Wall clock time and date at job start Tue Mar 31 2020 22:28:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53005 * 109.47353 * 2 1 4 4 C 1.53000 * 109.46944 * 176.33100 * 3 2 1 5 5 H 1.08995 * 109.47360 * 305.28425 * 4 3 2 6 6 O 1.42900 * 109.46704 * 65.28763 * 4 3 2 7 7 C 1.42905 * 113.99867 * 209.42673 * 6 4 3 8 8 C 1.50701 * 109.46779 * 185.28109 * 4 3 2 9 9 O 1.21283 * 120.00314 * 245.00289 * 8 4 3 10 10 N 1.34779 * 119.99561 * 65.00750 * 8 4 3 11 11 C 1.46506 * 119.99894 * 179.97438 * 10 8 4 12 12 H 1.08998 * 110.85305 * 322.65997 * 11 10 8 13 13 C 1.54633 * 110.96886 * 86.44833 * 11 10 8 14 14 C 1.51281 * 104.19159 * 142.91694 * 13 11 10 15 15 O 1.21277 * 124.93922 * 163.70682 * 14 13 11 16 16 N 1.34423 * 110.11929 * 343.75211 * 14 13 11 17 17 C 1.46499 * 124.34989 * 179.57519 * 16 14 13 18 18 C 1.53941 * 113.74595 * 38.70892 * 17 16 14 19 19 N 1.47808 * 86.03600 * 222.08666 * 18 17 16 20 20 C 1.36944 * 134.45317 * 204.64296 * 19 18 17 21 21 H 1.07998 * 119.99702 * 179.86898 * 20 19 18 22 22 C 1.38804 * 120.00268 * 359.86626 * 20 19 18 23 23 N 1.31628 * 119.99950 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 120.00121 * 179.97438 * 22 20 19 25 25 H 1.48492 * 109.47260 * 0.02562 * 24 22 20 26 26 H 1.48499 * 109.46922 * 120.00188 * 24 22 20 27 27 H 1.48502 * 109.47146 * 239.99988 * 24 22 20 28 28 C 1.47579 * 91.05494 * 24.54831 * 19 18 17 29 29 C 1.46764 * 111.29606 * 359.58575 * 16 14 13 30 30 H 1.08998 * 109.46721 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.46409 * 59.99873 * 1 2 3 32 32 H 1.08997 * 109.47105 * 300.00320 * 1 2 3 33 33 H 1.09001 * 109.47186 * 119.99708 * 2 1 3 34 34 H 1.08997 * 109.47105 * 239.99680 * 2 1 3 35 35 H 1.09000 * 109.46906 * 296.33544 * 3 2 1 36 36 H 1.09003 * 109.46757 * 56.33101 * 3 2 1 37 37 H 1.09005 * 109.46586 * 61.54860 * 7 6 4 38 38 H 1.08998 * 109.47267 * 181.54876 * 7 6 4 39 39 H 1.09005 * 109.47083 * 301.55617 * 7 6 4 40 40 H 0.96996 * 120.00601 * 359.97438 * 10 8 4 41 41 H 1.09000 * 110.48376 * 261.59066 * 13 11 10 42 42 H 1.09000 * 110.48631 * 24.11010 * 13 11 10 43 43 H 1.08998 * 112.94303 * 170.30421 * 17 16 14 44 44 H 1.09009 * 113.76676 * 336.35006 * 18 17 16 45 45 H 1.08996 * 113.76888 * 107.74620 * 18 17 16 46 46 H 0.96994 * 120.00256 * 180.02562 * 23 22 20 47 47 H 1.08993 * 113.76965 * 221.15407 * 28 19 18 48 48 H 1.09006 * 113.76707 * 89.75029 * 28 19 18 49 49 H 1.09000 * 110.24951 * 258.01840 * 29 16 14 50 50 H 1.09007 * 110.24102 * 136.02392 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5673 1.4434 0.0923 5 1 3.8790 0.8681 0.9640 6 8 4.1161 0.8544 -1.0884 7 6 5.3722 0.2044 -0.8837 8 6 4.0618 2.8610 0.2229 9 8 4.7364 3.3515 -0.6575 10 7 3.7543 3.5836 1.3183 11 6 4.2354 4.9615 1.4456 12 1 5.2418 5.0603 1.0387 13 6 3.2632 5.9523 0.7642 14 6 3.2782 7.1665 1.6666 15 8 2.8756 8.2675 1.3562 16 7 3.8036 6.8476 2.8621 17 6 3.9744 7.7925 3.9685 18 6 2.8103 8.7886 4.1183 19 7 3.8509 9.8110 4.3563 20 6 3.8809 11.0155 5.0071 21 1 4.7956 11.5887 5.0404 22 6 2.7356 11.4998 5.6240 23 7 1.6208 10.8010 5.5838 24 14 2.7767 13.1425 6.5124 25 1 4.1390 13.7249 6.4133 26 1 1.7968 14.0674 5.8882 27 1 2.4266 12.9413 7.9414 28 6 4.8446 9.0119 3.6134 29 6 4.1843 5.4312 2.9163 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3632 0.5139 -0.8900 32 1 -0.3633 0.5139 0.8899 33 1 1.8934 -0.5138 0.8900 34 1 1.8934 -0.5139 -0.8899 35 1 1.7314 1.9370 -0.9210 36 1 1.6241 1.9750 0.8553 37 1 5.2472 -0.6118 -0.1721 38 1 5.7347 -0.1925 -1.8319 39 1 6.0928 0.9218 -0.4908 40 1 3.2145 3.1915 2.0223 41 1 3.6205 6.2130 -0.2320 42 1 2.2611 5.5271 0.7101 43 1 4.2594 7.3070 4.9018 44 1 2.2439 8.9437 3.2000 45 1 2.1760 8.5960 4.9835 46 1 0.8204 11.1396 6.0145 47 1 5.8313 8.9972 4.0762 48 1 4.8769 9.2327 2.5464 49 1 3.4377 4.8608 3.4688 50 1 5.1640 5.3216 3.3816 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108560569.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:08 Heat of formation + Delta-G solvation = -53.836619 kcal Electronic energy + Delta-G solvation = -29988.541044 eV Core-core repulsion = 25825.129822 eV Total energy + Delta-G solvation = -4163.411222 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.89168 -40.02449 -38.02823 -37.17248 -36.34106 -35.29786 -34.09410 -32.22077 -30.94787 -29.78806 -27.59727 -27.14256 -26.71862 -25.01347 -24.72667 -23.39486 -21.94474 -21.67268 -20.89368 -20.35315 -18.33040 -17.92644 -17.53573 -16.83513 -16.54811 -16.27107 -16.05416 -15.32215 -15.17371 -15.13839 -14.76793 -14.62104 -14.28962 -13.92115 -13.81476 -13.66944 -13.53684 -13.50335 -13.24692 -12.84938 -12.48858 -12.43357 -12.08392 -11.87538 -11.82651 -11.61175 -11.56725 -11.48063 -11.40423 -11.16979 -11.06268 -10.91805 -10.85348 -10.70265 -10.20873 -9.97124 -9.77051 -9.57155 -9.49436 -9.17266 -8.66861 -8.19833 -6.81500 -5.72443 -3.04308 2.21433 2.55190 2.92001 3.25645 3.34704 3.42139 3.47689 3.49818 4.08424 4.27208 4.35939 4.38077 4.50776 4.51405 4.63556 4.73912 4.79676 4.87349 4.92770 5.00766 5.13223 5.18163 5.23240 5.33115 5.33299 5.34911 5.36402 5.44105 5.53702 5.63963 5.65157 5.68362 5.70120 5.77008 5.84757 5.89648 6.08884 6.28978 6.51912 6.55550 6.58405 6.87024 7.09259 7.28865 7.47891 7.58415 7.62637 7.84925 8.01206 8.54547 9.08583 9.74626 10.63568 11.44970 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.023444 B = 0.002074 C = 0.001982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.026501 B =13499.540965 C =14125.856645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.120 4.120 3 C -0.114 4.114 4 C 0.076 3.924 5 H 0.088 0.912 6 O -0.355 6.355 7 C 0.029 3.971 8 C 0.491 3.509 9 O -0.518 6.518 10 N -0.719 5.719 11 C 0.135 3.865 12 H 0.110 0.890 13 C -0.166 4.166 14 C 0.515 3.485 15 O -0.506 6.506 16 N -0.606 5.606 17 C 0.098 3.902 18 C 0.153 3.847 19 N -0.605 5.605 20 C -0.219 4.219 21 H 0.081 0.919 22 C -0.009 4.009 23 N -0.920 5.920 24 Si 0.913 3.087 25 H -0.279 1.279 26 H -0.290 1.290 27 H -0.290 1.290 28 C 0.111 3.889 29 C 0.100 3.900 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.061 0.939 34 H 0.071 0.929 35 H 0.080 0.920 36 H 0.083 0.917 37 H 0.042 0.958 38 H 0.090 0.910 39 H 0.045 0.955 40 H 0.403 0.597 41 H 0.103 0.897 42 H 0.104 0.896 43 H 0.106 0.894 44 H 0.056 0.944 45 H 0.070 0.930 46 H 0.253 0.747 47 H 0.043 0.957 48 H 0.041 0.959 49 H 0.073 0.927 50 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.163 -28.498 -8.392 29.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.158 4.158 3 C -0.152 4.152 4 C 0.014 3.986 5 H 0.105 0.895 6 O -0.272 6.272 7 C -0.068 4.068 8 C 0.276 3.724 9 O -0.392 6.392 10 N -0.374 5.374 11 C 0.029 3.971 12 H 0.127 0.873 13 C -0.208 4.208 14 C 0.301 3.699 15 O -0.381 6.381 16 N -0.342 5.342 17 C -0.004 4.004 18 C 0.027 3.973 19 N -0.332 5.332 20 C -0.346 4.346 21 H 0.099 0.901 22 C -0.206 4.206 23 N -0.567 5.567 24 Si 0.744 3.256 25 H -0.205 1.205 26 H -0.217 1.217 27 H -0.217 1.217 28 C -0.016 4.016 29 C -0.025 4.025 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.080 0.920 34 H 0.089 0.911 35 H 0.099 0.901 36 H 0.101 0.899 37 H 0.061 0.939 38 H 0.108 0.892 39 H 0.064 0.936 40 H 0.238 0.762 41 H 0.121 0.879 42 H 0.122 0.878 43 H 0.124 0.876 44 H 0.074 0.926 45 H 0.089 0.911 46 H 0.063 0.937 47 H 0.061 0.939 48 H 0.058 0.942 49 H 0.091 0.909 50 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 3.245 -27.214 -9.144 28.892 hybrid contribution -0.087 0.695 1.046 1.259 sum 3.158 -26.519 -8.098 27.907 Atomic orbital electron populations 1.21779 0.95409 1.01851 1.02121 1.21480 0.96101 0.95616 1.02605 1.21724 0.90487 0.98903 1.04095 1.22123 0.95660 0.90459 0.90385 0.89455 1.88015 1.36221 1.71986 1.30963 1.22875 0.85426 0.95848 1.02639 1.21476 0.80346 0.88788 0.81769 1.90748 1.37421 1.71788 1.39207 1.46016 1.55434 1.13704 1.22257 1.21802 0.99173 0.80593 0.95500 0.87255 1.22822 1.01915 0.95239 1.00831 1.20602 0.77400 0.89270 0.82598 1.90793 1.46654 1.24103 1.76508 1.48502 1.61995 1.09083 1.14584 1.24084 1.01846 0.87147 0.87341 1.22785 0.91153 0.83061 1.00267 1.45725 1.07393 1.20622 1.59438 1.19040 0.96378 0.94102 1.25117 0.90122 1.24806 0.95489 0.98964 1.01311 1.69840 1.00526 1.38140 1.48176 0.86020 0.77357 0.83230 0.79003 1.20450 1.21730 1.21727 1.22928 0.93641 0.88936 0.96091 1.22184 1.01690 0.83372 0.95265 0.92592 0.92515 0.92563 0.92020 0.91055 0.90109 0.89903 0.93908 0.89171 0.93616 0.76215 0.87853 0.87809 0.87638 0.92598 0.91150 0.93719 0.93923 0.94188 0.90876 0.89682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.74 9.91 37.16 0.37 -0.37 16 2 C -0.12 -0.59 5.79 -26.73 -0.15 -0.74 16 3 C -0.11 -0.64 4.89 -26.73 -0.13 -0.77 16 4 C 0.08 0.51 2.51 -27.88 -0.07 0.44 16 5 H 0.09 0.37 7.81 -51.93 -0.41 -0.04 16 6 O -0.36 -3.19 9.50 -55.09 -0.52 -3.71 16 7 C 0.03 0.19 10.79 101.05 1.09 1.28 16 8 C 0.49 4.54 7.12 -10.98 -0.08 4.46 16 9 O -0.52 -7.16 16.25 -14.30 -0.23 -7.39 16 10 N -0.72 -5.05 5.08 -52.22 -0.27 -5.31 16 11 C 0.13 1.27 3.43 -66.30 -0.23 1.04 16 12 H 0.11 1.14 7.73 -51.93 -0.40 0.74 16 13 C -0.17 -2.03 6.59 -26.74 -0.18 -2.20 16 14 C 0.52 8.78 7.42 -10.86 -0.08 8.69 16 15 O -0.51 -11.40 14.61 5.56 0.08 -11.32 16 16 N -0.61 -9.21 3.16 -166.65 -0.53 -9.74 16 17 C 0.10 1.86 4.81 -70.16 -0.34 1.52 16 18 C 0.15 3.82 6.90 -2.84 -0.02 3.80 16 19 N -0.61 -16.41 3.70 -177.91 -0.66 -17.07 16 20 C -0.22 -6.39 10.70 -15.06 -0.16 -6.56 16 21 H 0.08 2.27 7.83 -52.49 -0.41 1.86 16 22 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16 23 N -0.92 -28.20 11.39 55.49 0.63 -27.57 16 24 Si 0.91 22.77 29.55 -169.99 -5.02 17.75 16 25 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 26 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 27 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 28 C 0.11 2.44 8.44 -2.97 -0.03 2.41 16 29 C 0.10 0.95 7.07 -3.13 -0.02 0.93 16 30 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 32 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 33 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 34 H 0.07 0.42 7.93 -51.93 -0.41 0.00 16 35 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.08 0.33 7.76 -51.93 -0.40 -0.07 16 37 H 0.04 0.19 8.11 -51.93 -0.42 -0.24 16 38 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 40 H 0.40 1.59 8.07 -40.82 -0.33 1.26 16 41 H 0.10 1.33 8.14 -51.93 -0.42 0.91 16 42 H 0.10 1.13 8.08 -51.93 -0.42 0.71 16 43 H 0.11 1.79 8.14 -51.93 -0.42 1.36 16 44 H 0.06 1.54 5.72 -51.92 -0.30 1.25 16 45 H 0.07 1.89 7.16 -51.93 -0.37 1.52 16 46 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 47 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 48 H 0.04 0.94 7.25 -51.93 -0.38 0.56 16 49 H 0.07 0.54 7.77 -51.93 -0.40 0.14 16 50 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 405.52 15.07 6.11 6.11 Total: -1.00 -38.45 405.52 -8.96 -47.42 By element: Atomic # 1 Polarization: 5.70 SS G_CDS: -8.44 Total: -2.73 kcal Atomic # 6 Polarization: 13.69 SS G_CDS: -0.12 Total: 13.57 kcal Atomic # 7 Polarization: -58.88 SS G_CDS: -0.82 Total: -59.69 kcal Atomic # 8 Polarization: -21.74 SS G_CDS: -0.67 Total: -22.42 kcal Atomic # 14 Polarization: 22.77 SS G_CDS: -5.02 Total: 17.75 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -38.45 -8.96 -47.42 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108560569.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.420 kcal (2) G-P(sol) polarization free energy of solvation -38.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds