Wall clock time and date at job start Tue Mar 31 2020 23:58:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47178 * 2 1 4 4 H 1.09001 * 109.47328 * 54.99699 * 3 2 1 5 5 C 1.52994 * 109.47241 * 174.99683 * 3 2 1 6 6 O 1.42904 * 109.46910 * 294.99680 * 3 2 1 7 7 C 1.42901 * 113.99806 * 149.99872 * 6 3 2 8 8 C 1.50700 * 109.47144 * 179.97438 * 7 6 3 9 9 O 1.21278 * 119.99539 * 359.97438 * 8 7 6 10 10 N 1.34771 * 120.00228 * 180.02562 * 8 7 6 11 11 C 1.46501 * 119.99928 * 180.02562 * 10 8 7 12 12 H 1.09000 * 110.88295 * 328.79777 * 11 10 8 13 13 C 1.54624 * 110.97338 * 92.61930 * 11 10 8 14 14 C 1.51281 * 104.20087 * 142.91481 * 13 11 10 15 15 O 1.21279 * 124.94630 * 164.01180 * 14 13 11 16 16 N 1.34424 * 110.11017 * 343.74403 * 14 13 11 17 17 C 1.46503 * 124.34411 * 179.61223 * 16 14 13 18 18 C 1.53947 * 113.74242 * 36.65194 * 17 16 14 19 19 N 1.47577 * 86.11492 * 222.04514 * 18 17 16 20 20 C 1.36936 * 134.48867 * 204.64493 * 19 18 17 21 21 H 1.08005 * 120.00081 * 180.02562 * 20 19 18 22 22 C 1.38808 * 120.00207 * 359.97438 * 20 19 18 23 23 N 1.31614 * 120.00015 * 0.02562 * 22 20 19 24 24 Si 1.86806 * 120.00090 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.46736 * 90.00526 * 24 22 20 26 26 H 1.48496 * 109.47126 * 210.00445 * 24 22 20 27 27 H 1.48505 * 109.46859 * 330.00695 * 24 22 20 28 28 C 1.47578 * 91.01708 * 24.64094 * 19 18 17 29 29 C 1.46764 * 111.30306 * 359.59326 * 16 14 13 30 30 H 1.08998 * 109.47133 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47024 * 300.00641 * 1 2 3 32 32 H 1.08996 * 109.46679 * 59.99977 * 1 2 3 33 33 H 1.08990 * 109.47474 * 239.99610 * 2 1 3 34 34 H 1.09000 * 109.46867 * 119.99290 * 2 1 3 35 35 H 1.09006 * 109.47483 * 179.97438 * 5 3 2 36 36 H 1.09004 * 109.47636 * 300.00128 * 5 3 2 37 37 H 1.09002 * 109.47391 * 60.00079 * 5 3 2 38 38 H 1.09007 * 109.47085 * 60.00477 * 7 6 3 39 39 H 1.08998 * 109.47564 * 300.00523 * 7 6 3 40 40 H 0.97001 * 120.00169 * 359.97438 * 10 8 7 41 41 H 1.09000 * 110.48926 * 24.23295 * 13 11 10 42 42 H 1.09001 * 110.48194 * 261.59651 * 13 11 10 43 43 H 1.08997 * 112.93934 * 168.38303 * 17 16 14 44 44 H 1.09003 * 113.76651 * 336.34655 * 18 17 16 45 45 H 1.09000 * 113.76774 * 107.74249 * 18 17 16 46 46 H 0.97009 * 119.99925 * 179.97438 * 23 22 20 47 47 H 1.08999 * 113.76902 * 221.05922 * 28 19 18 48 48 H 1.09001 * 113.77115 * 89.66168 * 28 19 18 49 49 H 1.09002 * 110.24057 * 136.01578 * 29 16 14 50 50 H 1.08999 * 110.24524 * 258.01533 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5648 1.4444 0.1258 6 8 1.6620 2.0814 -1.2211 7 6 1.4559 3.4903 -1.1004 8 6 1.0639 4.0573 -2.4405 9 8 0.9707 3.3268 -3.4041 10 7 0.8180 5.3762 -2.5684 11 6 0.4363 5.9272 -3.8710 12 1 0.8961 5.3620 -4.6818 13 6 -1.1016 5.9665 -4.0263 14 6 -1.3654 7.2487 -4.7846 15 8 -2.4044 7.5216 -5.3474 16 7 -0.2826 8.0439 -4.7388 17 6 -0.1954 9.3591 -5.3783 18 6 -1.5097 10.1593 -5.3318 19 7 -1.2163 10.5302 -6.7297 20 6 -1.5691 11.5768 -7.5391 21 1 -1.2112 11.6166 -8.5573 22 6 -2.3877 12.5862 -7.0513 23 7 -2.8244 12.5375 -5.8107 24 14 -2.8697 14.0136 -8.1557 25 1 -4.1266 13.6816 -8.8735 26 1 -3.0778 15.2301 -7.3299 27 1 -1.7877 14.2637 -9.1418 28 6 -0.3898 9.3202 -6.9049 29 6 0.8008 7.4255 -3.9656 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3632 0.5138 -0.8900 33 1 1.8934 -0.5138 -0.8898 34 1 1.8933 -0.5137 0.8901 35 1 3.9282 2.4721 0.1253 36 1 3.8532 0.9570 1.0572 37 1 3.9995 0.9053 -0.7160 38 1 2.3770 3.9644 -0.7611 39 1 0.6619 3.6808 -0.3785 40 1 0.8929 5.9605 -1.7977 41 1 -1.5831 5.9954 -3.0489 42 1 -1.4492 5.1064 -4.5985 43 1 0.6785 9.9284 -5.0615 44 1 -2.3984 9.5382 -5.2192 45 1 -1.4872 11.0012 -4.6398 46 1 -3.3962 13.2430 -5.4697 47 1 0.5269 9.4921 -7.4690 48 1 -0.9495 8.4526 -7.2546 49 1 1.7521 7.5504 -4.4829 50 1 0.8517 7.8649 -2.9694 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108533231.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:58:44 Heat of formation + Delta-G solvation = -51.770385 kcal Electronic energy + Delta-G solvation = -29425.293379 eV Core-core repulsion = 25261.971756 eV Total energy + Delta-G solvation = -4163.321623 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -40.77880 -39.83675 -38.58525 -37.24176 -36.38314 -34.20958 -34.17161 -32.20606 -30.68254 -30.28394 -28.39800 -27.51467 -26.72400 -24.71849 -24.09690 -23.41217 -22.03878 -21.50031 -21.01434 -20.38058 -18.34389 -17.67181 -17.57659 -16.84803 -16.58036 -16.40832 -16.24696 -15.38436 -15.12454 -14.80246 -14.65552 -14.39596 -14.18858 -13.95223 -13.78963 -13.67935 -13.51355 -13.48317 -13.24853 -13.11589 -12.53179 -12.41049 -12.07913 -12.07082 -11.86935 -11.77397 -11.59257 -11.43044 -11.40205 -11.16137 -11.01620 -10.84718 -10.69554 -10.23074 -10.10607 -10.07640 -9.97986 -9.69319 -9.48589 -9.15759 -8.64621 -8.18857 -6.80402 -5.71522 -3.03385 2.25626 2.32333 2.92296 3.24261 3.43210 3.47844 3.49326 3.52416 4.15802 4.27656 4.41242 4.46643 4.51619 4.52234 4.61901 4.65537 4.75333 4.81103 4.87141 4.89947 5.09907 5.17868 5.21511 5.24423 5.34164 5.37403 5.49744 5.54620 5.57985 5.64069 5.65793 5.68734 5.69913 5.72620 5.85405 5.94790 6.08639 6.30204 6.52625 6.58597 6.65334 6.87730 7.09611 7.30029 7.48914 7.59690 7.65394 7.86528 8.02388 8.55152 9.09563 9.75517 10.64725 11.45726 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.038214 B = 0.001749 C = 0.001728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.546885 B =16002.991089 C =16204.061426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.120 4.120 3 C 0.083 3.917 4 H 0.062 0.938 5 C -0.177 4.177 6 O -0.354 6.354 7 C 0.044 3.956 8 C 0.516 3.484 9 O -0.512 6.512 10 N -0.720 5.720 11 C 0.136 3.864 12 H 0.114 0.886 13 C -0.168 4.168 14 C 0.515 3.485 15 O -0.506 6.506 16 N -0.606 5.606 17 C 0.098 3.902 18 C 0.151 3.849 19 N -0.605 5.605 20 C -0.220 4.220 21 H 0.080 0.920 22 C -0.008 4.008 23 N -0.920 5.920 24 Si 0.913 3.087 25 H -0.289 1.289 26 H -0.290 1.290 27 H -0.281 1.281 28 C 0.111 3.889 29 C 0.099 3.901 30 H 0.055 0.945 31 H 0.050 0.950 32 H 0.064 0.936 33 H 0.073 0.927 34 H 0.075 0.925 35 H 0.057 0.943 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.080 0.920 39 H 0.081 0.919 40 H 0.403 0.597 41 H 0.104 0.896 42 H 0.103 0.897 43 H 0.106 0.894 44 H 0.059 0.941 45 H 0.070 0.930 46 H 0.253 0.747 47 H 0.043 0.957 48 H 0.039 0.961 49 H 0.085 0.915 50 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.988 -21.902 18.252 31.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.158 4.158 3 C 0.025 3.975 4 H 0.080 0.920 5 C -0.235 4.235 6 O -0.272 6.272 7 C -0.036 4.036 8 C 0.301 3.699 9 O -0.385 6.385 10 N -0.375 5.375 11 C 0.031 3.969 12 H 0.132 0.868 13 C -0.209 4.209 14 C 0.301 3.699 15 O -0.381 6.381 16 N -0.341 5.341 17 C -0.005 4.005 18 C 0.026 3.974 19 N -0.331 5.331 20 C -0.348 4.348 21 H 0.098 0.902 22 C -0.205 4.205 23 N -0.567 5.567 24 Si 0.744 3.256 25 H -0.216 1.216 26 H -0.217 1.217 27 H -0.206 1.206 28 C -0.016 4.016 29 C -0.026 4.026 30 H 0.074 0.926 31 H 0.069 0.931 32 H 0.083 0.917 33 H 0.092 0.908 34 H 0.093 0.907 35 H 0.076 0.924 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.098 0.902 39 H 0.099 0.901 40 H 0.239 0.761 41 H 0.122 0.878 42 H 0.122 0.878 43 H 0.124 0.876 44 H 0.077 0.923 45 H 0.088 0.912 46 H 0.063 0.937 47 H 0.061 0.939 48 H 0.057 0.943 49 H 0.104 0.896 50 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 13.193 -22.012 16.941 30.750 hybrid contribution -0.202 1.232 0.151 1.258 sum 12.991 -20.780 17.092 29.878 Atomic orbital electron populations 1.21749 0.95199 1.01841 1.02292 1.21628 0.96806 0.94528 1.02832 1.22252 0.94364 0.94284 0.86563 0.91967 1.22316 0.95964 1.02495 1.02685 1.88069 1.89409 1.17656 1.32105 1.22216 1.01626 0.84511 0.95250 1.20269 0.77135 0.82039 0.90429 1.90767 1.49502 1.58309 1.39951 1.45802 1.71406 1.08376 1.11872 1.21808 0.94522 0.94078 0.86525 0.86799 1.22839 0.96627 0.98497 1.02973 1.20593 0.83506 0.85330 0.80456 1.90788 1.26942 1.76064 1.44262 1.48503 1.14070 1.19006 1.52557 1.24095 1.02449 0.80472 0.93435 1.22791 0.92272 0.94609 0.87766 1.45661 1.57086 1.19614 1.10731 1.18994 1.25338 0.96543 0.93903 0.90181 1.24798 0.99840 0.99057 0.96777 1.69831 1.38323 1.34229 1.14274 0.86098 0.78468 0.81715 0.79348 1.21600 1.21651 1.20609 1.22934 0.94502 0.91036 0.93159 1.22206 0.92214 0.90942 0.97225 0.92633 0.93075 0.91696 0.90849 0.90663 0.92419 0.91478 0.91511 0.90232 0.90134 0.76143 0.87785 0.87824 0.87646 0.92307 0.91200 0.93678 0.93900 0.94312 0.89640 0.90884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 9.81 37.16 0.36 -0.59 16 2 C -0.12 -0.69 5.64 -26.73 -0.15 -0.85 16 3 C 0.08 0.49 2.72 -26.73 -0.07 0.42 16 4 H 0.06 0.27 7.79 -51.93 -0.40 -0.13 16 5 C -0.18 -0.87 9.53 37.15 0.35 -0.52 16 6 O -0.35 -3.14 9.06 -55.14 -0.50 -3.64 16 7 C 0.04 0.27 6.23 36.01 0.22 0.50 16 8 C 0.52 4.74 7.91 -10.99 -0.09 4.66 16 9 O -0.51 -7.25 16.14 -14.35 -0.23 -7.49 16 10 N -0.72 -4.95 5.15 -52.23 -0.27 -5.21 16 11 C 0.14 1.28 3.53 -66.30 -0.23 1.05 16 12 H 0.11 1.22 7.54 -51.93 -0.39 0.82 16 13 C -0.17 -1.99 6.59 -26.74 -0.18 -2.17 16 14 C 0.52 8.72 7.44 -10.86 -0.08 8.64 16 15 O -0.51 -11.35 14.64 5.56 0.08 -11.27 16 16 N -0.61 -9.21 3.15 -166.64 -0.53 -9.74 16 17 C 0.10 1.86 4.82 -70.15 -0.34 1.52 16 18 C 0.15 3.79 6.88 -2.98 -0.02 3.76 16 19 N -0.60 -16.39 3.70 -178.11 -0.66 -17.04 16 20 C -0.22 -6.44 10.70 -15.06 -0.16 -6.60 16 21 H 0.08 2.25 7.83 -52.48 -0.41 1.84 16 22 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 23 N -0.92 -28.21 11.38 55.49 0.63 -27.58 16 24 Si 0.91 22.77 29.55 -169.99 -5.02 17.75 16 25 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 26 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 27 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 28 C 0.11 2.43 8.46 -2.98 -0.03 2.41 16 29 C 0.10 0.95 7.08 -3.12 -0.02 0.93 16 30 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.06 0.53 7.82 -51.93 -0.41 0.12 16 33 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 35 H 0.06 0.26 7.87 -51.93 -0.41 -0.15 16 36 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 37 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 38 H 0.08 0.30 7.87 -51.93 -0.41 -0.11 16 39 H 0.08 0.32 8.08 -51.93 -0.42 -0.10 16 40 H 0.40 1.45 8.43 -40.82 -0.34 1.11 16 41 H 0.10 1.09 8.08 -51.93 -0.42 0.67 16 42 H 0.10 1.28 8.14 -51.93 -0.42 0.86 16 43 H 0.11 1.79 8.14 -51.93 -0.42 1.37 16 44 H 0.06 1.62 5.57 -51.93 -0.29 1.34 16 45 H 0.07 1.88 7.15 -51.93 -0.37 1.51 16 46 H 0.25 7.49 8.31 -40.82 -0.34 7.15 16 47 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 48 H 0.04 0.91 7.42 -51.93 -0.39 0.52 16 49 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 50 H 0.07 0.54 7.80 -51.93 -0.40 0.14 16 LS Contribution 405.91 15.07 6.12 6.12 Total: -1.00 -38.79 405.91 -9.33 -48.12 By element: Atomic # 1 Polarization: 5.60 SS G_CDS: -8.43 Total: -2.83 kcal Atomic # 6 Polarization: 13.34 SS G_CDS: -0.52 Total: 12.81 kcal Atomic # 7 Polarization: -58.76 SS G_CDS: -0.82 Total: -59.58 kcal Atomic # 8 Polarization: -21.74 SS G_CDS: -0.65 Total: -22.39 kcal Atomic # 14 Polarization: 22.77 SS G_CDS: -5.02 Total: 17.75 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -38.79 -9.33 -48.12 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108533231.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.653 kcal (2) G-P(sol) polarization free energy of solvation -38.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds