Wall clock time and date at job start Tue Mar 31 2020 22:28:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.46945 * 2 1 4 4 C 1.53006 * 109.46786 * 175.06826 * 3 2 1 5 5 H 1.09004 * 109.46752 * 305.26877 * 4 3 2 6 6 O 1.42898 * 109.47000 * 65.27264 * 4 3 2 7 7 C 1.42905 * 113.99868 * 209.39759 * 6 4 3 8 8 C 1.50695 * 109.46810 * 185.27473 * 4 3 2 9 9 O 1.21283 * 119.99733 * 244.99446 * 8 4 3 10 10 N 1.34778 * 120.00417 * 65.00344 * 8 4 3 11 11 C 1.46501 * 120.00077 * 180.02562 * 10 8 4 12 12 H 1.09003 * 110.85638 * 37.32731 * 11 10 8 13 13 C 1.54629 * 110.96709 * 273.54055 * 11 10 8 14 14 C 1.51284 * 104.19557 * 217.08231 * 13 11 10 15 15 O 1.21271 * 124.94315 * 196.22666 * 14 13 11 16 16 N 1.34419 * 110.11242 * 16.25602 * 14 13 11 17 17 C 1.46503 * 124.34689 * 180.14392 * 16 14 13 18 18 C 1.53945 * 113.74569 * 38.76020 * 17 16 14 19 19 N 1.47808 * 86.03951 * 222.08948 * 18 17 16 20 20 C 1.36940 * 134.45635 * 204.65052 * 19 18 17 21 21 H 1.07995 * 119.99626 * 179.86185 * 20 19 18 22 22 C 1.38808 * 119.99778 * 359.85497 * 20 19 18 23 23 N 1.31614 * 120.00129 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 119.99683 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47400 * 60.00091 * 24 22 20 26 26 H 1.48507 * 109.47116 * 180.02562 * 24 22 20 27 27 H 1.48506 * 109.47257 * 299.99939 * 24 22 20 28 28 C 1.47587 * 91.05114 * 24.54699 * 19 18 17 29 29 C 1.46764 * 111.30419 * 0.40242 * 16 14 13 30 30 H 1.08999 * 109.46593 * 300.00179 * 1 2 3 31 31 H 1.09000 * 109.47416 * 59.99516 * 1 2 3 32 32 H 1.08995 * 109.47407 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.46597 * 240.00348 * 2 1 3 34 34 H 1.08996 * 109.46958 * 120.00291 * 2 1 3 35 35 H 1.08997 * 109.46948 * 55.06992 * 3 2 1 36 36 H 1.09003 * 109.47163 * 295.06576 * 3 2 1 37 37 H 1.09005 * 109.46795 * 64.84599 * 7 6 4 38 38 H 1.08997 * 109.47123 * 184.84926 * 7 6 4 39 39 H 1.09001 * 109.46690 * 304.84985 * 7 6 4 40 40 H 0.96996 * 119.99461 * 359.97438 * 10 8 4 41 41 H 1.09001 * 110.48511 * 98.40682 * 13 11 10 42 42 H 1.09001 * 110.48653 * 335.76420 * 13 11 10 43 43 H 1.09001 * 112.94683 * 170.35787 * 17 16 14 44 44 H 1.09004 * 113.76578 * 336.34961 * 18 17 16 45 45 H 1.08994 * 113.76811 * 107.74701 * 18 17 16 46 46 H 0.97008 * 119.99936 * 180.02562 * 23 22 20 47 47 H 1.09006 * 113.76743 * 221.15397 * 28 19 18 48 48 H 1.08997 * 113.76784 * 89.75526 * 28 19 18 49 49 H 1.09006 * 110.24395 * 101.98516 * 29 16 14 50 50 H 1.09002 * 110.24962 * 223.98424 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5650 1.4443 0.1240 5 1 3.8584 0.8755 1.0064 6 8 4.1383 0.8464 -1.0404 7 6 5.3901 0.1987 -0.8049 8 6 4.0567 2.8628 0.2543 9 8 4.7497 3.3467 -0.6155 10 7 3.7266 3.5937 1.3375 11 6 4.2042 4.9729 1.4639 12 1 4.2060 5.4732 0.4954 13 6 5.6079 5.0153 2.1111 14 6 5.5751 6.2479 2.9877 15 8 6.5522 6.7974 3.4503 16 7 4.3053 6.6450 3.1796 17 6 3.9152 7.8096 3.9783 18 6 4.8582 9.0157 3.8171 19 7 4.7335 9.1784 5.2809 20 6 4.8711 10.2328 6.1439 21 1 4.7204 10.0866 7.2033 22 6 5.2043 11.4892 5.6570 23 7 5.3876 11.6673 4.3659 24 14 5.3926 12.9272 6.8342 25 1 6.4660 12.6265 7.8154 26 1 5.7486 14.1496 6.0696 27 1 4.1125 13.1491 7.5535 28 6 4.3988 7.7497 5.4386 29 6 3.3596 5.7584 2.4914 30 1 -0.3632 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5138 -0.8901 34 1 1.8933 -0.5139 0.8899 35 1 1.6063 1.9812 0.8425 36 1 1.7506 1.9302 -0.9309 37 1 5.2406 -0.6483 -0.1352 38 1 5.8004 -0.1541 -1.7510 39 1 6.0842 0.9046 -0.3485 40 1 3.1722 3.2067 2.0330 41 1 6.3781 5.1118 1.3459 42 1 5.7772 4.1230 2.7138 43 1 2.8596 8.0610 3.8755 44 1 5.8624 8.7475 3.4890 45 1 4.4272 9.8368 3.2444 46 1 5.6208 12.5453 4.0257 47 1 3.6017 7.5620 6.1580 48 1 5.2678 7.1088 5.5877 49 1 2.8985 5.0735 3.2030 50 1 2.5952 6.3450 1.9818 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108560568.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:03 Heat of formation + Delta-G solvation = -82.193767 kcal Electronic energy + Delta-G solvation = -29942.116935 eV Core-core repulsion = 25777.476055 eV Total energy + Delta-G solvation = -4164.640880 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.95719 -40.98343 -39.09610 -38.52482 -37.52524 -35.80161 -35.12876 -34.15507 -32.00253 -30.57651 -29.18300 -28.36713 -27.23543 -26.62592 -25.67309 -25.10623 -22.79083 -22.16832 -22.04798 -21.51750 -19.80544 -18.80745 -18.55762 -18.18327 -17.72671 -17.43325 -16.99547 -16.62774 -16.30870 -15.93884 -15.77281 -15.59484 -15.50849 -15.33177 -14.95626 -14.69037 -14.56487 -14.24519 -14.13447 -14.03888 -13.58100 -13.41852 -13.31467 -13.23910 -12.92173 -12.79741 -12.79208 -12.60493 -12.31639 -12.29315 -12.02269 -11.98795 -11.95339 -11.91138 -11.55066 -11.50764 -11.41659 -11.09677 -10.71112 -10.27397 -10.13988 -9.59404 -8.95534 -7.93091 -5.28119 1.42297 1.47617 1.50095 1.53701 1.58382 1.78391 2.10899 2.48151 2.83379 3.24809 3.29911 3.44890 3.46238 3.65134 3.78812 3.85697 3.94710 3.99769 4.02730 4.24667 4.28657 4.36255 4.49335 4.50083 4.56110 4.58425 4.63382 4.73576 4.74755 4.81583 4.83872 4.87267 4.88089 4.92223 5.00667 5.08375 5.19573 5.21260 5.34713 5.37584 5.42636 5.46441 5.56251 5.83104 5.88157 6.05012 6.22980 6.53887 6.86901 7.19726 7.22523 7.56776 8.52035 9.23976 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.025430 B = 0.002031 C = 0.001944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.776228 B =13780.085378 C =14399.577870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.118 4.118 3 C -0.109 4.109 4 C 0.076 3.924 5 H 0.119 0.881 6 O -0.381 6.381 7 C 0.025 3.975 8 C 0.490 3.510 9 O -0.570 6.570 10 N -0.697 5.697 11 C 0.148 3.852 12 H 0.097 0.903 13 C -0.153 4.153 14 C 0.504 3.496 15 O -0.573 6.573 16 N -0.604 5.604 17 C 0.137 3.863 18 C 0.146 3.854 19 N -0.636 5.636 20 C -0.237 4.237 21 H 0.088 0.912 22 C -0.072 4.072 23 N -0.955 5.955 24 Si 0.986 3.014 25 H -0.281 1.281 26 H -0.294 1.294 27 H -0.267 1.267 28 C 0.115 3.885 29 C 0.101 3.899 30 H 0.065 0.935 31 H 0.048 0.952 32 H 0.057 0.943 33 H 0.055 0.945 34 H 0.077 0.923 35 H 0.109 0.891 36 H 0.061 0.939 37 H 0.068 0.932 38 H 0.092 0.908 39 H 0.032 0.968 40 H 0.424 0.576 41 H 0.091 0.909 42 H 0.125 0.875 43 H 0.140 0.860 44 H 0.019 0.981 45 H 0.041 0.959 46 H 0.248 0.752 47 H 0.072 0.928 48 H 0.024 0.976 49 H 0.116 0.884 50 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.943 -29.908 -8.221 33.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.155 4.155 3 C -0.147 4.147 4 C 0.015 3.985 5 H 0.137 0.863 6 O -0.298 6.298 7 C -0.071 4.071 8 C 0.277 3.723 9 O -0.448 6.448 10 N -0.353 5.353 11 C 0.041 3.959 12 H 0.115 0.885 13 C -0.194 4.194 14 C 0.292 3.708 15 O -0.452 6.452 16 N -0.338 5.338 17 C 0.033 3.967 18 C 0.019 3.981 19 N -0.363 5.363 20 C -0.365 4.365 21 H 0.105 0.895 22 C -0.265 4.265 23 N -0.604 5.604 24 Si 0.813 3.187 25 H -0.207 1.207 26 H -0.221 1.221 27 H -0.192 1.192 28 C -0.011 4.011 29 C -0.021 4.021 30 H 0.084 0.916 31 H 0.067 0.933 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.095 0.905 35 H 0.127 0.873 36 H 0.079 0.921 37 H 0.086 0.914 38 H 0.110 0.890 39 H 0.051 0.949 40 H 0.263 0.737 41 H 0.109 0.891 42 H 0.143 0.857 43 H 0.157 0.843 44 H 0.037 0.963 45 H 0.059 0.941 46 H 0.057 0.943 47 H 0.090 0.910 48 H 0.041 0.959 49 H 0.134 0.866 50 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -12.028 -28.923 -8.666 32.501 hybrid contribution 1.034 1.209 0.780 1.772 sum -10.994 -27.714 -7.885 30.840 Atomic orbital electron populations 1.21780 0.95177 1.02038 1.02136 1.21450 0.96197 0.95198 1.02683 1.21751 0.89289 0.99433 1.04205 1.22348 0.96125 0.88703 0.91357 0.86312 1.87982 1.36904 1.72043 1.32907 1.22975 0.84624 0.96157 1.03335 1.22056 0.79513 0.89779 0.80950 1.90744 1.39108 1.73114 1.41801 1.45754 1.53925 1.12242 1.23387 1.21524 0.91339 0.83608 0.99425 0.88502 1.22735 1.00449 0.96801 0.99441 1.21448 0.82826 0.85833 0.80688 1.90760 1.39411 1.61028 1.54020 1.48452 1.07172 1.27859 1.50297 1.23400 1.00129 0.83478 0.89663 1.22591 0.96133 0.93446 0.85889 1.46153 1.81593 1.04232 1.04283 1.19411 1.40338 0.86938 0.89856 0.89473 1.25770 1.02190 1.00536 0.97961 1.70046 1.54719 1.22479 1.13148 0.85048 0.78442 0.77782 0.77409 1.20694 1.22052 1.19211 1.23001 0.97029 0.85066 0.96041 1.22542 0.91628 0.93312 0.94597 0.91607 0.93330 0.92437 0.92575 0.90474 0.87258 0.92061 0.91367 0.88991 0.94880 0.73704 0.89071 0.85709 0.84270 0.96312 0.94073 0.94277 0.90953 0.95868 0.86636 0.87338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 9.91 71.98 0.71 -0.17 16 2 C -0.12 -0.73 5.78 30.60 0.18 -0.55 16 3 C -0.11 -0.78 4.89 30.60 0.15 -0.63 16 4 C 0.08 0.81 2.51 29.85 0.07 0.89 16 5 H 0.12 0.53 7.83 -2.38 -0.02 0.51 16 6 O -0.38 -6.39 9.52 -129.99 -1.24 -7.62 16 7 C 0.03 0.31 10.79 113.37 1.22 1.54 16 8 C 0.49 7.98 7.10 87.66 0.62 8.60 16 9 O -0.57 -15.67 16.25 15.95 0.26 -15.41 16 10 N -0.70 -7.07 5.08 -437.53 -2.22 -9.30 16 11 C 0.15 2.42 3.43 46.05 0.16 2.57 16 12 H 0.10 1.98 7.73 -2.39 -0.02 1.96 16 13 C -0.15 -3.49 6.59 30.59 0.20 -3.29 16 14 C 0.50 17.10 7.42 87.90 0.65 17.75 16 15 O -0.57 -27.05 14.61 -3.00 -0.04 -27.10 16 16 N -0.60 -17.22 3.16 -799.69 -2.52 -19.74 16 17 C 0.14 5.00 4.81 46.75 0.22 5.23 16 18 C 0.15 7.60 6.90 86.44 0.60 8.20 16 19 N -0.64 -34.98 3.70 -716.65 -2.65 -37.63 16 20 C -0.24 -14.02 10.70 84.03 0.90 -13.12 16 21 H 0.09 4.84 7.83 -2.91 -0.02 4.82 16 22 C -0.07 -4.31 5.50 84.86 0.47 -3.84 16 23 N -0.96 -61.14 11.39 21.65 0.25 -60.90 16 24 Si 0.99 47.56 29.55 68.60 2.03 49.58 16 25 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 26 H -0.29 -14.27 7.11 99.48 0.71 -13.56 16 27 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 28 C 0.11 4.86 8.43 86.49 0.73 5.58 16 29 C 0.10 1.49 7.07 86.83 0.61 2.11 16 30 H 0.06 0.25 8.14 -2.39 -0.02 0.23 16 31 H 0.05 0.35 8.14 -2.39 -0.02 0.33 16 32 H 0.06 0.31 8.14 -2.39 -0.02 0.29 16 33 H 0.06 0.53 7.96 -2.39 -0.02 0.51 16 34 H 0.08 0.26 8.14 -2.39 -0.02 0.24 16 35 H 0.11 0.17 7.76 -2.39 -0.02 0.15 16 36 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 37 H 0.07 0.48 8.14 -2.38 -0.02 0.46 16 38 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 39 H 0.03 0.49 8.11 -2.39 -0.02 0.47 16 40 H 0.42 0.80 8.07 -92.71 -0.75 0.05 16 41 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 42 H 0.12 2.28 8.08 -2.39 -0.02 2.26 16 43 H 0.14 4.24 8.14 -2.39 -0.02 4.22 16 44 H 0.02 1.13 5.74 -2.38 -0.01 1.12 16 45 H 0.04 2.35 7.16 -2.39 -0.02 2.33 16 46 H 0.25 15.41 8.31 -92.70 -0.77 14.63 16 47 H 0.07 2.64 8.14 -2.38 -0.02 2.62 16 48 H 0.02 1.08 7.23 -2.39 -0.02 1.06 16 49 H 0.12 0.85 7.77 -2.38 -0.02 0.83 16 50 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 Total: -1.00 -91.73 405.54 1.54 -90.19 By element: Atomic # 1 Polarization: 6.87 SS G_CDS: 0.19 Total: 7.06 kcal Atomic # 6 Polarization: 23.37 SS G_CDS: 7.50 Total: 30.87 kcal Atomic # 7 Polarization: -120.42 SS G_CDS: -7.15 Total: -127.57 kcal Atomic # 8 Polarization: -49.11 SS G_CDS: -1.02 Total: -50.13 kcal Atomic # 14 Polarization: 47.56 SS G_CDS: 2.03 Total: 49.58 kcal Total: -91.73 1.54 -90.19 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108560568.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.997 kcal (2) G-P(sol) polarization free energy of solvation -91.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds