Wall clock time and date at job start Tue Mar 31 2020 23:58:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47210 * 2 1 4 4 H 1.09005 * 109.46899 * 305.00227 * 3 2 1 5 5 C 1.52997 * 109.46955 * 185.00164 * 3 2 1 6 6 O 1.42901 * 109.47556 * 64.99877 * 3 2 1 7 7 C 1.42891 * 114.00229 * 210.00298 * 6 3 2 8 8 C 1.50702 * 109.47105 * 180.02562 * 7 6 3 9 9 O 1.21277 * 119.99870 * 359.97438 * 8 7 6 10 10 N 1.34778 * 119.99758 * 180.02562 * 8 7 6 11 11 C 1.46505 * 119.99619 * 179.97438 * 10 8 7 12 12 H 1.08995 * 110.85385 * 31.21233 * 11 10 8 13 13 C 1.54619 * 110.96855 * 267.37634 * 11 10 8 14 14 C 1.51294 * 104.25793 * 266.46050 * 13 11 10 15 15 O 1.21284 * 124.94042 * 164.00880 * 14 13 11 16 16 N 1.34417 * 110.10966 * 344.15017 * 14 13 11 17 17 C 1.46503 * 124.34549 * 179.43693 * 16 14 13 18 18 C 1.53950 * 113.74146 * 320.95854 * 17 16 14 19 19 N 1.47805 * 86.03824 * 90.88395 * 18 17 16 20 20 C 1.36942 * 134.45487 * 204.64668 * 19 18 17 21 21 H 1.08002 * 119.99602 * 179.86453 * 20 19 18 22 22 C 1.38807 * 120.00184 * 359.86555 * 20 19 18 23 23 N 1.31617 * 119.99858 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 120.00250 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.47116 * 59.99643 * 24 22 20 26 26 H 1.48494 * 109.47098 * 179.97438 * 24 22 20 27 27 H 1.48498 * 109.46650 * 300.00031 * 24 22 20 28 28 C 1.47582 * 91.05413 * 24.54887 * 19 18 17 29 29 C 1.46755 * 111.30287 * 359.16618 * 16 14 13 30 30 H 1.08997 * 109.47684 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47106 * 300.00139 * 1 2 3 32 32 H 1.08998 * 109.47305 * 59.99906 * 1 2 3 33 33 H 1.09000 * 109.47106 * 239.99861 * 2 1 3 34 34 H 1.09005 * 109.47184 * 119.99693 * 2 1 3 35 35 H 1.09004 * 109.47326 * 60.00229 * 5 3 2 36 36 H 1.09004 * 109.47090 * 179.97438 * 5 3 2 37 37 H 1.08997 * 109.47298 * 299.99441 * 5 3 2 38 38 H 1.09002 * 109.47666 * 59.99779 * 7 6 3 39 39 H 1.09002 * 109.47050 * 300.00156 * 7 6 3 40 40 H 0.97001 * 120.00534 * 359.97438 * 10 8 7 41 41 H 1.08997 * 110.49280 * 25.35844 * 13 11 10 42 42 H 1.09005 * 110.48774 * 148.00534 * 13 11 10 43 43 H 1.09002 * 112.94232 * 189.36528 * 17 16 14 44 44 H 1.08999 * 113.76704 * 205.15172 * 18 17 16 45 45 H 1.09002 * 113.76463 * 336.53966 * 18 17 16 46 46 H 0.97002 * 120.00155 * 180.02562 * 23 22 20 47 47 H 1.08999 * 113.77186 * 221.15323 * 28 19 18 48 48 H 1.09004 * 113.76624 * 89.74800 * 28 19 18 49 49 H 1.09005 * 110.24528 * 136.28714 * 29 16 14 50 50 H 1.08999 * 110.24874 * 258.28426 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 3.5648 1.4443 -0.1258 6 8 1.6620 2.0815 1.2210 7 6 1.4560 3.4903 1.1002 8 6 1.0640 4.0574 2.4403 9 8 0.9698 3.3269 3.4038 10 7 0.8170 5.3762 2.5677 11 6 0.4354 5.9274 3.8704 12 1 0.8962 5.3626 4.6808 13 6 -1.1025 5.9655 4.0260 14 6 -1.4888 7.3554 3.5698 15 8 -2.6132 7.7027 3.2764 16 7 -0.4040 8.1483 3.5341 17 6 -0.4212 9.5547 3.1242 18 6 -1.3572 9.8427 1.9364 19 7 -2.3981 10.1049 2.9525 20 6 -3.7668 10.0597 2.9572 21 1 -4.3119 10.3025 3.8573 22 6 -4.4534 9.7018 1.8051 23 7 -3.7889 9.4054 0.7083 24 14 -6.3204 9.6409 1.8113 25 1 -6.8584 10.9837 2.1471 26 1 -6.8068 9.2350 0.4683 27 1 -6.7800 8.6562 2.8234 28 6 -1.3706 10.4323 3.9600 29 6 0.7988 7.4259 3.9645 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 1.8933 -0.5139 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 3.8532 0.9570 -1.0572 36 1 3.9282 2.4720 -0.1262 37 1 3.9995 0.9053 0.7161 38 1 0.6619 3.6809 0.3783 39 1 2.3769 3.9644 0.7608 40 1 0.8919 5.9604 1.7971 41 1 -1.5689 5.2101 3.3936 42 1 -1.3843 5.8185 5.0687 43 1 0.5775 9.9757 3.0082 44 1 -1.0756 10.7229 1.3586 45 1 -1.5586 8.9705 1.3143 46 1 -4.2687 9.1557 -0.0969 47 1 -1.5828 10.0301 4.9506 48 1 -1.0930 11.4862 3.9778 49 1 1.6333 7.6540 3.3015 50 1 1.0496 7.6893 4.9920 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108533232.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:58:48 Heat of formation + Delta-G solvation = -33.543592 kcal Electronic energy + Delta-G solvation = -30615.975886 eV Core-core repulsion = 26453.444636 eV Total energy + Delta-G solvation = -4162.531250 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -40.54300 -39.55103 -38.38509 -37.02259 -35.82765 -34.04473 -33.69654 -31.91125 -30.40301 -30.09196 -28.08395 -27.33343 -26.61361 -24.71692 -23.94584 -23.26233 -21.79353 -21.33635 -20.74466 -20.23273 -17.72872 -17.46165 -17.37009 -16.74282 -16.46224 -16.20536 -15.82027 -15.02800 -14.82246 -14.61658 -14.48118 -14.18578 -14.03902 -13.68789 -13.64570 -13.54840 -13.36489 -13.10233 -13.01179 -12.57724 -12.44345 -12.32927 -11.95457 -11.91667 -11.66130 -11.63013 -11.53043 -11.27762 -11.12980 -11.04194 -10.86081 -10.64542 -10.49843 -10.08337 -9.91819 -9.87081 -9.70254 -9.33748 -9.31904 -8.72083 -8.35389 -7.90178 -6.55630 -5.47010 -2.73706 2.47057 2.59140 3.49401 3.54997 3.56123 3.59225 3.61311 3.71044 4.38960 4.47583 4.62493 4.64393 4.67737 4.72555 4.79620 4.86366 4.97522 4.99988 5.04930 5.23633 5.24758 5.30207 5.31868 5.36086 5.50046 5.56295 5.64895 5.69340 5.72013 5.77135 5.80555 5.81549 5.86617 5.96459 6.04254 6.10792 6.34290 6.36013 6.55995 6.58815 6.83280 6.94907 7.31061 7.34793 7.56281 7.77398 7.91911 8.08453 8.24357 9.18429 9.30545 10.02485 10.85373 11.72198 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.013517 B = 0.002725 C = 0.002456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2070.963558 B =10273.072840 C =11395.651099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.119 4.119 3 C 0.082 3.918 4 H 0.063 0.937 5 C -0.176 4.176 6 O -0.354 6.354 7 C 0.043 3.957 8 C 0.518 3.482 9 O -0.519 6.519 10 N -0.718 5.718 11 C 0.137 3.863 12 H 0.113 0.887 13 C -0.168 4.168 14 C 0.487 3.513 15 O -0.422 6.422 16 N -0.610 5.610 17 C 0.104 3.896 18 C 0.158 3.842 19 N -0.588 5.588 20 C -0.183 4.183 21 H 0.068 0.932 22 C 0.000 4.000 23 N -0.924 5.924 24 Si 0.902 3.098 25 H -0.291 1.291 26 H -0.294 1.294 27 H -0.288 1.288 28 C 0.103 3.897 29 C 0.104 3.896 30 H 0.054 0.946 31 H 0.064 0.936 32 H 0.051 0.949 33 H 0.074 0.926 34 H 0.072 0.928 35 H 0.066 0.934 36 H 0.057 0.943 37 H 0.065 0.935 38 H 0.082 0.918 39 H 0.079 0.921 40 H 0.405 0.595 41 H 0.096 0.904 42 H 0.102 0.898 43 H 0.079 0.921 44 H 0.031 0.969 45 H 0.076 0.924 46 H 0.245 0.755 47 H 0.039 0.961 48 H 0.038 0.962 49 H 0.077 0.923 50 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.759 -13.151 -0.688 22.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.157 4.157 3 C 0.024 3.976 4 H 0.081 0.919 5 C -0.234 4.234 6 O -0.273 6.273 7 C -0.037 4.037 8 C 0.303 3.697 9 O -0.394 6.394 10 N -0.372 5.372 11 C 0.031 3.969 12 H 0.130 0.870 13 C -0.210 4.210 14 C 0.270 3.730 15 O -0.287 6.287 16 N -0.349 5.349 17 C 0.000 4.000 18 C 0.032 3.968 19 N -0.314 5.314 20 C -0.311 4.311 21 H 0.086 0.914 22 C -0.195 4.195 23 N -0.573 5.573 24 Si 0.734 3.266 25 H -0.218 1.218 26 H -0.220 1.220 27 H -0.215 1.215 28 C -0.025 4.025 29 C -0.020 4.020 30 H 0.073 0.927 31 H 0.083 0.917 32 H 0.070 0.930 33 H 0.093 0.907 34 H 0.091 0.909 35 H 0.085 0.915 36 H 0.076 0.924 37 H 0.084 0.916 38 H 0.100 0.900 39 H 0.097 0.903 40 H 0.240 0.760 41 H 0.114 0.886 42 H 0.121 0.879 43 H 0.097 0.903 44 H 0.048 0.952 45 H 0.095 0.905 46 H 0.055 0.945 47 H 0.057 0.943 48 H 0.055 0.945 49 H 0.095 0.905 50 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 17.656 -13.607 -0.141 22.291 hybrid contribution -0.866 0.495 -0.669 1.201 sum 16.789 -13.112 -0.811 21.318 Atomic orbital electron populations 1.21754 0.95173 1.01758 1.02467 1.21619 0.96827 0.94546 1.02681 1.22250 0.94288 0.94287 0.86762 0.91911 1.22309 0.96049 1.02451 1.02551 1.88047 1.89417 1.17799 1.32000 1.22233 1.01668 0.84267 0.95560 1.20220 0.77096 0.82081 0.90282 1.90730 1.50298 1.58344 1.39985 1.45879 1.70694 1.08282 1.12344 1.21809 0.95070 0.93708 0.86277 0.86956 1.22844 0.95776 0.98232 1.04163 1.20712 0.85803 0.86598 0.79840 1.91186 1.19194 1.76260 1.42104 1.47854 1.08040 1.10426 1.68542 1.22926 0.97759 0.79777 0.99573 1.22547 0.84166 0.98794 0.91321 1.45576 1.00453 1.78363 1.06998 1.18593 0.79109 1.37527 0.95860 0.91385 1.24484 0.96781 1.02359 0.95915 1.69757 1.33085 1.53525 1.00920 0.86356 0.86571 0.77381 0.76342 1.21823 1.21973 1.21501 1.22983 0.89312 0.95694 0.94474 1.22163 0.89205 0.89851 1.00823 0.92697 0.91672 0.92974 0.90729 0.90949 0.91538 0.92431 0.91599 0.90023 0.90335 0.76038 0.88589 0.87947 0.90323 0.95181 0.90540 0.94482 0.94260 0.94456 0.90478 0.90450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.81 37.16 0.36 -0.95 16 2 C -0.12 -0.92 5.64 -26.73 -0.15 -1.07 16 3 C 0.08 0.67 2.72 -26.73 -0.07 0.60 16 4 H 0.06 0.44 7.79 -51.93 -0.40 0.04 16 5 C -0.18 -1.18 9.53 37.16 0.35 -0.82 16 6 O -0.35 -3.99 9.06 -55.14 -0.50 -4.49 16 7 C 0.04 0.40 6.23 36.01 0.22 0.63 16 8 C 0.52 6.27 7.91 -10.98 -0.09 6.19 16 9 O -0.52 -8.41 16.14 -14.35 -0.23 -8.64 16 10 N -0.72 -7.59 5.12 -52.23 -0.27 -7.85 16 11 C 0.14 1.55 3.53 -66.30 -0.23 1.32 16 12 H 0.11 1.22 7.54 -51.93 -0.39 0.83 16 13 C -0.17 -2.49 6.58 -26.74 -0.18 -2.67 16 14 C 0.49 9.47 7.49 -10.86 -0.08 9.39 16 15 O -0.42 -10.97 13.05 5.55 0.07 -10.90 16 16 N -0.61 -9.80 3.16 -166.63 -0.53 -10.33 16 17 C 0.10 1.83 4.93 -70.14 -0.35 1.49 16 18 C 0.16 3.67 6.57 -2.84 -0.02 3.65 16 19 N -0.59 -15.34 2.18 -177.87 -0.39 -15.73 16 20 C -0.18 -5.40 8.88 -15.06 -0.13 -5.54 16 21 H 0.07 2.01 7.83 -52.49 -0.41 1.59 16 22 C 0.00 -0.01 5.36 -17.43 -0.09 -0.10 16 23 N -0.92 -28.44 11.39 55.49 0.63 -27.80 16 24 Si 0.90 23.88 29.55 -169.99 -5.02 18.86 16 25 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16 26 H -0.29 -7.79 7.11 56.52 0.40 -7.39 16 27 H -0.29 -7.68 7.11 56.52 0.40 -7.28 16 28 C 0.10 2.11 8.51 -2.96 -0.03 2.09 16 29 C 0.10 1.11 6.97 -3.13 -0.02 1.09 16 30 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.69 7.82 -51.93 -0.41 0.28 16 32 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 34 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.06 0.36 7.87 -51.93 -0.41 -0.05 16 37 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.08 0.66 8.09 -51.93 -0.42 0.24 16 39 H 0.08 0.53 7.87 -51.93 -0.41 0.12 16 40 H 0.40 3.65 8.66 -40.82 -0.35 3.30 16 41 H 0.10 1.54 8.09 -51.93 -0.42 1.12 16 42 H 0.10 1.39 8.14 -51.93 -0.42 0.97 16 43 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 44 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 45 H 0.08 2.03 6.78 -51.93 -0.35 1.68 16 46 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 47 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 48 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 49 H 0.08 0.67 8.08 -51.93 -0.42 0.25 16 50 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 404.06 15.07 6.09 6.09 Total: -1.00 -38.48 404.06 -9.24 -47.72 By element: Atomic # 1 Polarization: 6.40 SS G_CDS: -8.60 Total: -2.21 kcal Atomic # 6 Polarization: 15.78 SS G_CDS: -0.50 Total: 15.28 kcal Atomic # 7 Polarization: -61.17 SS G_CDS: -0.55 Total: -61.72 kcal Atomic # 8 Polarization: -23.37 SS G_CDS: -0.66 Total: -24.03 kcal Atomic # 14 Polarization: 23.88 SS G_CDS: -5.02 Total: 18.86 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -38.48 -9.24 -47.72 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108533232.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.181 kcal (2) G-P(sol) polarization free energy of solvation -38.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds