Wall clock time and date at job start Tue Mar 31 2020 22:44:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42896 * 114.00434 * 2 1 4 4 C 1.52996 * 109.47538 * 179.97438 * 3 2 1 5 5 C 1.53002 * 109.47006 * 59.99835 * 4 3 2 6 6 C 1.53003 * 109.47041 * 300.00227 * 4 3 2 7 7 C 1.50693 * 109.47135 * 179.97438 * 4 3 2 8 8 O 1.21284 * 120.00130 * 0.02562 * 7 4 3 9 9 N 1.34777 * 120.00062 * 180.27305 * 7 4 3 10 10 C 1.46501 * 120.00421 * 179.72622 * 9 7 4 11 11 H 1.08997 * 110.85400 * 37.34279 * 10 9 7 12 12 C 1.54624 * 110.97023 * 273.55337 * 10 9 7 13 13 C 1.51283 * 104.19481 * 266.67633 * 12 10 9 14 14 O 1.21276 * 124.94639 * 163.78212 * 13 12 10 15 15 N 1.34424 * 110.11352 * 343.74585 * 13 12 10 16 16 C 1.46499 * 124.34796 * 179.56944 * 15 13 12 17 17 C 1.53949 * 113.74403 * 38.76982 * 16 15 13 18 18 N 1.47813 * 86.03669 * 222.08312 * 17 16 15 19 19 C 1.36934 * 134.45598 * 204.64071 * 18 17 16 20 20 H 1.07993 * 120.00236 * 173.34558 * 19 18 17 21 21 C 1.38813 * 120.00021 * 353.35050 * 19 18 17 22 22 N 1.31625 * 120.00014 * 5.06033 * 21 19 18 23 23 Si 1.86796 * 120.00340 * 185.06180 * 21 19 18 24 24 H 1.48503 * 109.47408 * 94.98488 * 23 21 19 25 25 H 1.48501 * 109.47491 * 214.98685 * 23 21 19 26 26 H 1.48496 * 109.47148 * 334.98892 * 23 21 19 27 27 C 1.47578 * 91.05089 * 24.54765 * 18 17 16 28 28 C 1.46758 * 111.30170 * 359.59456 * 15 13 12 29 29 H 1.08996 * 109.46306 * 60.00209 * 1 2 3 30 30 H 1.08999 * 109.46998 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47006 * 300.00166 * 1 2 3 32 32 H 1.09006 * 109.47057 * 59.99326 * 3 2 1 33 33 H 1.09000 * 109.46803 * 300.00323 * 3 2 1 34 34 H 1.08989 * 109.47551 * 179.97438 * 5 4 3 35 35 H 1.09004 * 109.47030 * 300.00090 * 5 4 3 36 36 H 1.09008 * 109.46967 * 59.99730 * 5 4 3 37 37 H 1.08998 * 109.46396 * 299.99291 * 6 4 3 38 38 H 1.08995 * 109.47117 * 60.00154 * 6 4 3 39 39 H 1.08996 * 109.46451 * 179.97438 * 6 4 3 40 40 H 0.97003 * 119.99646 * 359.72942 * 9 7 4 41 41 H 1.08995 * 110.48788 * 25.35246 * 12 10 9 42 42 H 1.08998 * 110.48893 * 148.00255 * 12 10 9 43 43 H 1.09004 * 112.94495 * 170.36150 * 16 15 13 44 44 H 1.09005 * 113.76341 * 336.34973 * 17 16 15 45 45 H 1.09000 * 113.77255 * 107.73930 * 17 16 15 46 46 H 0.96993 * 120.00123 * 179.97438 * 22 21 19 47 47 H 1.09001 * 113.76989 * 221.14858 * 27 18 17 48 48 H 1.09000 * 113.76881 * 89.75499 * 27 18 17 49 49 H 1.08995 * 110.24694 * 258.01478 * 28 15 13 50 50 H 1.09003 * 110.24878 * 136.01474 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0104 1.3054 0.0000 4 6 3.5356 1.1846 0.0006 5 6 3.9875 0.4250 -1.2483 6 6 3.9865 0.4255 1.2502 7 6 4.1485 2.5612 0.0000 8 8 3.4356 3.5424 -0.0004 9 7 5.4889 2.7021 -0.0051 10 6 6.0848 4.0404 -0.0118 11 1 5.5051 4.7264 0.6057 12 6 6.2232 4.5774 -1.4552 13 6 7.6251 4.1833 -1.8649 14 8 8.0367 4.1663 -3.0055 15 7 8.3486 3.8554 -0.7804 16 6 9.7461 3.4176 -0.8205 17 6 10.6022 4.1709 -1.8548 18 7 11.1870 2.8526 -2.1788 19 6 12.3745 2.4369 -2.7192 20 1 12.6106 1.3838 -2.7587 21 6 13.2751 3.3691 -3.2161 22 7 13.0336 4.6556 -3.0785 23 14 14.8295 2.7977 -4.0801 24 1 14.5976 2.7656 -5.5466 25 1 15.9391 3.7364 -3.7749 26 1 15.1878 1.4369 -3.6058 27 6 9.9787 2.1647 -1.6842 28 6 7.5585 3.9917 0.4488 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.6887 1.8464 0.8900 33 1 1.6887 1.8463 -0.8900 34 1 5.0740 0.3393 -1.2481 35 1 3.5441 -0.5708 -1.2482 36 1 3.6662 0.9658 -2.1385 37 1 3.6646 0.9667 2.1399 38 1 3.5432 -0.5703 1.2502 39 1 5.0730 0.3390 1.2503 40 1 6.0590 1.9173 -0.0045 41 1 5.4885 4.1076 -2.1091 42 1 6.1117 5.6615 -1.4713 43 1 10.2019 3.3600 0.1680 44 1 10.0240 4.6073 -2.6694 45 1 11.3112 4.8706 -1.4124 46 1 13.6630 5.3070 -3.4254 47 1 10.1908 1.2655 -1.1058 48 1 9.2170 2.0104 -2.4486 49 1 7.8225 4.9138 0.9666 50 1 7.7221 3.1327 1.0996 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108556934.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:44:34 Heat of formation + Delta-G solvation = -79.775078 kcal Electronic energy + Delta-G solvation = -30611.950587 eV Core-core repulsion = 26447.414589 eV Total energy + Delta-G solvation = -4164.535998 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.02771 -41.05976 -39.11846 -38.73054 -37.60818 -35.91329 -35.03006 -34.05443 -31.59967 -29.18955 -28.55594 -28.24222 -28.15390 -26.60731 -26.51635 -25.29061 -24.25030 -22.30204 -22.08299 -20.56055 -19.69725 -18.79276 -18.15583 -18.00557 -17.70479 -16.94014 -16.88118 -16.80518 -16.55231 -16.17284 -15.93017 -15.68189 -15.46080 -15.11901 -14.82823 -14.64313 -14.37291 -14.24205 -14.14881 -13.90081 -13.44771 -13.37185 -13.28090 -13.18353 -13.05436 -12.85558 -12.76968 -12.75338 -12.67561 -12.47057 -12.35425 -12.03324 -12.01608 -11.85972 -11.69073 -11.51803 -11.07049 -10.77268 -10.65600 -10.61127 -10.13019 -9.55280 -8.92796 -7.94681 -5.27808 1.42115 1.46019 1.53483 1.54495 1.63028 1.92698 2.01950 2.48056 2.92533 3.23807 3.34967 3.45979 3.48632 3.53998 3.79267 3.81522 3.86919 3.89350 4.15872 4.23462 4.26927 4.45903 4.50380 4.53550 4.62227 4.63631 4.63851 4.69411 4.77086 4.78667 4.80579 4.84858 4.88264 4.89200 4.93189 4.95011 5.00418 5.19383 5.26064 5.29857 5.36285 5.41772 5.48187 5.86092 5.90014 6.16925 6.27919 6.44361 6.87612 7.14102 7.26559 7.57143 8.53311 9.23466 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.022631 B = 0.002302 C = 0.002205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.960117 B =12162.815511 C =12693.553581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.399 6.399 3 C 0.088 3.912 4 C -0.077 4.077 5 C -0.136 4.136 6 C -0.132 4.132 7 C 0.533 3.467 8 O -0.570 6.570 9 N -0.708 5.708 10 C 0.147 3.853 11 H 0.134 0.866 12 C -0.156 4.156 13 C 0.502 3.498 14 O -0.576 6.576 15 N -0.606 5.606 16 C 0.138 3.862 17 C 0.149 3.851 18 N -0.636 5.636 19 C -0.235 4.235 20 H 0.088 0.912 21 C -0.071 4.071 22 N -0.953 5.953 23 Si 0.981 3.019 24 H -0.293 1.293 25 H -0.291 1.291 26 H -0.260 1.260 27 C 0.115 3.885 28 C 0.096 3.904 29 H 0.043 0.957 30 H 0.101 0.899 31 H 0.048 0.952 32 H 0.054 0.946 33 H 0.044 0.956 34 H 0.070 0.930 35 H 0.080 0.920 36 H 0.047 0.953 37 H 0.061 0.939 38 H 0.077 0.923 39 H 0.077 0.923 40 H 0.413 0.587 41 H 0.092 0.908 42 H 0.126 0.874 43 H 0.139 0.861 44 H 0.021 0.979 45 H 0.036 0.964 46 H 0.248 0.752 47 H 0.072 0.928 48 H 0.022 0.978 49 H 0.113 0.887 50 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.484 -7.830 15.407 29.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.318 6.318 3 C 0.011 3.989 4 C -0.081 4.081 5 C -0.193 4.193 6 C -0.190 4.190 7 C 0.320 3.680 8 O -0.449 6.449 9 N -0.360 5.360 10 C 0.041 3.959 11 H 0.152 0.848 12 C -0.197 4.197 13 C 0.291 3.709 14 O -0.455 6.455 15 N -0.339 5.339 16 C 0.034 3.966 17 C 0.023 3.977 18 N -0.363 5.363 19 C -0.364 4.364 20 H 0.106 0.894 21 C -0.264 4.264 22 N -0.602 5.602 23 Si 0.809 3.191 24 H -0.221 1.221 25 H -0.218 1.218 26 H -0.184 1.184 27 C -0.012 4.012 28 C -0.025 4.025 29 H 0.062 0.938 30 H 0.120 0.880 31 H 0.067 0.933 32 H 0.073 0.927 33 H 0.062 0.938 34 H 0.089 0.911 35 H 0.099 0.901 36 H 0.066 0.934 37 H 0.080 0.920 38 H 0.096 0.904 39 H 0.096 0.904 40 H 0.251 0.749 41 H 0.110 0.890 42 H 0.144 0.856 43 H 0.157 0.843 44 H 0.039 0.961 45 H 0.055 0.945 46 H 0.057 0.943 47 H 0.090 0.910 48 H 0.039 0.961 49 H 0.130 0.870 50 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -24.274 -7.316 14.717 29.314 hybrid contribution 0.989 0.144 -1.390 1.712 sum -23.285 -7.172 13.326 27.771 Atomic orbital electron populations 1.22913 0.79574 1.03905 1.00599 1.87778 1.21123 1.27406 1.95542 1.22139 0.91622 0.84372 1.00774 1.20706 0.94719 0.92394 1.00247 1.21801 1.02017 1.01008 0.94512 1.21790 1.02410 1.00745 0.94009 1.20576 0.82300 0.90879 0.74254 1.90704 1.61737 1.41602 1.50853 1.45948 1.06436 1.09115 1.74484 1.21852 0.93956 0.85319 0.94755 0.84830 1.22778 0.92944 1.04848 0.99131 1.21522 0.89152 0.75926 0.84344 1.90762 1.76914 1.54905 1.22949 1.48472 1.11440 1.65668 1.08310 1.23377 0.78932 0.94408 0.99860 1.22538 0.91670 0.89574 0.93924 1.46128 1.12382 1.04042 1.73719 1.19436 0.92282 0.92877 1.31768 0.89409 1.25772 1.02938 0.95471 1.02195 1.70052 1.38206 1.00628 1.51273 0.85017 0.78285 0.77881 0.77913 1.22073 1.21758 1.18402 1.22998 0.87583 0.96198 0.94378 1.22698 0.87415 1.06189 0.86229 0.93839 0.88033 0.93320 0.92750 0.93755 0.91079 0.90062 0.93395 0.92005 0.90409 0.90361 0.74944 0.88958 0.85589 0.84300 0.96127 0.94549 0.94293 0.91019 0.96062 0.86950 0.86552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 11.01 113.37 1.25 1.53 16 2 O -0.40 -6.34 9.35 -148.98 -1.39 -7.74 16 3 C 0.09 1.47 4.09 71.98 0.29 1.76 16 4 C -0.08 -1.14 0.70 -52.93 -0.04 -1.17 16 5 C -0.14 -1.98 8.22 71.98 0.59 -1.39 16 6 C -0.13 -1.40 8.23 71.98 0.59 -0.81 16 7 C 0.53 9.39 6.48 87.65 0.57 9.96 16 8 O -0.57 -13.82 15.72 -3.04 -0.05 -13.87 16 9 N -0.71 -9.93 4.94 -437.54 -2.16 -12.09 16 10 C 0.15 2.16 3.43 46.05 0.16 2.32 16 11 H 0.13 1.66 7.72 -2.39 -0.02 1.64 16 12 C -0.16 -3.45 6.58 30.59 0.20 -3.25 16 13 C 0.50 16.48 7.42 87.90 0.65 17.13 16 14 O -0.58 -26.77 14.61 -3.02 -0.04 -26.81 16 15 N -0.61 -16.39 3.16 -799.70 -2.52 -18.92 16 16 C 0.14 4.85 4.81 46.75 0.22 5.08 16 17 C 0.15 7.61 6.81 86.44 0.59 8.20 16 18 N -0.64 -34.40 3.70 -716.65 -2.65 -37.05 16 19 C -0.24 -13.76 10.70 84.03 0.90 -12.86 16 20 H 0.09 4.83 7.83 -2.91 -0.02 4.81 16 21 C -0.07 -4.22 5.50 84.86 0.47 -3.75 16 22 N -0.95 -60.61 11.51 21.65 0.25 -60.36 16 23 Si 0.98 47.36 29.56 68.60 2.03 49.39 16 24 H -0.29 -14.25 7.11 99.48 0.71 -13.54 16 25 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 26 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 27 C 0.11 4.73 8.44 86.49 0.73 5.46 16 28 C 0.10 1.36 6.96 86.83 0.60 1.96 16 29 H 0.04 0.45 8.14 -2.39 -0.02 0.43 16 30 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 32 H 0.05 0.92 8.10 -2.38 -0.02 0.90 16 33 H 0.04 0.84 8.10 -2.39 -0.02 0.82 16 34 H 0.07 0.91 7.55 -2.39 -0.02 0.89 16 35 H 0.08 1.15 7.68 -2.39 -0.02 1.13 16 36 H 0.05 0.82 8.14 -2.38 -0.02 0.80 16 37 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 38 H 0.08 0.86 7.68 -2.39 -0.02 0.85 16 39 H 0.08 0.58 7.57 -2.39 -0.02 0.56 16 40 H 0.41 4.57 7.41 -92.71 -0.69 3.88 16 41 H 0.09 2.24 8.09 -2.39 -0.02 2.23 16 42 H 0.13 2.45 8.14 -2.39 -0.02 2.43 16 43 H 0.14 4.04 8.14 -2.38 -0.02 4.02 16 44 H 0.02 1.22 5.72 -2.38 -0.01 1.21 16 45 H 0.04 2.03 7.37 -2.39 -0.02 2.01 16 46 H 0.25 15.27 8.31 -92.71 -0.77 14.50 16 47 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 48 H 0.02 0.97 7.25 -2.39 -0.02 0.96 16 49 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 50 H 0.12 1.01 8.04 -2.39 -0.02 0.99 16 Total: -1.00 -85.84 400.95 1.48 -84.36 By element: Atomic # 1 Polarization: 12.67 SS G_CDS: 0.25 Total: 12.92 kcal Atomic # 6 Polarization: 22.37 SS G_CDS: 7.78 Total: 30.15 kcal Atomic # 7 Polarization: -121.32 SS G_CDS: -7.09 Total: -128.41 kcal Atomic # 8 Polarization: -46.92 SS G_CDS: -1.49 Total: -48.41 kcal Atomic # 14 Polarization: 47.36 SS G_CDS: 2.03 Total: 49.39 kcal Total: -85.84 1.48 -84.36 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108556934.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.585 kcal (2) G-P(sol) polarization free energy of solvation -85.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds