Wall clock time and date at job start Tue Mar 31 2020 23:58:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47178 * 2 1 4 4 H 1.09001 * 109.47328 * 54.99699 * 3 2 1 5 5 C 1.52994 * 109.47241 * 174.99683 * 3 2 1 6 6 O 1.42904 * 109.46910 * 294.99680 * 3 2 1 7 7 C 1.42901 * 113.99806 * 149.99872 * 6 3 2 8 8 C 1.50700 * 109.47144 * 179.97438 * 7 6 3 9 9 O 1.21278 * 119.99539 * 359.97438 * 8 7 6 10 10 N 1.34771 * 120.00228 * 180.02562 * 8 7 6 11 11 C 1.46501 * 119.99928 * 180.02562 * 10 8 7 12 12 H 1.09000 * 110.88295 * 328.79777 * 11 10 8 13 13 C 1.54624 * 110.97338 * 92.61930 * 11 10 8 14 14 C 1.51281 * 104.20087 * 142.91481 * 13 11 10 15 15 O 1.21279 * 124.94630 * 164.01180 * 14 13 11 16 16 N 1.34424 * 110.11017 * 343.74403 * 14 13 11 17 17 C 1.46503 * 124.34411 * 179.61223 * 16 14 13 18 18 C 1.53947 * 113.74242 * 36.65194 * 17 16 14 19 19 N 1.47577 * 86.11492 * 222.04514 * 18 17 16 20 20 C 1.36936 * 134.48867 * 204.64493 * 19 18 17 21 21 H 1.08005 * 120.00081 * 180.02562 * 20 19 18 22 22 C 1.38808 * 120.00207 * 359.97438 * 20 19 18 23 23 N 1.31614 * 120.00015 * 0.02562 * 22 20 19 24 24 Si 1.86806 * 120.00090 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.46736 * 90.00526 * 24 22 20 26 26 H 1.48496 * 109.47126 * 210.00445 * 24 22 20 27 27 H 1.48505 * 109.46859 * 330.00695 * 24 22 20 28 28 C 1.47578 * 91.01708 * 24.64094 * 19 18 17 29 29 C 1.46764 * 111.30306 * 359.59326 * 16 14 13 30 30 H 1.08998 * 109.47133 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47024 * 300.00641 * 1 2 3 32 32 H 1.08996 * 109.46679 * 59.99977 * 1 2 3 33 33 H 1.08990 * 109.47474 * 239.99610 * 2 1 3 34 34 H 1.09000 * 109.46867 * 119.99290 * 2 1 3 35 35 H 1.09006 * 109.47483 * 179.97438 * 5 3 2 36 36 H 1.09004 * 109.47636 * 300.00128 * 5 3 2 37 37 H 1.09002 * 109.47391 * 60.00079 * 5 3 2 38 38 H 1.09007 * 109.47085 * 60.00477 * 7 6 3 39 39 H 1.08998 * 109.47564 * 300.00523 * 7 6 3 40 40 H 0.97001 * 120.00169 * 359.97438 * 10 8 7 41 41 H 1.09000 * 110.48926 * 24.23295 * 13 11 10 42 42 H 1.09001 * 110.48194 * 261.59651 * 13 11 10 43 43 H 1.08997 * 112.93934 * 168.38303 * 17 16 14 44 44 H 1.09003 * 113.76651 * 336.34655 * 18 17 16 45 45 H 1.09000 * 113.76774 * 107.74249 * 18 17 16 46 46 H 0.97009 * 119.99925 * 179.97438 * 23 22 20 47 47 H 1.08999 * 113.76902 * 221.05922 * 28 19 18 48 48 H 1.09001 * 113.77115 * 89.66168 * 28 19 18 49 49 H 1.09002 * 110.24057 * 136.01578 * 29 16 14 50 50 H 1.08999 * 110.24524 * 258.01533 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5648 1.4444 0.1258 6 8 1.6620 2.0814 -1.2211 7 6 1.4559 3.4903 -1.1004 8 6 1.0639 4.0573 -2.4405 9 8 0.9707 3.3268 -3.4041 10 7 0.8180 5.3762 -2.5684 11 6 0.4363 5.9272 -3.8710 12 1 0.8961 5.3620 -4.6818 13 6 -1.1016 5.9665 -4.0263 14 6 -1.3654 7.2487 -4.7846 15 8 -2.4044 7.5216 -5.3474 16 7 -0.2826 8.0439 -4.7388 17 6 -0.1954 9.3591 -5.3783 18 6 -1.5097 10.1593 -5.3318 19 7 -1.2163 10.5302 -6.7297 20 6 -1.5691 11.5768 -7.5391 21 1 -1.2112 11.6166 -8.5573 22 6 -2.3877 12.5862 -7.0513 23 7 -2.8244 12.5375 -5.8107 24 14 -2.8697 14.0136 -8.1557 25 1 -4.1266 13.6816 -8.8735 26 1 -3.0778 15.2301 -7.3299 27 1 -1.7877 14.2637 -9.1418 28 6 -0.3898 9.3202 -6.9049 29 6 0.8008 7.4255 -3.9656 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3632 0.5138 -0.8900 33 1 1.8934 -0.5138 -0.8898 34 1 1.8933 -0.5137 0.8901 35 1 3.9282 2.4721 0.1253 36 1 3.8532 0.9570 1.0572 37 1 3.9995 0.9053 -0.7160 38 1 2.3770 3.9644 -0.7611 39 1 0.6619 3.6808 -0.3785 40 1 0.8929 5.9605 -1.7977 41 1 -1.5831 5.9954 -3.0489 42 1 -1.4492 5.1064 -4.5985 43 1 0.6785 9.9284 -5.0615 44 1 -2.3984 9.5382 -5.2192 45 1 -1.4872 11.0012 -4.6398 46 1 -3.3962 13.2430 -5.4697 47 1 0.5269 9.4921 -7.4690 48 1 -0.9495 8.4526 -7.2546 49 1 1.7521 7.5504 -4.4829 50 1 0.8517 7.8649 -2.9694 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108533231.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:58:43 Heat of formation + Delta-G solvation = -80.452202 kcal Electronic energy + Delta-G solvation = -29426.537116 eV Core-core repulsion = 25261.971756 eV Total energy + Delta-G solvation = -4164.565360 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.91312 -40.72087 -39.25818 -38.85057 -37.60123 -35.26699 -34.68170 -34.16765 -31.88038 -30.74744 -29.38157 -29.02268 -27.74961 -26.61402 -25.23680 -24.51054 -22.91487 -22.12941 -21.93316 -21.68168 -19.80038 -18.80957 -18.33025 -18.16636 -17.72395 -17.44653 -16.97854 -16.91119 -16.32821 -16.03836 -15.67331 -15.43321 -15.34056 -15.04107 -14.80796 -14.63068 -14.52981 -14.32582 -14.10246 -13.96819 -13.63560 -13.59060 -13.42508 -13.26876 -12.94295 -12.84418 -12.76602 -12.57920 -12.52893 -12.25955 -12.20261 -12.02522 -11.91531 -11.88352 -11.51956 -11.42264 -11.12899 -10.87857 -10.65512 -10.51601 -10.11596 -9.58121 -8.94604 -7.93210 -5.27893 1.42757 1.46471 1.54475 1.55188 1.60674 1.68042 2.05290 2.48137 3.00179 3.25268 3.34569 3.47057 3.49036 3.73442 3.78007 3.90930 3.98844 4.03408 4.11651 4.24531 4.24865 4.30749 4.40091 4.47798 4.52237 4.57544 4.65023 4.71758 4.75791 4.77001 4.82158 4.87207 4.88995 4.91365 5.10110 5.14389 5.20530 5.22503 5.25207 5.35171 5.38955 5.46953 5.47586 5.84521 5.89375 6.22841 6.24312 6.57755 6.88198 7.21254 7.25519 7.56665 8.52260 9.24003 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.038214 B = 0.001749 C = 0.001728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.546885 B =16002.991089 C =16204.061426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.122 4.122 3 C 0.079 3.921 4 H 0.084 0.916 5 C -0.175 4.175 6 O -0.390 6.390 7 C 0.044 3.956 8 C 0.515 3.485 9 O -0.569 6.569 10 N -0.699 5.699 11 C 0.151 3.849 12 H 0.104 0.896 13 C -0.155 4.155 14 C 0.503 3.497 15 O -0.573 6.573 16 N -0.605 5.605 17 C 0.137 3.863 18 C 0.147 3.853 19 N -0.635 5.635 20 C -0.239 4.239 21 H 0.085 0.915 22 C -0.068 4.068 23 N -0.954 5.954 24 Si 0.985 3.015 25 H -0.291 1.291 26 H -0.289 1.289 27 H -0.263 1.263 28 C 0.110 3.890 29 C 0.100 3.900 30 H 0.057 0.943 31 H 0.063 0.937 32 H 0.039 0.961 33 H 0.055 0.945 34 H 0.095 0.905 35 H 0.064 0.936 36 H 0.082 0.918 37 H 0.049 0.951 38 H 0.111 0.889 39 H 0.109 0.891 40 H 0.425 0.575 41 H 0.124 0.876 42 H 0.095 0.905 43 H 0.140 0.860 44 H 0.025 0.975 45 H 0.043 0.957 46 H 0.249 0.751 47 H 0.069 0.931 48 H 0.020 0.980 49 H 0.111 0.889 50 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.646 -21.999 20.362 34.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.160 4.160 3 C 0.022 3.978 4 H 0.102 0.898 5 C -0.232 4.232 6 O -0.309 6.309 7 C -0.035 4.035 8 C 0.302 3.698 9 O -0.447 6.447 10 N -0.355 5.355 11 C 0.044 3.956 12 H 0.122 0.878 13 C -0.196 4.196 14 C 0.292 3.708 15 O -0.452 6.452 16 N -0.338 5.338 17 C 0.033 3.967 18 C 0.021 3.979 19 N -0.361 5.361 20 C -0.367 4.367 21 H 0.103 0.897 22 C -0.261 4.261 23 N -0.602 5.602 24 Si 0.812 3.188 25 H -0.219 1.219 26 H -0.215 1.215 27 H -0.187 1.187 28 C -0.016 4.016 29 C -0.022 4.022 30 H 0.076 0.924 31 H 0.082 0.918 32 H 0.059 0.941 33 H 0.073 0.927 34 H 0.114 0.886 35 H 0.084 0.916 36 H 0.101 0.899 37 H 0.068 0.932 38 H 0.129 0.871 39 H 0.127 0.873 40 H 0.264 0.736 41 H 0.142 0.858 42 H 0.114 0.886 43 H 0.158 0.842 44 H 0.043 0.957 45 H 0.062 0.938 46 H 0.058 0.942 47 H 0.087 0.913 48 H 0.038 0.962 49 H 0.129 0.871 50 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 15.931 -22.128 19.111 33.297 hybrid contribution -1.040 1.162 -0.483 1.633 sum 14.891 -20.966 18.628 31.754 Atomic orbital electron populations 1.21724 0.95709 1.01829 1.01629 1.21675 0.96348 0.95029 1.02932 1.22409 0.95006 0.94073 0.86271 0.89840 1.22303 0.95221 1.02925 1.02766 1.88037 1.89818 1.19137 1.33943 1.22391 1.04005 0.83578 0.93557 1.20920 0.75859 0.82050 0.90984 1.90754 1.52133 1.59765 1.42038 1.45562 1.70171 1.08125 1.11593 1.21513 0.92237 0.94164 0.87685 0.87838 1.22761 0.98976 0.95054 1.02813 1.21472 0.82779 0.86823 0.79755 1.90755 1.29657 1.77682 1.47125 1.48455 1.15478 1.17583 1.52291 1.23401 0.99911 0.81746 0.91607 1.22594 0.94478 0.94164 0.86706 1.46100 1.57833 1.20636 1.11574 1.19446 1.25283 0.97392 0.94583 0.89704 1.25730 1.00125 1.01983 0.98298 1.70040 1.39072 1.35017 1.16075 0.84993 0.78121 0.78032 0.77636 1.21869 1.21500 1.18692 1.23027 0.94225 0.88458 0.95905 1.22551 0.90916 0.90245 0.98488 0.92411 0.91798 0.94147 0.92651 0.88635 0.91648 0.89889 0.93213 0.87107 0.87343 0.73630 0.85837 0.88636 0.84242 0.95733 0.93849 0.94200 0.91281 0.96237 0.87080 0.87272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 9.81 71.98 0.71 -1.05 16 2 C -0.12 -1.26 5.64 30.60 0.17 -1.09 16 3 C 0.08 0.76 2.72 30.59 0.08 0.84 16 4 H 0.08 0.43 7.79 -2.39 -0.02 0.41 16 5 C -0.17 -1.31 9.53 71.98 0.69 -0.63 16 6 O -0.39 -6.30 9.06 -129.94 -1.18 -7.47 16 7 C 0.04 0.40 6.23 71.24 0.44 0.85 16 8 C 0.51 8.24 7.91 87.66 0.69 8.94 16 9 O -0.57 -15.83 16.14 16.02 0.26 -15.57 16 10 N -0.70 -7.07 5.15 -437.54 -2.25 -9.33 16 11 C 0.15 2.42 3.53 46.05 0.16 2.59 16 12 H 0.10 2.01 7.54 -2.39 -0.02 2.00 16 13 C -0.15 -3.51 6.59 30.59 0.20 -3.31 16 14 C 0.50 17.15 7.44 87.90 0.65 17.80 16 15 O -0.57 -27.14 14.64 -3.02 -0.04 -27.19 16 16 N -0.60 -17.38 3.15 -799.72 -2.52 -19.91 16 17 C 0.14 5.05 4.82 46.75 0.23 5.27 16 18 C 0.15 7.58 6.88 86.48 0.60 8.17 16 19 N -0.63 -35.13 3.70 -717.43 -2.65 -37.78 16 20 C -0.24 -14.21 10.70 84.03 0.90 -13.31 16 21 H 0.09 4.79 7.83 -2.91 -0.02 4.77 16 22 C -0.07 -4.09 5.50 84.86 0.47 -3.63 16 23 N -0.95 -60.37 11.38 21.65 0.25 -60.12 16 24 Si 0.98 47.50 29.55 68.60 2.03 49.53 16 25 H -0.29 -14.07 7.11 99.48 0.71 -13.37 16 26 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 27 H -0.26 -11.77 7.11 99.48 0.71 -11.06 16 28 C 0.11 4.81 8.46 86.48 0.73 5.54 16 29 C 0.10 1.51 7.08 86.83 0.61 2.13 16 30 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.04 0.66 7.82 -2.39 -0.02 0.64 16 33 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 35 H 0.06 0.38 7.87 -2.38 -0.02 0.36 16 36 H 0.08 0.34 8.14 -2.39 -0.02 0.33 16 37 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 38 H 0.11 0.33 7.87 -2.38 -0.02 0.31 16 39 H 0.11 0.40 8.08 -2.39 -0.02 0.38 16 40 H 0.42 0.91 8.43 -92.71 -0.78 0.13 16 41 H 0.12 2.33 8.08 -2.39 -0.02 2.31 16 42 H 0.10 2.38 8.14 -2.39 -0.02 2.36 16 43 H 0.14 4.27 8.14 -2.39 -0.02 4.25 16 44 H 0.02 1.45 5.57 -2.39 -0.01 1.44 16 45 H 0.04 2.43 7.15 -2.39 -0.02 2.41 16 46 H 0.25 15.20 8.31 -92.70 -0.77 14.43 16 47 H 0.07 2.65 8.14 -2.39 -0.02 2.63 16 48 H 0.02 0.94 7.42 -2.39 -0.02 0.93 16 49 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 50 H 0.11 0.99 7.80 -2.39 -0.02 0.97 16 Total: -1.00 -92.29 405.91 1.37 -90.92 By element: Atomic # 1 Polarization: 7.64 SS G_CDS: 0.15 Total: 7.79 kcal Atomic # 6 Polarization: 21.79 SS G_CDS: 7.33 Total: 29.12 kcal Atomic # 7 Polarization: -119.95 SS G_CDS: -7.18 Total: -127.13 kcal Atomic # 8 Polarization: -49.27 SS G_CDS: -0.96 Total: -50.23 kcal Atomic # 14 Polarization: 47.50 SS G_CDS: 2.03 Total: 49.53 kcal Total: -92.29 1.37 -90.92 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108533231.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.467 kcal (2) G-P(sol) polarization free energy of solvation -92.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds