Wall clock time and date at job start Tue Mar 31 2020 22:44:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47179 * 2 1 4 4 C 1.53003 * 109.46703 * 240.00630 * 2 1 3 5 5 O 1.42901 * 109.47329 * 120.00649 * 2 1 3 6 6 C 1.42891 * 114.00229 * 59.99998 * 5 2 1 7 7 C 1.50702 * 109.47105 * 180.02562 * 6 5 2 8 8 O 1.21277 * 119.99870 * 359.97438 * 7 6 5 9 9 N 1.34778 * 119.99758 * 180.02562 * 7 6 5 10 10 C 1.46505 * 119.99619 * 179.97438 * 9 7 6 11 11 H 1.08995 * 110.85385 * 31.21233 * 10 9 7 12 12 C 1.54619 * 110.96855 * 267.37634 * 10 9 7 13 13 C 1.51294 * 104.25793 * 266.46050 * 12 10 9 14 14 O 1.21284 * 124.94042 * 164.00880 * 13 12 10 15 15 N 1.34417 * 110.10966 * 344.15017 * 13 12 10 16 16 C 1.46503 * 124.34549 * 179.43693 * 15 13 12 17 17 C 1.53950 * 113.74146 * 320.95854 * 16 15 13 18 18 N 1.47805 * 86.03824 * 90.88395 * 17 16 15 19 19 C 1.36942 * 134.45487 * 204.64668 * 18 17 16 20 20 H 1.08002 * 119.99602 * 179.86453 * 19 18 17 21 21 C 1.38807 * 120.00184 * 359.86555 * 19 18 17 22 22 N 1.31617 * 119.99858 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00250 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47116 * 59.99643 * 23 21 19 25 25 H 1.48494 * 109.47098 * 179.97438 * 23 21 19 26 26 H 1.48498 * 109.46650 * 300.00031 * 23 21 19 27 27 C 1.47582 * 91.05413 * 24.54887 * 18 17 16 28 28 C 1.46755 * 111.30287 * 359.16618 * 15 13 12 29 29 H 1.09003 * 109.47175 * 299.99065 * 1 2 3 30 30 H 1.08995 * 109.47817 * 59.99746 * 1 2 3 31 31 H 1.09000 * 109.47376 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47250 * 180.02562 * 3 2 1 33 33 H 1.08998 * 109.47430 * 300.00956 * 3 2 1 34 34 H 1.09004 * 109.46984 * 60.00716 * 3 2 1 35 35 H 1.08997 * 109.47169 * 299.99484 * 4 2 1 36 36 H 1.08993 * 109.47612 * 59.99735 * 4 2 1 37 37 H 1.08999 * 109.46949 * 179.97438 * 4 2 1 38 38 H 1.09002 * 109.47666 * 59.99779 * 6 5 2 39 39 H 1.09002 * 109.47050 * 300.00156 * 6 5 2 40 40 H 0.96997 * 120.00527 * 359.97438 * 9 7 6 41 41 H 1.08997 * 110.49280 * 25.35844 * 12 10 9 42 42 H 1.09005 * 110.48774 * 148.00534 * 12 10 9 43 43 H 1.09002 * 112.94232 * 189.36528 * 16 15 13 44 44 H 1.08999 * 113.76704 * 205.15172 * 17 16 15 45 45 H 1.09002 * 113.76463 * 336.53966 * 17 16 15 46 46 H 0.97002 * 120.00155 * 180.02562 * 22 21 19 47 47 H 1.08999 * 113.77186 * 221.15323 * 27 18 17 48 48 H 1.09004 * 113.76624 * 89.74800 * 27 18 17 49 49 H 1.09005 * 110.24528 * 136.28714 * 28 15 13 50 50 H 1.08998 * 110.25010 * 258.19324 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7211 -1.2494 5 8 2.0064 -0.6738 1.1667 6 6 1.5848 -2.0356 1.2643 7 6 2.1412 -2.6445 2.5255 8 8 2.8312 -1.9780 3.2674 9 7 1.8728 -3.9301 2.8284 10 6 2.4142 -4.5222 4.0543 11 1 2.5127 -3.7706 4.8375 12 6 3.7672 -5.2190 3.7814 13 6 3.3960 -6.6603 3.5096 14 8 4.1235 -7.4784 2.9875 15 7 2.1416 -6.9012 3.9281 16 6 1.4633 -8.1939 3.8054 17 6 1.7557 -8.9242 2.4821 18 7 2.8806 -9.5596 3.2001 19 6 4.0717 -10.1158 2.8162 20 1 4.7414 -10.5236 3.5589 21 6 4.4182 -10.1552 1.4727 22 7 3.6023 -9.6577 0.5677 23 14 6.0426 -10.9145 0.9489 24 1 6.0831 -12.3375 1.3719 25 1 6.1734 -10.8337 -0.5280 26 1 7.1623 -10.1765 1.5867 27 6 2.2063 -9.3518 4.4963 28 6 1.5411 -5.7047 4.5294 29 1 -0.3634 0.5137 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 3.1300 1.4425 -0.0005 33 1 1.6765 1.9564 -0.8899 34 1 1.6767 1.9563 0.8901 35 1 1.6766 -1.7488 -1.2494 36 1 1.6765 -0.2073 -2.1393 37 1 3.1299 -0.7208 -1.2496 38 1 1.9492 -2.5916 0.4005 39 1 0.4959 -2.0778 1.2906 40 1 1.3212 -4.4633 2.2349 41 1 4.2554 -4.7776 2.9126 42 1 4.4132 -5.1542 4.6570 43 1 0.4031 -8.1427 4.0534 44 1 0.9741 -9.6230 2.1839 45 1 2.0666 -8.2618 1.6742 46 1 3.8442 -9.6856 -0.3712 47 1 2.8763 -9.0302 5.2936 48 1 1.5572 -10.1765 4.7910 49 1 0.5160 -5.5810 4.1800 50 1 1.5621 -5.7779 5.6167 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108536842.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:44:27 Heat of formation + Delta-G solvation = -55.660955 kcal Electronic energy + Delta-G solvation = -30829.416771 eV Core-core repulsion = 26665.926440 eV Total energy + Delta-G solvation = -4163.490331 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.76522 -40.76245 -39.58711 -38.58901 -37.25940 -34.95479 -34.39235 -33.89348 -31.63588 -29.47411 -29.05983 -28.29281 -28.26641 -27.46811 -26.46013 -25.10932 -22.84254 -22.09617 -21.58964 -20.90590 -19.21572 -18.67502 -18.44268 -17.96426 -17.36588 -17.08369 -16.96135 -16.75691 -16.19067 -16.00741 -15.59029 -15.55176 -15.18093 -15.11113 -14.72446 -14.47436 -14.36375 -14.12854 -14.02288 -13.89302 -13.31513 -13.17783 -13.10874 -13.03974 -12.86054 -12.78100 -12.75521 -12.64723 -12.64279 -12.52055 -12.41976 -12.20724 -11.91776 -11.58027 -11.56647 -11.34833 -10.83731 -10.76056 -10.59250 -10.42560 -9.96527 -9.31945 -8.60397 -7.70636 -4.94123 1.39363 1.44464 1.47906 1.52833 1.76811 2.05141 2.24488 2.57460 2.97607 3.44423 3.47220 3.55742 3.65005 3.71623 3.90530 3.92966 3.95510 3.98965 4.09619 4.18309 4.26254 4.29508 4.49652 4.65147 4.65921 4.67997 4.69803 4.73548 4.81264 4.82715 4.83911 4.87397 4.93763 4.95212 4.95905 4.98593 5.17292 5.28504 5.34749 5.37286 5.37485 5.42956 5.64608 6.08514 6.17200 6.18975 6.50246 6.53951 7.10467 7.17959 7.73091 7.84229 8.76094 9.47617 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.014077 B = 0.002768 C = 0.002525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1988.561261 B =10113.737819 C =11088.365185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.096 3.904 3 C -0.138 4.138 4 C -0.181 4.181 5 O -0.383 6.383 6 C 0.039 3.961 7 C 0.517 3.483 8 O -0.565 6.565 9 N -0.708 5.708 10 C 0.147 3.853 11 H 0.127 0.873 12 C -0.161 4.161 13 C 0.477 3.523 14 O -0.502 6.502 15 N -0.606 5.606 16 C 0.136 3.864 17 C 0.153 3.847 18 N -0.619 5.619 19 C -0.179 4.179 20 H 0.056 0.944 21 C -0.058 4.058 22 N -0.947 5.947 23 Si 0.953 3.047 24 H -0.280 1.280 25 H -0.296 1.296 26 H -0.295 1.295 27 C 0.101 3.899 28 C 0.108 3.892 29 H 0.062 0.938 30 H 0.084 0.916 31 H 0.068 0.932 32 H 0.051 0.949 33 H 0.094 0.906 34 H 0.059 0.941 35 H 0.064 0.936 36 H 0.086 0.914 37 H 0.051 0.949 38 H 0.092 0.908 39 H 0.112 0.888 40 H 0.414 0.586 41 H 0.076 0.924 42 H 0.114 0.886 43 H 0.140 0.860 44 H 0.028 0.972 45 H 0.036 0.964 46 H 0.235 0.765 47 H 0.034 0.966 48 H 0.063 0.937 49 H 0.114 0.886 50 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.633 20.974 3.113 25.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.057 3.943 3 C -0.195 4.195 4 C -0.239 4.239 5 O -0.303 6.303 6 C -0.040 4.040 7 C 0.304 3.696 8 O -0.443 6.443 9 N -0.362 5.362 10 C 0.041 3.959 11 H 0.144 0.856 12 C -0.203 4.203 13 C 0.263 3.737 14 O -0.373 6.373 15 N -0.342 5.342 16 C 0.032 3.968 17 C 0.026 3.974 18 N -0.345 5.345 19 C -0.309 4.309 20 H 0.074 0.926 21 C -0.250 4.250 22 N -0.599 5.599 23 Si 0.784 3.216 24 H -0.206 1.206 25 H -0.222 1.222 26 H -0.222 1.222 27 C -0.025 4.025 28 C -0.014 4.014 29 H 0.081 0.919 30 H 0.103 0.897 31 H 0.087 0.913 32 H 0.070 0.930 33 H 0.112 0.888 34 H 0.078 0.922 35 H 0.083 0.917 36 H 0.105 0.895 37 H 0.070 0.930 38 H 0.110 0.890 39 H 0.130 0.870 40 H 0.251 0.749 41 H 0.094 0.906 42 H 0.132 0.868 43 H 0.158 0.842 44 H 0.046 0.954 45 H 0.054 0.946 46 H 0.044 0.956 47 H 0.052 0.948 48 H 0.080 0.920 49 H 0.132 0.868 50 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -13.407 20.947 3.280 25.085 hybrid contribution 1.248 -1.199 -1.110 2.056 sum -12.159 19.748 2.169 23.292 Atomic orbital electron populations 1.22427 0.93914 1.03343 1.03685 1.21836 0.94572 0.93408 0.84435 1.21788 1.01434 0.92915 1.03337 1.22473 1.01652 1.01469 0.98277 1.88056 1.75087 1.22580 1.44585 1.22313 1.01403 0.84961 0.95355 1.20738 0.79830 0.81733 0.87305 1.90704 1.39174 1.62234 1.52222 1.45835 1.53586 1.11447 1.25324 1.21792 0.91017 0.95168 0.87887 0.85570 1.22762 1.00050 0.93144 1.04312 1.21438 0.82901 0.90448 0.78942 1.91143 1.54347 1.51732 1.40082 1.47950 1.14473 1.10800 1.60995 1.22591 0.96194 0.81771 0.96284 1.22501 0.87677 0.92674 0.94508 1.45891 1.15804 1.69669 1.03184 1.18748 0.93735 1.27447 0.90942 0.92608 1.25096 1.00478 1.03446 0.95976 1.69933 1.37401 1.53393 0.99128 0.85526 0.81402 0.78277 0.76377 1.20611 1.22211 1.22221 1.23227 0.94004 0.95710 0.89608 1.22519 0.98126 0.80817 0.99941 0.91926 0.89664 0.91332 0.92950 0.88766 0.92179 0.91715 0.89487 0.92975 0.88987 0.87019 0.74890 0.90584 0.86803 0.84227 0.95429 0.94580 0.95610 0.94765 0.91978 0.86797 0.87292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.90 8.25 71.98 0.59 -1.30 16 2 C 0.10 1.49 1.14 -10.79 -0.01 1.48 16 3 C -0.14 -1.94 8.84 71.98 0.64 -1.31 16 4 C -0.18 -2.53 8.25 71.98 0.59 -1.93 16 5 O -0.38 -8.70 9.52 -129.94 -1.24 -9.94 16 6 C 0.04 0.70 5.62 71.24 0.40 1.10 16 7 C 0.52 12.11 7.91 87.66 0.69 12.80 16 8 O -0.57 -18.32 16.14 16.02 0.26 -18.06 16 9 N -0.71 -13.53 5.12 -437.54 -2.24 -15.77 16 10 C 0.15 2.94 3.53 46.05 0.16 3.10 16 11 H 0.13 2.34 7.54 -2.39 -0.02 2.33 16 12 C -0.16 -4.69 6.58 30.59 0.20 -4.49 16 13 C 0.48 18.51 7.49 87.90 0.66 19.17 16 14 O -0.50 -27.11 13.05 -3.04 -0.04 -27.15 16 15 N -0.61 -17.80 3.16 -799.68 -2.52 -20.32 16 16 C 0.14 4.36 4.93 46.75 0.23 4.59 16 17 C 0.15 7.05 6.57 86.44 0.57 7.62 16 18 N -0.62 -32.57 2.18 -716.67 -1.57 -34.14 16 19 C -0.18 -10.89 8.88 84.03 0.75 -10.14 16 20 H 0.06 3.40 7.83 -2.91 -0.02 3.38 16 21 C -0.06 -3.60 5.36 84.86 0.45 -3.14 16 22 N -0.95 -60.57 11.39 21.65 0.25 -60.33 16 23 Si 0.95 50.85 29.55 68.60 2.03 52.87 16 24 H -0.28 -14.19 7.11 99.48 0.71 -13.48 16 25 H -0.30 -15.71 7.11 99.48 0.71 -15.00 16 26 H -0.29 -15.84 7.11 99.48 0.71 -15.13 16 27 C 0.10 3.93 8.51 86.49 0.74 4.66 16 28 C 0.11 1.79 6.97 86.83 0.61 2.39 16 29 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.07 0.62 6.54 -2.39 -0.02 0.61 16 32 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.06 0.89 8.14 -2.38 -0.02 0.87 16 35 H 0.06 0.85 6.54 -2.39 -0.02 0.83 16 36 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.09 1.48 6.42 -2.39 -0.02 1.47 16 39 H 0.11 1.29 6.42 -2.39 -0.02 1.27 16 40 H 0.41 6.41 8.66 -92.71 -0.80 5.61 16 41 H 0.08 2.53 8.09 -2.39 -0.02 2.51 16 42 H 0.11 3.03 8.14 -2.38 -0.02 3.01 16 43 H 0.14 2.96 8.14 -2.39 -0.02 2.94 16 44 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 45 H 0.04 1.96 6.78 -2.39 -0.02 1.94 16 46 H 0.23 14.88 8.31 -92.71 -0.77 14.11 16 47 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 48 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 49 H 0.11 1.20 8.08 -2.38 -0.02 1.18 16 50 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 Total: -1.00 -91.35 397.32 2.33 -89.02 By element: Atomic # 1 Polarization: 9.07 SS G_CDS: 0.14 Total: 9.20 kcal Atomic # 6 Polarization: 27.33 SS G_CDS: 7.27 Total: 34.60 kcal Atomic # 7 Polarization: -124.47 SS G_CDS: -6.08 Total: -130.56 kcal Atomic # 8 Polarization: -54.12 SS G_CDS: -1.02 Total: -55.14 kcal Atomic # 14 Polarization: 50.85 SS G_CDS: 2.03 Total: 52.87 kcal Total: -91.35 2.33 -89.02 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108536842.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.360 kcal (2) G-P(sol) polarization free energy of solvation -91.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds