974 -12.52502 -12.30000 -12.00205 -11.89961 -11.79879 -11.73116 -11.53064 -11.40903 -11.38070 -11.34597 -11.06854 -10.86483 -10.70178 -10.21583 -10.06400 -10.02081 -10.00326 -9.62849 -9.49616 -9.16500 -8.66635 -8.20670 -6.82860 -5.74133 -3.05838 2.33647 2.44035 2.93191 3.23375 3.41295 3.46410 3.47380 3.55673 4.20444 4.41227 4.43705 4.48033 4.50067 4.60604 4.69180 4.74993 4.76390 4.80935 4.90113 4.98765 5.03073 5.16546 5.23139 5.36051 5.37361 5.39011 5.39619 5.47636 5.52025 5.56959 5.60693 5.69408 5.74410 5.81351 5.82505 5.88721 6.16804 6.27849 6.50474 6.57331 6.67408 6.86101 7.18820 7.26863 7.48049 7.56860 7.62687 7.94173 7.99897 8.55804 9.07115 9.73123 10.62251 11.43149 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.016981 B = 0.001910 C = 0.001774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1648.457917 B =14653.787177 C =15778.558738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.122 4.122 3 C -0.119 4.119 4 C 0.060 3.940 5 O -0.364 6.364 6 C 0.044 3.956 7 C 0.518 3.482 8 O -0.517 6.517 9 N -0.720 5.720 10 C 0.137 3.863 11 H 0.115 0.885 12 C -0.167 4.167 13 C 0.512 3.488 14 O -0.509 6.509 15 N -0.610 5.610 16 C 0.098 3.902 17 C 0.152 3.848 18 N -0.604 5.604 19 C -0.220 4.220 20 H 0.080 0.920 21 C -0.008 4.008 22 N -0.920 5.920 23 Si 0.913 3.087 24 H -0.289 1.289 25 H -0.290 1.290 26 H -0.280 1.280 27 C 0.111 3.889 28 C 0.096 3.904 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.063 0.937 33 H 0.064 0.936 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.051 0.949 37 H 0.052 0.948 38 H 0.081 0.919 39 H 0.083 0.917 40 H 0.406 0.594 41 H 0.101 0.899 42 H 0.111 0.889 43 H 0.105 0.895 44 H 0.058 0.942 45 H 0.069 0.931 46 H 0.253 0.747 47 H 0.042 0.958 48 H 0.039 0.961 49 H 0.086 0.914 50 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.417 -5.787 -13.170 26.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.160 4.160 3 C -0.157 4.157 4 C -0.017 4.017 5 O -0.283 6.283 6 C -0.036 4.036 7 C 0.303 3.697 8 O -0.391 6.391 9 N -0.375 5.375 10 C 0.032 3.968 11 H 0.133 0.867 12 C -0.209 4.209 13 C 0.299 3.701 14 O -0.383 6.383 15 N -0.345 5.345 16 C -0.004 4.004 17 C 0.026 3.974 18 N -0.331 5.331 19 C -0.348 4.348 20 H 0.098 0.902 21 C -0.204 4.204 22 N -0.567 5.567 23 Si 0.743 3.257 24 H -0.216 1.216 25 H -0.216 1.216 26 H -0.206 1.206 27 C -0.017 4.017 28 C -0.028 4.028 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.091 0.909 35 H 0.090 0.910 36 H 0.069 0.931 37 H 0.070 0.930 38 H 0.099 0.901 39 H 0.101 0.899 40 H 0.241 0.759 41 H 0.119 0.881 42 H 0.129 0.871 43 H 0.123 0.877 44 H 0.076 0.924 45 H 0.088 0.912 46 H 0.063 0.937 47 H 0.061 0.939 48 H 0.057 0.943 49 H 0.104 0.896 50 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -22.582 -5.145 -12.398 26.270 hybrid contribution 1.510 -0.611 0.473 1.696 sum -21.072 -5.756 -11.925 24.887 Atomic orbital electron populations 1.21753 0.95333 1.01753 1.02123 1.21447 0.96358 0.95908 1.02256 1.21545 0.93099 0.97307 1.03737 1.22626 0.95514 0.83177 1.00393 1.87994 1.18358 1.26429 1.95479 1.22185 0.84100 0.94402 1.02958 1.20240 0.82462 0.90690 0.76287 1.90742 1.49257 1.51684 1.47417 1.45915 1.07259 1.08195 1.76137 1.21829 0.96007 0.82225 0.96757 0.86735 1.22827 0.96197 1.04298 0.97545 1.20698 0.88087 0.76373 0.84972 1.90785 1.77921 1.49462 1.20171 1.48545 1.08093 1.71435 1.06470 1.24065 0.74888 1.00167 1.01314 1.22773 0.87562 0.94841 0.92222 1.45659 1.09827 1.09938 1.67644 1.18994 0.86842 0.98199 1.30756 0.90200 1.24789 0.98480 0.96131 1.01028 1.69822 1.35632 1.02850 1.48374 0.86103 0.83659 0.76808 0.79087 1.21601 1.21649 1.20605 1.22931 0.91819 0.92844 0.94064 1.22326 0.88771 1.03226 0.88499 0.92528 0.92580 0.92586 0.91823 0.91759 0.90899 0.90957 0.93106 0.92997 0.90077 0.89935 0.75913 0.88062 0.87123 0.87698 0.92423 0.91241 0.93689 0.93949 0.94342 0.89613 0.89759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.75 9.91 37.16 0.37 -0.38 16 2 C -0.12 -0.64 5.93 -26.73 -0.16 -0.80 16 3 C -0.12 -0.81 5.58 -26.73 -0.15 -0.96 16 4 C 0.06 0.43 5.94 37.16 0.22 0.65 16 5 O -0.36 -3.83 9.88 -55.14 -0.54 -4.38 16 6 C 0.04 0.35 6.42 36.01 0.23 0.59 16 7 C 0.52 5.50 7.91 -10.98 -0.09 5.41 16 8 O -0.52 -7.63 16.24 -14.35 -0.23 -7.86 16 9 N -0.72 -6.30 5.16 -52.22 -0.27 -6.57 16 10 C 0.14 1.27 3.43 -66.30 -0.23 1.05 16 11 H 0.11 0.99 7.72 -51.93 -0.40 0.59 16 12 C -0.17 -2.00 6.58 -26.75 -0.18 -2.18 16 13 C 0.51 8.48 7.44 -10.86 -0.08 8.39 16 14 O -0.51 -11.27 14.63 5.56 0.08 -11.19 16 15 N -0.61 -8.88 3.15 -166.64 -0.53 -9.40 16 16 C 0.10 1.80 4.82 -70.15 -0.34 1.46 16 17 C 0.15 3.71 6.88 -2.97 -0.02 3.69 16 18 N -0.60 -16.11 3.70 -178.10 -0.66 -16.77 16 19 C -0.22 -6.37 10.70 -15.06 -0.16 -6.53 16 20 H 0.08 2.22 7.83 -52.48 -0.41 1.81 16 21 C -0.01 -0.23 5.50 -17.43 -0.10 -0.32 16 22 N -0.92 -27.86 11.38 55.49 0.63 -27.22 16 23 Si 0.91 22.55 29.55 -169.99 -5.02 17.52 16 24 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 25 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 26 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 27 C 0.11 2.37 8.45 -2.98 -0.03 2.35 16 28 C 0.10 0.88 6.96 -3.12 -0.02 0.86 16 29 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 30 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 33 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 37 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 38 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.41 2.86 8.57 -40.82 -0.35 2.51 16 41 H 0.10 1.31 8.09 -51.93 -0.42 0.89 16 42 H 0.11 1.16 8.14 -51.93 -0.42 0.74 16 43 H 0.11 1.72 8.14 -51.93 -0.42 1.30 16 44 H 0.06 1.57 5.60 -51.93 -0.29 1.28 16 45 H 0.07 1.83 7.15 -51.93 -0.37 1.45 16 46 H 0.25 7.40 8.31 -40.82 -0.34 7.06 16 47 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 48 H 0.04 0.88 7.39 -51.93 -0.38 0.50 16 49 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 50 H 0.08 0.63 8.04 -51.93 -0.42 0.22 16 LS Contribution 408.31 15.07 6.15 6.15 Total: -1.00 -38.18 408.31 -9.63 -47.81 By element: Atomic # 1 Polarization: 7.14 SS G_CDS: -8.52 Total: -1.38 kcal Atomic # 6 Polarization: 14.00 SS G_CDS: -0.72 Total: 13.28 kcal Atomic # 7 Polarization: -59.14 SS G_CDS: -0.82 Total: -59.97 kcal Atomic # 8 Polarization: -22.73 SS G_CDS: -0.70 Total: -23.43 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -5.02 Total: 17.52 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -38.18 -9.63 -47.81 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108526087.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.825 kcal (2) G-P(sol) polarization free energy of solvation -38.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds