Wall clock time and date at job start Tue Mar 31 2020 22:44:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47274 * 2 1 4 4 C 1.52998 * 109.46904 * 179.97438 * 3 2 1 5 5 O 1.42908 * 109.46958 * 179.97438 * 4 3 2 6 6 C 1.42897 * 113.99818 * 179.97438 * 5 4 3 7 7 C 1.50700 * 109.46660 * 180.02562 * 6 5 4 8 8 O 1.21282 * 120.00661 * 359.97438 * 7 6 5 9 9 N 1.34790 * 120.00010 * 180.02562 * 7 6 5 10 10 C 1.46499 * 120.00103 * 179.97438 * 9 7 6 11 11 H 1.08999 * 110.85757 * 322.66538 * 10 9 7 12 12 C 1.54628 * 110.96819 * 86.45167 * 10 9 7 13 13 C 1.51275 * 104.19635 * 93.35780 * 12 10 9 14 14 O 1.21281 * 124.94615 * 196.23224 * 13 12 10 15 15 N 1.34424 * 110.11780 * 16.25019 * 13 12 10 16 16 C 1.46500 * 124.35300 * 180.14254 * 15 13 12 17 17 C 1.53945 * 113.73764 * 36.69965 * 16 15 13 18 18 N 1.47585 * 86.11424 * 222.04756 * 17 16 15 19 19 C 1.36932 * 134.49117 * 204.64124 * 18 17 16 20 20 H 1.08007 * 120.00152 * 179.97438 * 19 18 17 21 21 C 1.38813 * 120.00220 * 0.02562 * 19 18 17 22 22 N 1.31610 * 119.99981 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 119.99892 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.46807 * 90.00487 * 23 21 19 25 25 H 1.48499 * 109.46819 * 209.99978 * 23 21 19 26 26 H 1.48498 * 109.47305 * 330.00126 * 23 21 19 27 27 C 1.47578 * 91.01429 * 24.64307 * 18 17 16 28 28 C 1.46768 * 111.29731 * 0.40742 * 15 13 12 29 29 H 1.08995 * 109.46797 * 300.00040 * 1 2 3 30 30 H 1.09002 * 109.46839 * 60.00166 * 1 2 3 31 31 H 1.09000 * 109.46959 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.46935 * 240.00113 * 2 1 3 33 33 H 1.09003 * 109.47058 * 120.00585 * 2 1 3 34 34 H 1.09004 * 109.47047 * 60.00182 * 3 2 1 35 35 H 1.08998 * 109.47104 * 300.00209 * 3 2 1 36 36 H 1.09000 * 109.47229 * 60.00747 * 4 3 2 37 37 H 1.08998 * 109.47440 * 300.00040 * 4 3 2 38 38 H 1.08996 * 109.47436 * 60.00610 * 6 5 4 39 39 H 1.08996 * 109.47171 * 299.99976 * 6 5 4 40 40 H 0.96997 * 119.99339 * 0.02562 * 9 7 6 41 41 H 1.09002 * 110.48704 * 334.68086 * 12 10 9 42 42 H 1.08996 * 110.59997 * 212.09269 * 12 10 9 43 43 H 1.09001 * 112.94181 * 168.43123 * 16 15 13 44 44 H 1.08997 * 113.77439 * 336.34790 * 17 16 15 45 45 H 1.08998 * 113.76804 * 107.75285 * 17 16 15 46 46 H 0.97002 * 120.00274 * 180.02562 * 22 21 19 47 47 H 1.09003 * 113.76849 * 221.06015 * 27 18 17 48 48 H 1.09004 * 113.77238 * 89.66051 * 27 18 17 49 49 H 1.09003 * 110.24577 * 101.98147 * 28 15 13 50 50 H 1.08999 * 110.24371 * 223.98527 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 8 4.0464 2.7897 0.0000 6 6 5.4709 2.9025 0.0012 7 6 5.8595 4.3585 0.0010 8 8 5.0011 5.2153 -0.0004 9 7 7.1611 4.7087 0.0015 10 6 7.5389 6.1241 0.0008 11 1 6.8567 6.7075 -0.6176 12 6 7.5945 6.6827 1.4416 13 6 9.0421 6.5170 1.8481 14 8 9.4542 6.5701 2.9875 15 7 9.8055 6.3026 0.7626 16 6 11.2556 6.0973 0.7992 17 6 11.7367 5.2907 2.0190 18 7 12.8430 6.2642 2.1002 19 6 14.1108 6.2353 2.6169 20 1 14.7431 7.1080 2.5457 21 6 14.5838 5.0839 3.2314 22 7 13.8139 4.0199 3.3169 23 14 16.3135 5.0443 3.9356 24 1 16.2814 5.4887 5.3523 25 1 16.8458 3.6599 3.8631 26 1 17.1882 5.9527 3.1515 27 6 12.0342 7.2813 1.4008 28 6 9.0005 6.3068 -0.4646 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6767 1.9563 -0.8899 36 1 3.9337 0.9285 -0.8892 37 1 3.9330 0.9287 0.8908 38 1 5.8744 2.4184 -0.8881 39 1 5.8729 2.4196 0.8918 40 1 7.8476 4.0234 0.0015 41 1 6.9450 6.1056 2.0998 42 1 7.3123 7.7354 1.4559 43 1 11.6588 5.7436 -0.1497 44 1 11.0545 5.3293 2.8682 45 1 12.0595 4.2782 1.7767 46 1 14.1442 3.2154 3.7466 47 1 12.5943 7.8581 0.6647 48 1 11.4392 7.9047 2.0683 49 1 9.1141 7.2567 -0.9869 50 1 9.2960 5.4815 -1.1123 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108526087.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:44:24 Heat of formation + Delta-G solvation = -84.338079 kcal Electronic energy + Delta-G solvation = -29255.324933 eV Core-core repulsion = 25090.591069 eV Total energy + Delta-G solvation = -4164.733865 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.94235 -40.65450 -39.08219 -38.67698 -37.56058 -35.78907 -35.12854 -34.13684 -31.97121 -30.54738 -29.23110 -28.82624 -27.71431 -26.59813 -25.23073 -24.18659 -22.92586 -22.11397 -22.03504 -21.56379 -19.73952 -18.79010 -18.34023 -18.10365 -17.72754 -17.50663 -17.17556 -16.97571 -16.33145 -16.13872 -16.00855 -15.68654 -15.35008 -15.22138 -15.04104 -14.63821 -14.43793 -14.18428 -14.13975 -13.88874 -13.66115 -13.44057 -13.36196 -13.20208 -12.86995 -12.83155 -12.76705 -12.64861 -12.41374 -12.39633 -12.01944 -11.96044 -11.88419 -11.86058 -11.52006 -11.51827 -11.05346 -10.88553 -10.67171 -10.62094 -10.14166 -9.56009 -8.93163 -7.92756 -5.26865 1.43142 1.46574 1.53723 1.54983 1.61331 1.77755 2.00284 2.48520 2.95296 3.25758 3.34811 3.46064 3.49162 3.74859 3.80333 3.86638 4.00329 4.09944 4.22207 4.24458 4.26660 4.27721 4.30931 4.44036 4.49705 4.54575 4.62928 4.69574 4.70423 4.77240 4.82074 4.88338 4.92719 4.93594 4.95673 5.04187 5.22319 5.24463 5.25308 5.36000 5.40903 5.45536 5.48879 5.87246 5.90898 6.09353 6.27342 6.49354 6.89155 7.18424 7.25828 7.57654 8.53343 9.24399 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.016981 B = 0.001910 C = 0.001774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1648.457917 B =14653.787177 C =15778.558738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.118 4.118 3 C -0.119 4.119 4 C 0.056 3.944 5 O -0.398 6.398 6 C 0.042 3.958 7 C 0.517 3.483 8 O -0.563 6.563 9 N -0.711 5.711 10 C 0.147 3.853 11 H 0.133 0.867 12 C -0.156 4.156 13 C 0.502 3.498 14 O -0.576 6.576 15 N -0.606 5.606 16 C 0.139 3.861 17 C 0.147 3.853 18 N -0.635 5.635 19 C -0.238 4.238 20 H 0.085 0.915 21 C -0.067 4.067 22 N -0.953 5.953 23 Si 0.983 3.017 24 H -0.292 1.292 25 H -0.289 1.289 26 H -0.263 1.263 27 C 0.110 3.890 28 C 0.098 3.902 29 H 0.051 0.949 30 H 0.054 0.946 31 H 0.063 0.937 32 H 0.072 0.928 33 H 0.068 0.932 34 H 0.058 0.942 35 H 0.064 0.936 36 H 0.068 0.932 37 H 0.060 0.940 38 H 0.113 0.887 39 H 0.098 0.902 40 H 0.416 0.584 41 H 0.089 0.911 42 H 0.129 0.871 43 H 0.140 0.860 44 H 0.023 0.977 45 H 0.043 0.957 46 H 0.249 0.751 47 H 0.069 0.931 48 H 0.020 0.980 49 H 0.118 0.882 50 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.373 -5.963 -15.901 28.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.155 4.155 3 C -0.157 4.157 4 C -0.020 4.020 5 O -0.317 6.317 6 C -0.038 4.038 7 C 0.304 3.696 8 O -0.441 6.441 9 N -0.365 5.365 10 C 0.041 3.959 11 H 0.151 0.849 12 C -0.198 4.198 13 C 0.291 3.709 14 O -0.456 6.456 15 N -0.339 5.339 16 C 0.035 3.965 17 C 0.021 3.979 18 N -0.361 5.361 19 C -0.366 4.366 20 H 0.102 0.898 21 C -0.260 4.260 22 N -0.601 5.601 23 Si 0.810 3.190 24 H -0.220 1.220 25 H -0.216 1.216 26 H -0.187 1.187 27 C -0.016 4.016 28 C -0.023 4.023 29 H 0.070 0.930 30 H 0.073 0.927 31 H 0.082 0.918 32 H 0.091 0.909 33 H 0.087 0.913 34 H 0.077 0.923 35 H 0.083 0.917 36 H 0.087 0.913 37 H 0.078 0.922 38 H 0.131 0.869 39 H 0.116 0.884 40 H 0.253 0.747 41 H 0.107 0.893 42 H 0.147 0.853 43 H 0.158 0.842 44 H 0.040 0.960 45 H 0.062 0.938 46 H 0.058 0.942 47 H 0.087 0.913 48 H 0.038 0.962 49 H 0.136 0.864 50 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -22.552 -5.315 -15.204 27.713 hybrid contribution 1.427 -0.518 1.343 2.027 sum -21.125 -5.833 -13.861 25.931 Atomic orbital electron populations 1.21773 0.95268 1.02208 1.01889 1.21426 0.96406 0.94816 1.02896 1.21551 0.93271 0.98187 1.02657 1.22779 0.95459 0.82138 1.01622 1.87952 1.19705 1.28303 1.95780 1.22345 0.83399 0.92876 1.05154 1.20722 0.82353 0.91447 0.75087 1.90721 1.50537 1.53079 1.49762 1.45885 1.07117 1.08410 1.75117 1.21847 0.96626 0.82594 0.94803 0.84949 1.22785 0.92294 1.05571 0.99123 1.21506 0.90056 0.75013 0.84299 1.90755 1.79414 1.52344 1.23052 1.48480 1.06873 1.70164 1.08371 1.23370 0.77086 0.96179 0.99864 1.22578 0.86994 0.94179 0.94136 1.46098 1.09846 1.12245 1.67957 1.19436 0.88236 0.98365 1.30575 0.89760 1.25694 1.02650 0.95870 1.01825 1.70026 1.37477 1.03262 1.49384 0.85021 0.79088 0.76919 0.77937 1.21950 1.21567 1.18709 1.23034 0.91657 0.93129 0.93825 1.22703 0.87198 1.06256 0.86193 0.92980 0.92661 0.91764 0.90883 0.91345 0.92301 0.91741 0.91337 0.92156 0.86890 0.88434 0.74695 0.89261 0.85289 0.84230 0.95971 0.93831 0.94243 0.91302 0.96183 0.86436 0.86767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 9.91 71.98 0.71 -0.69 16 2 C -0.12 -1.10 5.93 30.59 0.18 -0.91 16 3 C -0.12 -1.57 5.58 30.59 0.17 -1.40 16 4 C 0.06 0.74 5.94 71.98 0.43 1.16 16 5 O -0.40 -7.97 9.88 -129.94 -1.28 -9.26 16 6 C 0.04 0.59 6.42 71.24 0.46 1.05 16 7 C 0.52 10.06 7.91 87.65 0.69 10.75 16 8 O -0.56 -16.10 16.24 16.00 0.26 -15.84 16 9 N -0.71 -10.53 5.16 -437.52 -2.26 -12.78 16 10 C 0.15 2.25 3.43 46.05 0.16 2.41 16 11 H 0.13 1.76 7.72 -2.39 -0.02 1.74 16 12 C -0.16 -3.53 6.58 30.59 0.20 -3.33 16 13 C 0.50 16.52 7.44 87.89 0.65 17.17 16 14 O -0.58 -26.76 14.63 -3.03 -0.04 -26.81 16 15 N -0.61 -16.33 3.15 -799.72 -2.52 -18.85 16 16 C 0.14 4.87 4.82 46.75 0.23 5.09 16 17 C 0.15 7.39 6.88 86.48 0.60 7.98 16 18 N -0.63 -34.31 3.70 -717.38 -2.65 -36.97 16 19 C -0.24 -13.92 10.70 84.03 0.90 -13.02 16 20 H 0.08 4.69 7.83 -2.91 -0.02 4.67 16 21 C -0.07 -3.98 5.50 84.86 0.47 -3.51 16 22 N -0.95 -59.43 11.38 21.65 0.25 -59.18 16 23 Si 0.98 46.89 29.55 68.60 2.03 48.92 16 24 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 25 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 26 H -0.26 -11.64 7.11 99.48 0.71 -10.94 16 27 C 0.11 4.63 8.45 86.48 0.73 5.36 16 28 C 0.10 1.37 6.96 86.83 0.60 1.97 16 29 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.05 0.50 8.14 -2.39 -0.02 0.49 16 31 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 32 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 33 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 34 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 37 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 38 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 40 H 0.42 4.59 8.57 -92.71 -0.79 3.79 16 41 H 0.09 2.28 8.09 -2.39 -0.02 2.26 16 42 H 0.13 2.47 8.14 -2.39 -0.02 2.45 16 43 H 0.14 4.03 8.14 -2.39 -0.02 4.01 16 44 H 0.02 1.29 5.60 -2.39 -0.01 1.28 16 45 H 0.04 2.37 7.15 -2.39 -0.02 2.35 16 46 H 0.25 14.97 8.31 -92.71 -0.77 14.20 16 47 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 48 H 0.02 0.94 7.39 -2.39 -0.02 0.92 16 49 H 0.12 1.09 8.14 -2.39 -0.02 1.07 16 50 H 0.11 1.04 8.04 -2.39 -0.02 1.03 16 Total: -1.00 -89.12 408.31 1.09 -88.03 By element: Atomic # 1 Polarization: 12.51 SS G_CDS: 0.14 Total: 12.65 kcal Atomic # 6 Polarization: 22.91 SS G_CDS: 7.18 Total: 30.09 kcal Atomic # 7 Polarization: -120.60 SS G_CDS: -7.19 Total: -127.78 kcal Atomic # 8 Polarization: -50.83 SS G_CDS: -1.07 Total: -51.90 kcal Atomic # 14 Polarization: 46.89 SS G_CDS: 2.03 Total: 48.92 kcal Total: -89.12 1.09 -88.03 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108526087.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.690 kcal (2) G-P(sol) polarization free energy of solvation -89.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds