Wall clock time and date at job start Tue Mar 31 2020 22:27:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.47063 * 2 1 4 4 C 1.53002 * 109.46754 * 179.97438 * 3 2 1 5 5 H 1.09002 * 109.47070 * 55.00009 * 4 3 2 6 6 O 1.42898 * 109.47113 * 294.99879 * 4 3 2 7 7 C 1.42902 * 113.99874 * 150.00334 * 6 4 3 8 8 C 1.50703 * 109.46966 * 174.99919 * 4 3 2 9 9 O 1.21282 * 120.00069 * 114.99802 * 8 4 3 10 10 N 1.34770 * 119.99967 * 295.00335 * 8 4 3 11 11 C 1.46504 * 120.00306 * 180.02562 * 10 8 4 12 12 H 1.09001 * 110.85165 * 322.66257 * 11 10 8 13 13 C 1.54625 * 110.96991 * 86.44989 * 11 10 8 14 14 C 1.51276 * 104.19720 * 142.92309 * 13 11 10 15 15 O 1.21275 * 124.94658 * 163.71684 * 14 13 11 16 16 N 1.34423 * 110.11514 * 343.74499 * 14 13 11 17 17 C 1.46495 * 124.35294 * 179.57460 * 16 14 13 18 18 C 1.53951 * 113.74309 * 38.71792 * 17 16 14 19 19 N 1.47810 * 86.03599 * 222.08795 * 18 17 16 20 20 C 1.36939 * 134.45481 * 204.64802 * 19 18 17 21 21 H 1.08007 * 120.00022 * 179.86535 * 20 19 18 22 22 C 1.38815 * 120.00083 * 359.85940 * 20 19 18 23 23 N 1.31620 * 119.99813 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 119.99904 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47428 * 59.99944 * 24 22 20 26 26 H 1.48498 * 109.46847 * 179.97438 * 24 22 20 27 27 H 1.48498 * 109.47009 * 299.99905 * 24 22 20 28 28 C 1.47585 * 91.05434 * 24.54634 * 19 18 17 29 29 C 1.46765 * 111.29738 * 359.59248 * 16 14 13 30 30 H 1.08994 * 109.47265 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47089 * 300.00168 * 1 2 3 32 32 H 1.08996 * 109.46735 * 60.00071 * 1 2 3 33 33 H 1.09000 * 109.47089 * 239.99832 * 2 1 3 34 34 H 1.09000 * 109.47173 * 119.99756 * 2 1 3 35 35 H 1.09000 * 109.47306 * 59.99965 * 3 2 1 36 36 H 1.08996 * 109.47287 * 299.99590 * 3 2 1 37 37 H 1.08997 * 109.47374 * 59.99540 * 7 6 4 38 38 H 1.09001 * 109.47118 * 179.97438 * 7 6 4 39 39 H 1.09002 * 109.47082 * 300.00110 * 7 6 4 40 40 H 0.97005 * 120.00514 * 0.02562 * 10 8 4 41 41 H 1.09005 * 110.48728 * 261.59633 * 13 11 10 42 42 H 1.09001 * 110.48873 * 24.11099 * 13 11 10 43 43 H 1.09001 * 112.94799 * 170.30969 * 17 16 14 44 44 H 1.08999 * 113.76512 * 336.34634 * 18 17 16 45 45 H 1.08995 * 113.77014 * 107.74621 * 18 17 16 46 46 H 0.96996 * 119.99725 * 180.02562 * 23 22 20 47 47 H 1.09001 * 113.76925 * 221.15696 * 28 19 18 48 48 H 1.08992 * 113.76832 * 89.75717 * 28 19 18 49 49 H 1.08998 * 110.24669 * 258.01215 * 29 16 14 50 50 H 1.09002 * 110.24139 * 136.01839 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 1 3.9337 0.8529 -0.8409 6 8 4.0458 0.8733 1.2220 7 6 5.3055 0.2093 1.1018 8 6 4.0725 2.8578 -0.1232 9 8 4.6927 3.3631 0.7883 10 7 3.8325 3.5622 -1.2469 11 6 4.3214 4.9380 -1.3676 12 1 4.2456 5.4617 -0.4146 13 6 5.7729 4.9647 -1.8998 14 6 5.8136 6.1756 -2.8057 15 8 6.8260 6.7145 -3.2000 16 7 4.5643 6.5679 -3.1095 17 6 4.2423 7.7163 -3.9602 18 6 5.1868 7.8794 -5.1649 19 7 5.1619 9.3251 -4.8582 20 6 5.3694 10.4643 -5.5891 21 1 5.2880 11.4318 -5.1161 22 6 5.6844 10.3756 -6.9382 23 7 5.7832 9.1966 -7.5148 24 14 5.9681 11.9296 -7.9351 25 1 7.1008 12.6923 -7.3516 26 1 6.2880 11.5657 -9.3388 27 1 4.7415 12.7663 -7.9073 28 6 4.8214 9.0480 -3.4491 29 6 3.5643 5.6982 -2.4789 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3632 0.5138 -0.8900 33 1 1.8934 -0.5139 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 1.6767 1.9564 0.8900 36 1 1.6768 1.9563 -0.8900 37 1 6.0597 0.9195 0.7627 38 1 5.5973 -0.1946 2.0713 39 1 5.2207 -0.6030 0.3800 40 1 3.3360 3.1583 -1.9758 41 1 6.4788 5.0798 -1.0773 42 1 5.9895 4.0570 -2.4631 43 1 3.1853 7.7688 -4.2211 44 1 6.1636 7.4170 -5.0230 45 1 4.7285 7.6238 -6.1202 46 1 6.0037 9.1346 -8.4573 47 1 4.0718 9.7237 -3.0372 48 1 5.6906 8.9296 -2.8022 49 1 3.1610 4.9963 -3.2088 50 1 2.7622 6.2970 -2.0473 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108560567.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:27:59 Heat of formation + Delta-G solvation = -82.045523 kcal Electronic energy + Delta-G solvation = -29939.681070 eV Core-core repulsion = 25775.046618 eV Total energy + Delta-G solvation = -4164.634452 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.95620 -40.98061 -39.09722 -38.52817 -37.52359 -35.79395 -35.12676 -34.15394 -32.00534 -30.58001 -29.18169 -28.36539 -27.24083 -26.62631 -25.67085 -25.10473 -22.80024 -22.15527 -22.05094 -21.52093 -19.79566 -18.82291 -18.54819 -18.15648 -17.72040 -17.51556 -16.96935 -16.54272 -16.36781 -15.97675 -15.69864 -15.58731 -15.53833 -15.29692 -15.05765 -14.64801 -14.57021 -14.25902 -14.12921 -14.02682 -13.61860 -13.41793 -13.29608 -13.20915 -12.94251 -12.81114 -12.77924 -12.59938 -12.32691 -12.27795 -12.05068 -11.98659 -11.94456 -11.89316 -11.54555 -11.51716 -11.41405 -11.10587 -10.70778 -10.27508 -10.14264 -9.58972 -8.95414 -7.93379 -5.28030 1.42538 1.47602 1.50462 1.53681 1.58233 1.78508 2.10630 2.48092 2.83398 3.24324 3.30484 3.45199 3.46146 3.65594 3.77271 3.86158 3.94768 4.00241 4.02916 4.23983 4.28663 4.36073 4.49666 4.51370 4.55025 4.56580 4.63818 4.74057 4.74966 4.81202 4.82434 4.87184 4.88149 4.90763 5.00996 5.08044 5.19723 5.21138 5.34292 5.37772 5.42355 5.46649 5.55901 5.83098 5.88598 6.04765 6.23053 6.53280 6.87619 7.19619 7.21947 7.56331 8.51830 9.23715 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.024302 B = 0.002034 C = 0.001953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.875251 B =13761.678654 C =14335.393469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.119 4.119 3 C -0.109 4.109 4 C 0.075 3.925 5 H 0.118 0.882 6 O -0.380 6.380 7 C 0.025 3.975 8 C 0.491 3.509 9 O -0.569 6.569 10 N -0.699 5.699 11 C 0.150 3.850 12 H 0.102 0.898 13 C -0.154 4.154 14 C 0.504 3.496 15 O -0.573 6.573 16 N -0.604 5.604 17 C 0.138 3.862 18 C 0.149 3.851 19 N -0.636 5.636 20 C -0.239 4.239 21 H 0.085 0.915 22 C -0.069 4.069 23 N -0.954 5.954 24 Si 0.986 3.014 25 H -0.282 1.282 26 H -0.292 1.292 27 H -0.268 1.268 28 C 0.110 3.890 29 C 0.100 3.900 30 H 0.057 0.943 31 H 0.048 0.952 32 H 0.064 0.936 33 H 0.076 0.924 34 H 0.057 0.943 35 H 0.062 0.938 36 H 0.108 0.892 37 H 0.031 0.969 38 H 0.094 0.906 39 H 0.067 0.933 40 H 0.423 0.577 41 H 0.094 0.906 42 H 0.121 0.879 43 H 0.141 0.859 44 H 0.021 0.979 45 H 0.045 0.955 46 H 0.249 0.751 47 H 0.069 0.931 48 H 0.020 0.980 49 H 0.109 0.891 50 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.710 -24.169 15.426 31.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.156 4.156 3 C -0.147 4.147 4 C 0.014 3.986 5 H 0.135 0.865 6 O -0.297 6.297 7 C -0.071 4.071 8 C 0.278 3.722 9 O -0.447 6.447 10 N -0.355 5.355 11 C 0.043 3.957 12 H 0.120 0.880 13 C -0.195 4.195 14 C 0.292 3.708 15 O -0.452 6.452 16 N -0.338 5.338 17 C 0.034 3.966 18 C 0.023 3.977 19 N -0.362 5.362 20 C -0.367 4.367 21 H 0.103 0.897 22 C -0.262 4.262 23 N -0.602 5.602 24 Si 0.813 3.187 25 H -0.209 1.209 26 H -0.218 1.218 27 H -0.193 1.193 28 C -0.016 4.016 29 C -0.022 4.022 30 H 0.076 0.924 31 H 0.067 0.933 32 H 0.083 0.917 33 H 0.095 0.905 34 H 0.076 0.924 35 H 0.081 0.919 36 H 0.127 0.873 37 H 0.050 0.950 38 H 0.113 0.887 39 H 0.086 0.914 40 H 0.262 0.738 41 H 0.112 0.888 42 H 0.139 0.861 43 H 0.159 0.841 44 H 0.039 0.961 45 H 0.063 0.937 46 H 0.058 0.942 47 H 0.087 0.913 48 H 0.038 0.962 49 H 0.127 0.873 50 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -12.830 -23.298 15.751 30.911 hybrid contribution 1.103 0.898 -1.129 1.816 sum -11.728 -22.400 14.621 29.207 Atomic orbital electron populations 1.21773 0.95237 1.02020 1.02086 1.21457 0.96211 0.95258 1.02693 1.21748 0.89300 0.99371 1.04242 1.22337 0.97224 0.89173 0.89890 0.86476 1.87978 1.37492 1.72434 1.31839 1.22985 0.84352 0.95889 1.03912 1.22012 0.78870 0.89761 0.81527 1.90736 1.41529 1.71800 1.40584 1.45785 1.57581 1.13012 1.19086 1.21534 0.90904 0.83764 0.99496 0.87988 1.22738 1.00253 0.97060 0.99485 1.21448 0.83041 0.85486 0.80822 1.90760 1.36184 1.61162 1.57130 1.48450 1.07105 1.29409 1.48808 1.23397 1.00552 0.82866 0.89785 1.22588 0.95986 0.83754 0.95385 1.46152 1.82120 1.02244 1.05721 1.19398 1.40676 0.85352 0.91287 0.89748 1.25742 1.02250 1.00315 0.97916 1.70028 1.55414 1.23779 1.10981 0.85058 0.78375 0.78266 0.77040 1.20868 1.21800 1.19306 1.23019 0.96582 0.94892 0.87113 1.22546 0.91101 0.93920 0.94609 0.92438 0.93298 0.91733 0.90508 0.92444 0.91932 0.87344 0.95028 0.88734 0.91446 0.73807 0.88772 0.86146 0.84136 0.96119 0.93713 0.94181 0.91291 0.96193 0.87290 0.86832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 9.91 71.98 0.71 -0.24 16 2 C -0.12 -0.77 5.83 30.60 0.18 -0.59 16 3 C -0.11 -0.79 4.89 30.60 0.15 -0.64 16 4 C 0.08 0.82 2.51 29.85 0.08 0.89 16 5 H 0.12 0.59 7.79 -2.39 -0.02 0.57 16 6 O -0.38 -6.35 9.42 -129.99 -1.22 -7.58 16 7 C 0.02 0.31 10.81 113.37 1.23 1.53 16 8 C 0.49 7.96 7.13 87.66 0.63 8.59 16 9 O -0.57 -15.31 16.25 15.95 0.26 -15.05 16 10 N -0.70 -7.24 5.08 -437.54 -2.22 -9.47 16 11 C 0.15 2.38 3.43 46.05 0.16 2.54 16 12 H 0.10 1.92 7.72 -2.39 -0.02 1.90 16 13 C -0.15 -3.52 6.59 30.58 0.20 -3.32 16 14 C 0.50 17.12 7.42 87.90 0.65 17.77 16 15 O -0.57 -27.09 14.61 -3.01 -0.04 -27.13 16 16 N -0.60 -17.23 3.15 -799.72 -2.52 -19.76 16 17 C 0.14 5.03 4.81 46.75 0.22 5.26 16 18 C 0.15 7.65 6.90 86.44 0.60 8.25 16 19 N -0.64 -35.10 3.70 -716.66 -2.65 -37.76 16 20 C -0.24 -14.18 10.70 84.03 0.90 -13.28 16 21 H 0.08 4.75 7.83 -2.91 -0.02 4.73 16 22 C -0.07 -4.14 5.50 84.86 0.47 -3.67 16 23 N -0.95 -60.17 11.39 21.65 0.25 -59.92 16 24 Si 0.99 47.38 29.55 68.60 2.03 49.41 16 25 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 26 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 27 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 28 C 0.11 4.80 8.44 86.49 0.73 5.53 16 29 C 0.10 1.48 7.07 86.83 0.61 2.09 16 30 H 0.06 0.34 8.14 -2.39 -0.02 0.32 16 31 H 0.05 0.37 8.14 -2.39 -0.02 0.35 16 32 H 0.06 0.29 8.14 -2.39 -0.02 0.27 16 33 H 0.08 0.29 8.14 -2.39 -0.02 0.27 16 34 H 0.06 0.55 7.82 -2.39 -0.02 0.53 16 35 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 36 H 0.11 0.21 7.77 -2.39 -0.02 0.19 16 37 H 0.03 0.48 8.14 -2.39 -0.02 0.46 16 38 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.07 0.48 8.09 -2.39 -0.02 0.47 16 40 H 0.42 1.15 8.07 -92.70 -0.75 0.40 16 41 H 0.09 2.38 8.14 -2.38 -0.02 2.36 16 42 H 0.12 2.33 8.08 -2.39 -0.02 2.31 16 43 H 0.14 4.25 8.14 -2.39 -0.02 4.23 16 44 H 0.02 1.22 5.72 -2.39 -0.01 1.21 16 45 H 0.04 2.49 7.16 -2.39 -0.02 2.47 16 46 H 0.25 15.19 8.31 -92.71 -0.77 14.42 16 47 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 48 H 0.02 0.97 7.25 -2.39 -0.02 0.95 16 49 H 0.11 0.96 7.77 -2.39 -0.02 0.94 16 50 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 Total: -1.00 -90.49 405.37 1.56 -88.94 By element: Atomic # 1 Polarization: 7.42 SS G_CDS: 0.19 Total: 7.60 kcal Atomic # 6 Polarization: 23.21 SS G_CDS: 7.51 Total: 30.72 kcal Atomic # 7 Polarization: -119.75 SS G_CDS: -7.15 Total: -126.90 kcal Atomic # 8 Polarization: -48.75 SS G_CDS: -1.01 Total: -49.76 kcal Atomic # 14 Polarization: 47.38 SS G_CDS: 2.03 Total: 49.41 kcal Total: -90.49 1.56 -88.94 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108560567.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.890 kcal (2) G-P(sol) polarization free energy of solvation -90.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds