Wall clock time and date at job start Tue Mar 31 2020 22:44:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47179 * 2 1 4 4 C 1.53003 * 109.46703 * 240.00630 * 2 1 3 5 5 O 1.42901 * 109.47329 * 120.00649 * 2 1 3 6 6 C 1.42891 * 114.00229 * 59.99998 * 5 2 1 7 7 C 1.50702 * 109.47105 * 180.02562 * 6 5 2 8 8 O 1.21277 * 119.99870 * 359.97438 * 7 6 5 9 9 N 1.34778 * 119.99758 * 180.02562 * 7 6 5 10 10 C 1.46505 * 119.99619 * 179.97438 * 9 7 6 11 11 H 1.08995 * 110.85385 * 31.21233 * 10 9 7 12 12 C 1.54619 * 110.96855 * 267.37634 * 10 9 7 13 13 C 1.51294 * 104.25793 * 266.46050 * 12 10 9 14 14 O 1.21284 * 124.94042 * 164.00880 * 13 12 10 15 15 N 1.34417 * 110.10966 * 344.15017 * 13 12 10 16 16 C 1.46503 * 124.34549 * 179.43693 * 15 13 12 17 17 C 1.53950 * 113.74146 * 320.95854 * 16 15 13 18 18 N 1.47805 * 86.03824 * 90.88395 * 17 16 15 19 19 C 1.36942 * 134.45487 * 204.64668 * 18 17 16 20 20 H 1.08002 * 119.99602 * 179.86453 * 19 18 17 21 21 C 1.38807 * 120.00184 * 359.86555 * 19 18 17 22 22 N 1.31617 * 119.99858 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00250 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47116 * 59.99643 * 23 21 19 25 25 H 1.48494 * 109.47098 * 179.97438 * 23 21 19 26 26 H 1.48498 * 109.46650 * 300.00031 * 23 21 19 27 27 C 1.47582 * 91.05413 * 24.54887 * 18 17 16 28 28 C 1.46755 * 111.30287 * 359.16618 * 15 13 12 29 29 H 1.09003 * 109.47175 * 299.99065 * 1 2 3 30 30 H 1.08995 * 109.47817 * 59.99746 * 1 2 3 31 31 H 1.09000 * 109.47376 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47250 * 180.02562 * 3 2 1 33 33 H 1.08998 * 109.47430 * 300.00956 * 3 2 1 34 34 H 1.09004 * 109.46984 * 60.00716 * 3 2 1 35 35 H 1.08997 * 109.47169 * 299.99484 * 4 2 1 36 36 H 1.08993 * 109.47612 * 59.99735 * 4 2 1 37 37 H 1.08999 * 109.46949 * 179.97438 * 4 2 1 38 38 H 1.09002 * 109.47666 * 59.99779 * 6 5 2 39 39 H 1.09002 * 109.47050 * 300.00156 * 6 5 2 40 40 H 0.96997 * 120.00527 * 359.97438 * 9 7 6 41 41 H 1.08997 * 110.49280 * 25.35844 * 12 10 9 42 42 H 1.09005 * 110.48774 * 148.00534 * 12 10 9 43 43 H 1.09002 * 112.94232 * 189.36528 * 16 15 13 44 44 H 1.08999 * 113.76704 * 205.15172 * 17 16 15 45 45 H 1.09002 * 113.76463 * 336.53966 * 17 16 15 46 46 H 0.97002 * 120.00155 * 180.02562 * 22 21 19 47 47 H 1.08999 * 113.77186 * 221.15323 * 27 18 17 48 48 H 1.09004 * 113.76624 * 89.74800 * 27 18 17 49 49 H 1.09005 * 110.24528 * 136.28714 * 28 15 13 50 50 H 1.08998 * 110.25010 * 258.19324 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7211 -1.2494 5 8 2.0064 -0.6738 1.1667 6 6 1.5848 -2.0356 1.2643 7 6 2.1412 -2.6445 2.5255 8 8 2.8312 -1.9780 3.2674 9 7 1.8728 -3.9301 2.8284 10 6 2.4142 -4.5222 4.0543 11 1 2.5127 -3.7706 4.8375 12 6 3.7672 -5.2190 3.7814 13 6 3.3960 -6.6603 3.5096 14 8 4.1235 -7.4784 2.9875 15 7 2.1416 -6.9012 3.9281 16 6 1.4633 -8.1939 3.8054 17 6 1.7557 -8.9242 2.4821 18 7 2.8806 -9.5596 3.2001 19 6 4.0717 -10.1158 2.8162 20 1 4.7414 -10.5236 3.5589 21 6 4.4182 -10.1552 1.4727 22 7 3.6023 -9.6577 0.5677 23 14 6.0426 -10.9145 0.9489 24 1 6.0831 -12.3375 1.3719 25 1 6.1734 -10.8337 -0.5280 26 1 7.1623 -10.1765 1.5867 27 6 2.2063 -9.3518 4.4963 28 6 1.5411 -5.7047 4.5294 29 1 -0.3634 0.5137 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 3.1300 1.4425 -0.0005 33 1 1.6765 1.9564 -0.8899 34 1 1.6767 1.9563 0.8901 35 1 1.6766 -1.7488 -1.2494 36 1 1.6765 -0.2073 -2.1393 37 1 3.1299 -0.7208 -1.2496 38 1 1.9492 -2.5916 0.4005 39 1 0.4959 -2.0778 1.2906 40 1 1.3212 -4.4633 2.2349 41 1 4.2554 -4.7776 2.9126 42 1 4.4132 -5.1542 4.6570 43 1 0.4031 -8.1427 4.0534 44 1 0.9741 -9.6230 2.1839 45 1 2.0666 -8.2618 1.6742 46 1 3.8442 -9.6856 -0.3712 47 1 2.8763 -9.0302 5.2936 48 1 1.5572 -10.1765 4.7910 49 1 0.5160 -5.5810 4.1800 50 1 1.5621 -5.7779 5.6167 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108536842.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:44:28 Heat of formation + Delta-G solvation = -27.641792 kcal Electronic energy + Delta-G solvation = -30828.201769 eV Core-core repulsion = 26665.926440 eV Total energy + Delta-G solvation = -4162.275329 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.56229 -39.72075 -38.67218 -37.02749 -35.82471 -33.71304 -33.68470 -31.90747 -30.31227 -28.54554 -27.76263 -27.42185 -27.29877 -26.49082 -24.71406 -23.26352 -21.85955 -20.76476 -20.30039 -20.18821 -17.75050 -17.55310 -17.00879 -16.67815 -16.40024 -16.15679 -15.80934 -15.18209 -14.89256 -14.71184 -14.44878 -14.17341 -13.87661 -13.71872 -13.62875 -13.43636 -13.30208 -13.09919 -12.59431 -12.55477 -12.43921 -12.31011 -12.17136 -12.07278 -11.95325 -11.65695 -11.58657 -11.51860 -11.12867 -11.04246 -10.93611 -10.64386 -10.49670 -10.07858 -9.88735 -9.84416 -9.70042 -9.32960 -9.31636 -8.71729 -8.35069 -7.89785 -6.55413 -5.46816 -2.73499 2.48166 2.59590 3.49761 3.55411 3.56265 3.59346 3.61460 3.70666 4.39232 4.47424 4.49199 4.64275 4.66500 4.69704 4.73519 4.85324 4.96855 5.00429 5.15700 5.21958 5.25052 5.30476 5.36781 5.38656 5.49769 5.50526 5.51611 5.56824 5.69480 5.69894 5.77677 5.81187 5.91516 5.92604 5.96726 6.04868 6.34706 6.36757 6.56262 6.59048 6.85793 6.95210 7.31415 7.35792 7.56556 7.77642 7.92292 8.09715 8.24555 9.18837 9.30734 10.02677 10.85581 11.72391 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.014077 B = 0.002768 C = 0.002525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1988.561261 B =10113.737819 C =11088.365185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.105 3.895 3 C -0.137 4.137 4 C -0.182 4.182 5 O -0.351 6.351 6 C 0.038 3.962 7 C 0.518 3.482 8 O -0.520 6.520 9 N -0.718 5.718 10 C 0.137 3.863 11 H 0.113 0.887 12 C -0.168 4.168 13 C 0.487 3.513 14 O -0.422 6.422 15 N -0.610 5.610 16 C 0.104 3.896 17 C 0.158 3.842 18 N -0.588 5.588 19 C -0.183 4.183 20 H 0.068 0.932 21 C 0.000 4.000 22 N -0.924 5.924 23 Si 0.902 3.098 24 H -0.291 1.291 25 H -0.294 1.294 26 H -0.288 1.288 27 C 0.103 3.897 28 C 0.104 3.896 29 H 0.066 0.934 30 H 0.068 0.932 31 H 0.060 0.940 32 H 0.065 0.935 33 H 0.071 0.929 34 H 0.064 0.936 35 H 0.061 0.939 36 H 0.068 0.932 37 H 0.067 0.933 38 H 0.084 0.916 39 H 0.081 0.919 40 H 0.405 0.595 41 H 0.096 0.904 42 H 0.102 0.898 43 H 0.079 0.921 44 H 0.031 0.969 45 H 0.076 0.924 46 H 0.245 0.755 47 H 0.039 0.961 48 H 0.038 0.962 49 H 0.077 0.923 50 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.722 19.837 1.888 23.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.065 3.935 3 C -0.194 4.194 4 C -0.240 4.240 5 O -0.270 6.270 6 C -0.042 4.042 7 C 0.303 3.697 8 O -0.394 6.394 9 N -0.372 5.372 10 C 0.031 3.969 11 H 0.130 0.870 12 C -0.210 4.210 13 C 0.271 3.729 14 O -0.287 6.287 15 N -0.349 5.349 16 C 0.000 4.000 17 C 0.032 3.968 18 N -0.314 5.314 19 C -0.311 4.311 20 H 0.086 0.914 21 C -0.195 4.195 22 N -0.573 5.573 23 Si 0.734 3.266 24 H -0.218 1.218 25 H -0.220 1.220 26 H -0.215 1.215 27 C -0.025 4.025 28 C -0.020 4.020 29 H 0.085 0.915 30 H 0.087 0.913 31 H 0.079 0.921 32 H 0.084 0.916 33 H 0.090 0.910 34 H 0.083 0.917 35 H 0.080 0.920 36 H 0.087 0.913 37 H 0.086 0.914 38 H 0.102 0.898 39 H 0.099 0.901 40 H 0.239 0.761 41 H 0.114 0.886 42 H 0.121 0.879 43 H 0.097 0.903 44 H 0.048 0.952 45 H 0.095 0.905 46 H 0.055 0.945 47 H 0.057 0.943 48 H 0.055 0.945 49 H 0.095 0.905 50 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -10.417 19.797 2.007 22.460 hybrid contribution 0.359 -0.900 -0.810 1.263 sum -10.058 18.897 1.197 21.440 Atomic orbital electron populations 1.22458 0.95603 1.02644 1.03059 1.21596 0.93209 0.93436 0.85222 1.21739 1.02247 0.92933 1.02463 1.22472 1.02634 1.01074 0.97779 1.88092 1.74126 1.21755 1.42992 1.22225 0.99816 0.85515 0.96649 1.20234 0.80729 0.81660 0.87031 1.90726 1.37062 1.61057 1.50590 1.45871 1.54154 1.11820 1.25348 1.21805 0.93003 0.94681 0.87367 0.86955 1.22844 0.97729 0.95741 1.04707 1.20712 0.82430 0.89476 0.80330 1.91185 1.51945 1.49134 1.36484 1.47853 1.15351 1.09659 1.61992 1.22926 0.93512 0.82184 1.01414 1.22547 0.88624 0.92626 0.93033 1.45575 1.15921 1.69816 1.00076 1.18592 0.92298 1.29016 0.91173 0.91386 1.24484 0.97703 1.01756 0.95603 1.69757 1.36220 1.51557 0.99752 0.86355 0.84570 0.78567 0.77156 1.21825 1.21977 1.21502 1.22983 0.94059 0.93737 0.91681 1.22161 0.97166 0.84272 0.98444 0.91541 0.91291 0.92089 0.91597 0.91040 0.91678 0.91986 0.91285 0.91396 0.89834 0.90072 0.76055 0.88590 0.87943 0.90324 0.95183 0.90539 0.94485 0.94260 0.94459 0.90492 0.90447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.19 8.25 37.16 0.31 -0.88 16 2 C 0.10 0.88 1.14 -90.62 -0.10 0.77 16 3 C -0.14 -1.02 8.84 37.16 0.33 -0.69 16 4 C -0.18 -1.38 8.25 37.16 0.31 -1.07 16 5 O -0.35 -4.10 9.52 -55.14 -0.52 -4.63 16 6 C 0.04 0.37 5.62 36.01 0.20 0.57 16 7 C 0.52 6.42 7.91 -10.98 -0.09 6.33 16 8 O -0.52 -8.55 16.14 -14.35 -0.23 -8.79 16 9 N -0.72 -7.71 5.12 -52.23 -0.27 -7.98 16 10 C 0.14 1.57 3.53 -66.30 -0.23 1.33 16 11 H 0.11 1.23 7.54 -51.93 -0.39 0.84 16 12 C -0.17 -2.51 6.58 -26.74 -0.18 -2.68 16 13 C 0.49 9.50 7.49 -10.86 -0.08 9.42 16 14 O -0.42 -10.99 13.05 5.55 0.07 -10.92 16 15 N -0.61 -9.83 3.16 -166.63 -0.53 -10.36 16 16 C 0.10 1.84 4.93 -70.14 -0.35 1.49 16 17 C 0.16 3.68 6.57 -2.84 -0.02 3.66 16 18 N -0.59 -15.36 2.18 -177.87 -0.39 -15.75 16 19 C -0.18 -5.40 8.88 -15.06 -0.13 -5.54 16 20 H 0.07 2.01 7.83 -52.49 -0.41 1.60 16 21 C 0.00 -0.01 5.36 -17.43 -0.09 -0.11 16 22 N -0.92 -28.46 11.39 55.49 0.63 -27.83 16 23 Si 0.90 23.91 29.55 -169.99 -5.02 18.88 16 24 H -0.29 -7.54 7.11 56.52 0.40 -7.13 16 25 H -0.29 -7.80 7.11 56.52 0.40 -7.39 16 26 H -0.29 -7.69 7.11 56.52 0.40 -7.29 16 27 C 0.10 2.12 8.51 -2.96 -0.03 2.09 16 28 C 0.10 1.12 6.97 -3.13 -0.02 1.10 16 29 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.37 6.54 -51.93 -0.34 0.03 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 34 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.06 0.45 6.54 -51.93 -0.34 0.11 16 36 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.08 0.73 6.42 -51.93 -0.33 0.40 16 39 H 0.08 0.59 6.42 -51.93 -0.33 0.25 16 40 H 0.40 3.72 8.66 -40.82 -0.35 3.36 16 41 H 0.10 1.55 8.09 -51.93 -0.42 1.13 16 42 H 0.10 1.40 8.14 -51.93 -0.42 0.98 16 43 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 44 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 45 H 0.08 2.03 6.78 -51.93 -0.35 1.68 16 46 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 47 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 48 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 49 H 0.08 0.67 8.08 -51.93 -0.42 0.25 16 50 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 LS Contribution 397.32 15.07 5.99 5.99 Total: -1.00 -38.67 397.32 -8.77 -47.45 By element: Atomic # 1 Polarization: 6.45 SS G_CDS: -8.32 Total: -1.87 kcal Atomic # 6 Polarization: 15.98 SS G_CDS: -0.18 Total: 15.81 kcal Atomic # 7 Polarization: -61.37 SS G_CDS: -0.55 Total: -61.92 kcal Atomic # 8 Polarization: -23.65 SS G_CDS: -0.68 Total: -24.33 kcal Atomic # 14 Polarization: 23.91 SS G_CDS: -5.02 Total: 18.88 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -38.67 -8.77 -47.45 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108536842.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.803 kcal (2) G-P(sol) polarization free energy of solvation -38.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds