Wall clock time and date at job start Tue Mar 31 2020 22:28:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53005 * 109.47353 * 2 1 4 4 C 1.53000 * 109.46944 * 176.33100 * 3 2 1 5 5 H 1.08995 * 109.47360 * 305.28425 * 4 3 2 6 6 O 1.42900 * 109.46704 * 65.28763 * 4 3 2 7 7 C 1.42905 * 113.99867 * 209.42673 * 6 4 3 8 8 C 1.50701 * 109.46779 * 185.28109 * 4 3 2 9 9 O 1.21283 * 120.00314 * 245.00289 * 8 4 3 10 10 N 1.34779 * 119.99561 * 65.00750 * 8 4 3 11 11 C 1.46506 * 119.99894 * 179.97438 * 10 8 4 12 12 H 1.08998 * 110.85305 * 322.65997 * 11 10 8 13 13 C 1.54633 * 110.96886 * 86.44833 * 11 10 8 14 14 C 1.51281 * 104.19159 * 142.91694 * 13 11 10 15 15 O 1.21277 * 124.93922 * 163.70682 * 14 13 11 16 16 N 1.34423 * 110.11929 * 343.75211 * 14 13 11 17 17 C 1.46499 * 124.34989 * 179.57519 * 16 14 13 18 18 C 1.53941 * 113.74595 * 38.70892 * 17 16 14 19 19 N 1.47808 * 86.03600 * 222.08666 * 18 17 16 20 20 C 1.36944 * 134.45317 * 204.64296 * 19 18 17 21 21 H 1.07998 * 119.99702 * 179.86898 * 20 19 18 22 22 C 1.38804 * 120.00268 * 359.86626 * 20 19 18 23 23 N 1.31628 * 119.99950 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 120.00121 * 179.97438 * 22 20 19 25 25 H 1.48492 * 109.47260 * 0.02562 * 24 22 20 26 26 H 1.48499 * 109.46922 * 120.00188 * 24 22 20 27 27 H 1.48502 * 109.47146 * 239.99988 * 24 22 20 28 28 C 1.47579 * 91.05494 * 24.54831 * 19 18 17 29 29 C 1.46764 * 111.29606 * 359.58575 * 16 14 13 30 30 H 1.08998 * 109.46721 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.46409 * 59.99873 * 1 2 3 32 32 H 1.08997 * 109.47105 * 300.00320 * 1 2 3 33 33 H 1.09001 * 109.47186 * 119.99708 * 2 1 3 34 34 H 1.08997 * 109.47105 * 239.99680 * 2 1 3 35 35 H 1.09000 * 109.46906 * 296.33544 * 3 2 1 36 36 H 1.09003 * 109.46757 * 56.33101 * 3 2 1 37 37 H 1.09005 * 109.46586 * 61.54860 * 7 6 4 38 38 H 1.08998 * 109.47267 * 181.54876 * 7 6 4 39 39 H 1.09005 * 109.47083 * 301.55617 * 7 6 4 40 40 H 0.96996 * 120.00601 * 359.97438 * 10 8 4 41 41 H 1.09000 * 110.48376 * 261.59066 * 13 11 10 42 42 H 1.09000 * 110.48631 * 24.11010 * 13 11 10 43 43 H 1.08998 * 112.94303 * 170.30421 * 17 16 14 44 44 H 1.09009 * 113.76676 * 336.35006 * 18 17 16 45 45 H 1.08996 * 113.76888 * 107.74620 * 18 17 16 46 46 H 0.96994 * 120.00256 * 180.02562 * 23 22 20 47 47 H 1.08993 * 113.76965 * 221.15407 * 28 19 18 48 48 H 1.09006 * 113.76707 * 89.75029 * 28 19 18 49 49 H 1.09000 * 110.24951 * 258.01840 * 29 16 14 50 50 H 1.09007 * 110.24102 * 136.02392 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5673 1.4434 0.0923 5 1 3.8790 0.8681 0.9640 6 8 4.1161 0.8544 -1.0884 7 6 5.3722 0.2044 -0.8837 8 6 4.0618 2.8610 0.2229 9 8 4.7364 3.3515 -0.6575 10 7 3.7543 3.5836 1.3183 11 6 4.2354 4.9615 1.4456 12 1 5.2418 5.0603 1.0387 13 6 3.2632 5.9523 0.7642 14 6 3.2782 7.1665 1.6666 15 8 2.8756 8.2675 1.3562 16 7 3.8036 6.8476 2.8621 17 6 3.9744 7.7925 3.9685 18 6 2.8103 8.7886 4.1183 19 7 3.8509 9.8110 4.3563 20 6 3.8809 11.0155 5.0071 21 1 4.7956 11.5887 5.0404 22 6 2.7356 11.4998 5.6240 23 7 1.6208 10.8010 5.5838 24 14 2.7767 13.1425 6.5124 25 1 4.1390 13.7249 6.4133 26 1 1.7968 14.0674 5.8882 27 1 2.4266 12.9413 7.9414 28 6 4.8446 9.0119 3.6134 29 6 4.1843 5.4312 2.9163 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3632 0.5139 -0.8900 32 1 -0.3633 0.5139 0.8899 33 1 1.8934 -0.5138 0.8900 34 1 1.8934 -0.5139 -0.8899 35 1 1.7314 1.9370 -0.9210 36 1 1.6241 1.9750 0.8553 37 1 5.2472 -0.6118 -0.1721 38 1 5.7347 -0.1925 -1.8319 39 1 6.0928 0.9218 -0.4908 40 1 3.2145 3.1915 2.0223 41 1 3.6205 6.2130 -0.2320 42 1 2.2611 5.5271 0.7101 43 1 4.2594 7.3070 4.9018 44 1 2.2439 8.9437 3.2000 45 1 2.1760 8.5960 4.9835 46 1 0.8204 11.1396 6.0145 47 1 5.8313 8.9972 4.0762 48 1 4.8769 9.2327 2.5464 49 1 3.4377 4.8608 3.4688 50 1 5.1640 5.3216 3.3816 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108560569.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:06 Heat of formation + Delta-G solvation = -82.228613 kcal Electronic energy + Delta-G solvation = -29989.772213 eV Core-core repulsion = 25825.129822 eV Total energy + Delta-G solvation = -4164.642391 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.95502 -40.98043 -39.09659 -38.52240 -37.52087 -35.80936 -35.12786 -34.15581 -31.99908 -30.59606 -29.18776 -28.35289 -27.22292 -26.62660 -25.69020 -25.10008 -22.80697 -22.14926 -22.09904 -21.49141 -19.78142 -18.82827 -18.57586 -18.18214 -17.72554 -17.42538 -16.96614 -16.67089 -16.27144 -16.00750 -15.66918 -15.64522 -15.49642 -15.26563 -15.04817 -14.64283 -14.58017 -14.26524 -14.14770 -14.02083 -13.62221 -13.43628 -13.29199 -13.24607 -12.93727 -12.85545 -12.78341 -12.59800 -12.29992 -12.27122 -12.05469 -11.98196 -11.92548 -11.88355 -11.53716 -11.51212 -11.43692 -11.12343 -10.71978 -10.26749 -10.14079 -9.58893 -8.95494 -7.93848 -5.28503 1.42559 1.45394 1.50195 1.55587 1.58888 1.77538 2.11665 2.47659 2.83942 3.24236 3.30182 3.45787 3.47445 3.63055 3.77471 3.89965 3.93135 3.99470 4.01246 4.24011 4.26678 4.35475 4.50605 4.51366 4.56064 4.58425 4.63886 4.71995 4.74940 4.80914 4.81778 4.87093 4.89420 4.90882 4.99218 5.06105 5.19833 5.21394 5.31978 5.37849 5.40530 5.46868 5.53956 5.83134 5.88457 6.06368 6.23123 6.53517 6.87624 7.19838 7.22070 7.56024 8.51428 9.23643 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.023444 B = 0.002074 C = 0.001982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.026501 B =13499.540965 C =14125.856645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.116 4.116 3 C -0.112 4.112 4 C 0.078 3.922 5 H 0.123 0.877 6 O -0.382 6.382 7 C 0.025 3.975 8 C 0.491 3.509 9 O -0.569 6.569 10 N -0.699 5.699 11 C 0.150 3.850 12 H 0.103 0.897 13 C -0.155 4.155 14 C 0.504 3.496 15 O -0.573 6.573 16 N -0.604 5.604 17 C 0.138 3.862 18 C 0.149 3.851 19 N -0.636 5.636 20 C -0.236 4.236 21 H 0.085 0.915 22 C -0.070 4.070 23 N -0.954 5.954 24 Si 0.985 3.015 25 H -0.264 1.264 26 H -0.296 1.296 27 H -0.284 1.284 28 C 0.110 3.890 29 C 0.101 3.899 30 H 0.059 0.941 31 H 0.045 0.955 32 H 0.062 0.938 33 H 0.080 0.920 34 H 0.058 0.942 35 H 0.057 0.943 36 H 0.104 0.896 37 H 0.069 0.931 38 H 0.092 0.908 39 H 0.034 0.966 40 H 0.423 0.577 41 H 0.093 0.907 42 H 0.120 0.880 43 H 0.141 0.859 44 H 0.021 0.979 45 H 0.044 0.956 46 H 0.249 0.751 47 H 0.069 0.931 48 H 0.020 0.980 49 H 0.109 0.891 50 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.263 -31.223 -6.663 32.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.153 4.153 3 C -0.150 4.150 4 C 0.016 3.984 5 H 0.141 0.859 6 O -0.300 6.300 7 C -0.071 4.071 8 C 0.278 3.722 9 O -0.446 6.446 10 N -0.355 5.355 11 C 0.043 3.957 12 H 0.121 0.879 13 C -0.196 4.196 14 C 0.292 3.708 15 O -0.452 6.452 16 N -0.338 5.338 17 C 0.034 3.966 18 C 0.023 3.977 19 N -0.363 5.363 20 C -0.364 4.364 21 H 0.103 0.897 22 C -0.263 4.263 23 N -0.603 5.603 24 Si 0.813 3.187 25 H -0.188 1.188 26 H -0.223 1.223 27 H -0.210 1.210 28 C -0.016 4.016 29 C -0.021 4.021 30 H 0.078 0.922 31 H 0.065 0.935 32 H 0.081 0.919 33 H 0.098 0.902 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.123 0.877 37 H 0.087 0.913 38 H 0.111 0.889 39 H 0.053 0.947 40 H 0.262 0.738 41 H 0.111 0.889 42 H 0.138 0.862 43 H 0.159 0.841 44 H 0.039 0.961 45 H 0.063 0.937 46 H 0.058 0.942 47 H 0.088 0.912 48 H 0.038 0.962 49 H 0.127 0.873 50 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 4.373 -30.034 -7.390 31.237 hybrid contribution -0.426 1.494 0.418 1.608 sum 3.947 -28.540 -6.972 29.643 Atomic orbital electron populations 1.21790 0.95486 1.02068 1.01939 1.21440 0.95955 0.95073 1.02878 1.21756 0.89799 0.99502 1.03931 1.22308 0.95997 0.88971 0.91090 0.85928 1.87990 1.37096 1.72281 1.32589 1.22993 0.84408 0.96150 1.03571 1.22033 0.79302 0.89692 0.81194 1.90737 1.39853 1.72949 1.41106 1.45791 1.54975 1.12360 1.22355 1.21538 0.97986 0.81110 0.95030 0.87905 1.22742 1.03698 0.93800 0.99360 1.21447 0.76179 0.89543 0.83607 1.90760 1.49429 1.27145 1.77896 1.48447 1.61164 1.11201 1.12962 1.23394 0.96723 0.86953 0.89511 1.22589 0.92269 0.85484 0.97407 1.46173 1.09468 1.20773 1.59857 1.19471 0.96691 0.95338 1.24949 0.89701 1.25740 0.95164 1.02775 1.02603 1.70044 1.01027 1.39836 1.49347 0.84919 0.77737 0.78504 0.77586 1.18780 1.22338 1.21043 1.23021 0.94479 0.89535 0.94561 1.22544 1.04362 0.79643 0.95597 0.92218 0.93548 0.91908 0.90169 0.92339 0.92367 0.87738 0.91300 0.88931 0.94705 0.73813 0.88857 0.86194 0.84110 0.96131 0.93718 0.94198 0.91249 0.96184 0.87321 0.86780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.20 9.91 71.98 0.71 -0.49 16 2 C -0.12 -0.85 5.79 30.60 0.18 -0.67 16 3 C -0.11 -0.98 4.89 30.60 0.15 -0.83 16 4 C 0.08 0.84 2.51 29.85 0.07 0.91 16 5 H 0.12 0.46 7.81 -2.39 -0.02 0.45 16 6 O -0.38 -6.31 9.50 -129.99 -1.24 -7.54 16 7 C 0.02 0.28 10.79 113.37 1.22 1.50 16 8 C 0.49 7.93 7.12 87.66 0.62 8.55 16 9 O -0.57 -15.26 16.25 15.95 0.26 -15.00 16 10 N -0.70 -7.23 5.08 -437.52 -2.22 -9.46 16 11 C 0.15 2.38 3.43 46.05 0.16 2.54 16 12 H 0.10 1.90 7.73 -2.39 -0.02 1.88 16 13 C -0.15 -3.60 6.59 30.59 0.20 -3.40 16 14 C 0.50 17.23 7.42 87.90 0.65 17.88 16 15 O -0.57 -27.23 14.61 -3.02 -0.04 -27.28 16 16 N -0.60 -17.24 3.16 -799.75 -2.52 -19.76 16 17 C 0.14 5.03 4.81 46.75 0.22 5.25 16 18 C 0.15 7.64 6.90 86.44 0.60 8.24 16 19 N -0.64 -35.11 3.70 -716.78 -2.65 -37.76 16 20 C -0.24 -14.02 10.70 84.03 0.90 -13.12 16 21 H 0.09 4.79 7.83 -2.91 -0.02 4.77 16 22 C -0.07 -4.18 5.50 84.86 0.47 -3.72 16 23 N -0.95 -60.27 11.39 21.65 0.25 -60.03 16 24 Si 0.99 47.46 29.55 68.60 2.03 49.49 16 25 H -0.26 -11.87 7.11 99.48 0.71 -11.17 16 26 H -0.30 -14.43 7.11 99.48 0.71 -13.73 16 27 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 28 C 0.11 4.80 8.44 86.49 0.73 5.53 16 29 C 0.10 1.47 7.07 86.83 0.61 2.09 16 30 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 31 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 32 H 0.06 0.40 8.14 -2.39 -0.02 0.39 16 33 H 0.08 0.31 8.14 -2.39 -0.02 0.29 16 34 H 0.06 0.59 7.93 -2.39 -0.02 0.57 16 35 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.10 0.43 7.76 -2.39 -0.02 0.42 16 37 H 0.07 0.39 8.11 -2.38 -0.02 0.37 16 38 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 39 H 0.03 0.46 8.14 -2.38 -0.02 0.44 16 40 H 0.42 1.15 8.07 -92.71 -0.75 0.41 16 41 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 42 H 0.12 2.41 8.08 -2.39 -0.02 2.39 16 43 H 0.14 4.24 8.14 -2.39 -0.02 4.22 16 44 H 0.02 1.22 5.72 -2.38 -0.01 1.20 16 45 H 0.04 2.49 7.16 -2.39 -0.02 2.47 16 46 H 0.25 15.14 8.31 -92.71 -0.77 14.37 16 47 H 0.07 2.65 8.14 -2.39 -0.02 2.63 16 48 H 0.02 0.97 7.25 -2.38 -0.02 0.95 16 49 H 0.11 0.95 7.77 -2.39 -0.02 0.94 16 50 H 0.11 1.18 8.14 -2.38 -0.02 1.16 16 Total: -1.00 -90.87 405.52 1.54 -89.32 By element: Atomic # 1 Polarization: 7.55 SS G_CDS: 0.19 Total: 7.74 kcal Atomic # 6 Polarization: 22.77 SS G_CDS: 7.51 Total: 30.27 kcal Atomic # 7 Polarization: -119.85 SS G_CDS: -7.15 Total: -127.00 kcal Atomic # 8 Polarization: -48.80 SS G_CDS: -1.02 Total: -49.82 kcal Atomic # 14 Polarization: 47.46 SS G_CDS: 2.03 Total: 49.49 kcal Total: -90.87 1.54 -89.32 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108560569.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.095 kcal (2) G-P(sol) polarization free energy of solvation -90.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds