Wall clock time and date at job start Tue Mar 31 2020 22:28:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47032 * 2 1 4 4 C 1.53001 * 109.47032 * 179.97438 * 3 2 1 5 5 H 1.08998 * 109.47291 * 54.99792 * 4 3 2 6 6 O 1.42901 * 109.47258 * 294.99495 * 4 3 2 7 7 C 1.42894 * 114.00194 * 149.99754 * 6 4 3 8 8 C 1.50705 * 109.47221 * 174.99882 * 4 3 2 9 9 O 1.21285 * 120.00275 * 114.99389 * 8 4 3 10 10 N 1.34780 * 120.00073 * 294.99957 * 8 4 3 11 11 C 1.46496 * 120.00306 * 179.97438 * 10 8 4 12 12 H 1.09005 * 110.88335 * 37.35237 * 11 10 8 13 13 C 1.54631 * 110.96794 * 273.54708 * 11 10 8 14 14 C 1.51279 * 104.19527 * 217.08095 * 13 11 10 15 15 O 1.21277 * 124.94563 * 196.22909 * 14 13 11 16 16 N 1.34425 * 110.11286 * 16.25255 * 14 13 11 17 17 C 1.46505 * 124.34914 * 180.40738 * 16 14 13 18 18 C 1.53493 * 114.20553 * 300.02717 * 17 16 14 19 19 N 1.47060 * 87.98914 * 87.51726 * 18 17 16 20 20 C 1.36935 * 136.05988 * 207.08611 * 19 18 17 21 21 H 1.08005 * 119.99877 * 359.97438 * 20 19 18 22 22 C 1.38811 * 120.00369 * 179.72694 * 20 19 18 23 23 N 1.31617 * 119.99773 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00451 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47045 * 359.97438 * 24 22 20 26 26 H 1.48492 * 109.47426 * 119.99572 * 24 22 20 27 27 H 1.48501 * 109.46833 * 239.99815 * 24 22 20 28 28 C 1.47066 * 87.88562 * 27.34336 * 19 18 17 29 29 C 1.46762 * 111.30125 * 0.67322 * 16 14 13 30 30 H 1.08997 * 109.47456 * 300.00677 * 1 2 3 31 31 H 1.09001 * 109.46655 * 60.00417 * 1 2 3 32 32 H 1.08997 * 109.47056 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47467 * 239.99854 * 2 1 3 34 34 H 1.09001 * 109.46655 * 119.99583 * 2 1 3 35 35 H 1.08997 * 109.47553 * 59.99382 * 3 2 1 36 36 H 1.09001 * 109.47060 * 299.99335 * 3 2 1 37 37 H 1.08997 * 109.46910 * 180.02562 * 7 6 4 38 38 H 1.08996 * 109.47463 * 300.00674 * 7 6 4 39 39 H 1.09004 * 109.46748 * 60.00532 * 7 6 4 40 40 H 0.97003 * 119.99490 * 359.97438 * 10 8 4 41 41 H 1.08999 * 110.48665 * 98.40355 * 13 11 10 42 42 H 1.08999 * 110.48520 * 335.75595 * 13 11 10 43 43 H 1.08991 * 113.28086 * 166.95340 * 17 16 14 44 44 H 1.08999 * 113.46842 * 332.73649 * 18 17 16 45 45 H 1.08999 * 113.46484 * 202.30050 * 18 17 16 46 46 H 0.97004 * 120.00382 * 180.02562 * 23 22 20 47 47 H 1.08995 * 113.47095 * 87.43770 * 28 19 18 48 48 H 1.09002 * 113.46562 * 217.88366 * 28 19 18 49 49 H 1.08996 * 110.24510 * 101.71913 * 29 16 14 50 50 H 1.09004 * 110.24220 * 223.71892 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9337 0.8529 -0.8409 6 8 4.0458 0.8734 1.2220 7 6 5.3055 0.2095 1.1020 8 6 4.0724 2.8579 -0.1232 9 8 4.6926 3.3633 0.7884 10 7 3.8325 3.5623 -1.2470 11 6 4.3204 4.9384 -1.3672 12 1 5.3001 5.0454 -0.9015 13 6 3.3082 5.9391 -0.7629 14 6 3.3782 7.1384 -1.6824 15 8 2.9563 8.2437 -1.4158 16 7 3.9758 6.8005 -2.8381 17 6 4.2137 7.7273 -3.9476 18 6 2.9384 8.3523 -4.5299 19 7 3.0562 9.4108 -3.5158 20 6 2.1944 10.2516 -2.8635 21 1 1.1359 10.2094 -3.0738 22 6 2.6807 11.1549 -1.9283 23 7 3.9700 11.2027 -1.6682 24 14 1.5051 12.3015 -1.0380 25 1 0.1185 12.0500 -1.5064 26 1 1.5862 12.0558 0.4242 27 1 1.8760 13.7106 -1.3245 28 6 4.5075 9.1733 -3.5152 29 6 4.3537 5.3824 -2.8483 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8901 35 1 1.6766 1.9564 0.8899 36 1 1.6767 1.9563 -0.8901 37 1 5.5967 -0.1951 2.0713 38 1 5.2207 -0.6028 0.3802 39 1 6.0596 0.9197 0.7628 40 1 3.3367 3.1580 -1.9762 41 1 3.6037 6.2164 0.2489 42 1 2.3043 5.5146 -0.7654 43 1 4.9015 7.3351 -4.6965 44 1 2.0533 7.7284 -4.4054 45 1 3.0595 8.7140 -5.5510 46 1 4.3099 11.8336 -1.0144 47 1 5.0423 9.7514 -4.2687 48 1 4.9593 9.2488 -2.5261 49 1 3.6381 4.8055 -3.4341 50 1 5.3582 5.2627 -3.2542 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108560570.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:10 Heat of formation + Delta-G solvation = -56.955110 kcal Electronic energy + Delta-G solvation = -30791.494613 eV Core-core repulsion = 26627.948163 eV Total energy + Delta-G solvation = -4163.546450 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.79333 -40.94396 -39.04020 -38.37225 -37.22285 -35.79096 -34.97917 -33.94253 -31.79837 -30.49730 -29.17900 -28.16409 -27.23441 -26.26419 -25.63123 -25.11133 -22.66666 -22.16538 -22.08884 -21.47179 -19.30280 -18.69145 -18.54836 -18.14402 -17.41189 -17.07866 -16.83926 -16.70013 -16.28102 -15.87032 -15.64125 -15.56297 -15.45988 -15.17454 -14.86498 -14.57013 -14.37923 -14.23666 -14.12313 -14.00980 -13.75327 -13.23695 -13.22663 -12.97561 -12.89074 -12.78684 -12.74083 -12.44979 -12.32501 -12.22002 -12.00990 -11.91883 -11.85448 -11.68315 -11.53614 -11.44667 -11.19175 -10.81308 -10.52529 -10.25887 -9.93836 -9.30886 -8.60762 -7.71041 -4.95556 1.38540 1.42747 1.49416 1.51517 1.86214 2.02846 2.32028 2.56403 2.83163 3.40145 3.51145 3.56222 3.64338 3.67084 3.86712 3.90479 3.96445 4.03312 4.07578 4.25393 4.33954 4.49287 4.51395 4.56933 4.59143 4.67510 4.70217 4.71333 4.78254 4.83924 4.85607 4.87848 4.90996 4.97935 4.98360 5.05130 5.25624 5.30141 5.36685 5.39537 5.40596 5.52693 5.62572 6.04887 6.07769 6.17616 6.52218 6.54812 7.07183 7.22705 7.72118 7.83751 8.80278 9.48499 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.015880 B = 0.002608 C = 0.002535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1762.787734 B =10735.286259 C =11044.091422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.115 4.115 3 C -0.113 4.113 4 C 0.080 3.920 5 H 0.126 0.874 6 O -0.383 6.383 7 C 0.025 3.975 8 C 0.488 3.512 9 O -0.574 6.574 10 N -0.697 5.697 11 C 0.150 3.850 12 H 0.092 0.908 13 C -0.157 4.157 14 C 0.474 3.526 15 O -0.490 6.490 16 N -0.604 5.604 17 C 0.130 3.870 18 C 0.103 3.897 19 N -0.618 5.618 20 C -0.174 4.174 21 H 0.062 0.938 22 C -0.057 4.057 23 N -0.946 5.946 24 Si 0.955 3.045 25 H -0.270 1.270 26 H -0.306 1.306 27 H -0.293 1.293 28 C 0.140 3.860 29 C 0.114 3.886 30 H 0.043 0.957 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.083 0.917 34 H 0.058 0.942 35 H 0.053 0.947 36 H 0.104 0.896 37 H 0.092 0.908 38 H 0.071 0.929 39 H 0.032 0.968 40 H 0.423 0.577 41 H 0.070 0.930 42 H 0.108 0.892 43 H 0.146 0.854 44 H 0.036 0.964 45 H 0.063 0.937 46 H 0.233 0.767 47 H 0.028 0.972 48 H 0.029 0.971 49 H 0.107 0.893 50 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.697 -31.731 -5.459 32.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.153 4.153 3 C -0.150 4.150 4 C 0.018 3.982 5 H 0.144 0.856 6 O -0.301 6.301 7 C -0.071 4.071 8 C 0.275 3.725 9 O -0.452 6.452 10 N -0.352 5.352 11 C 0.043 3.957 12 H 0.110 0.890 13 C -0.199 4.199 14 C 0.258 3.742 15 O -0.360 6.360 16 N -0.341 5.341 17 C 0.025 3.975 18 C -0.023 4.023 19 N -0.344 5.344 20 C -0.303 4.303 21 H 0.080 0.920 22 C -0.249 4.249 23 N -0.597 5.597 24 Si 0.786 3.214 25 H -0.195 1.195 26 H -0.235 1.235 27 H -0.221 1.221 28 C 0.013 3.987 29 C -0.008 4.008 30 H 0.062 0.938 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.102 0.898 34 H 0.077 0.923 35 H 0.072 0.928 36 H 0.122 0.878 37 H 0.111 0.889 38 H 0.090 0.910 39 H 0.051 0.949 40 H 0.262 0.738 41 H 0.089 0.911 42 H 0.127 0.873 43 H 0.163 0.837 44 H 0.054 0.946 45 H 0.081 0.919 46 H 0.042 0.958 47 H 0.046 0.954 48 H 0.048 0.952 49 H 0.125 0.875 50 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 0.672 -30.485 -4.308 30.795 hybrid contribution -0.505 1.423 0.752 1.687 sum 0.167 -29.062 -3.556 29.279 Atomic orbital electron populations 1.21788 0.95515 1.02118 1.01848 1.21440 0.95969 0.94849 1.03011 1.21760 0.89871 0.99636 1.03764 1.22297 0.96748 0.89020 0.90105 0.85613 1.87987 1.37698 1.72462 1.31921 1.23001 0.84231 0.95949 1.03957 1.22129 0.78876 0.89895 0.81635 1.90742 1.41883 1.72203 1.40337 1.45772 1.57635 1.12718 1.19123 1.21533 0.96901 0.80949 0.96287 0.89005 1.22695 1.02653 0.95418 0.99094 1.21418 0.78912 0.89745 0.84090 1.91189 1.45060 1.23916 1.75885 1.47853 1.60399 1.10443 1.15400 1.22481 0.97531 0.89169 0.88303 1.23071 0.96781 0.89275 0.93219 1.45455 1.03617 1.41869 1.43444 1.18733 0.88232 1.08992 1.14356 0.91981 1.25159 0.96958 1.01959 1.00846 1.69987 1.12556 1.39685 1.37511 0.85329 0.79108 0.78902 0.78013 1.19502 1.23466 1.22051 1.22409 0.86965 0.91315 0.98002 1.22374 1.03960 0.80105 0.94386 0.93786 0.91905 0.92012 0.89834 0.92286 0.92778 0.87753 0.88905 0.91013 0.94896 0.73800 0.91137 0.87334 0.83662 0.94564 0.91929 0.95783 0.95407 0.95229 0.87462 0.87118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.42 9.91 71.98 0.71 -0.71 16 2 C -0.12 -1.01 5.83 30.59 0.18 -0.83 16 3 C -0.11 -1.25 4.89 30.59 0.15 -1.10 16 4 C 0.08 1.06 2.52 29.85 0.08 1.14 16 5 H 0.13 0.69 7.79 -2.39 -0.02 0.68 16 6 O -0.38 -7.29 9.42 -129.99 -1.22 -8.51 16 7 C 0.02 0.33 10.81 113.37 1.23 1.55 16 8 C 0.49 9.73 7.13 87.66 0.63 10.36 16 9 O -0.57 -18.21 16.25 15.94 0.26 -17.95 16 10 N -0.70 -9.79 5.08 -437.24 -2.22 -12.01 16 11 C 0.15 3.14 3.44 46.11 0.16 3.30 16 12 H 0.09 2.29 7.73 -2.38 -0.02 2.28 16 13 C -0.16 -4.82 6.59 30.59 0.20 -4.61 16 14 C 0.47 19.35 7.56 87.90 0.66 20.02 16 15 O -0.49 -27.43 12.42 -3.02 -0.04 -27.47 16 16 N -0.60 -18.80 3.18 -792.51 -2.52 -21.31 16 17 C 0.13 4.31 5.13 45.55 0.23 4.54 16 18 C 0.10 4.00 8.33 83.17 0.69 4.70 16 19 N -0.62 -33.05 2.28 -738.08 -1.68 -34.73 16 20 C -0.17 -10.65 8.89 84.03 0.75 -9.91 16 21 H 0.06 3.76 7.83 -2.91 -0.02 3.74 16 22 C -0.06 -3.60 5.04 84.86 0.43 -3.18 16 23 N -0.95 -62.77 11.49 21.65 0.25 -62.52 16 24 Si 0.95 51.61 29.55 68.60 2.03 53.64 16 25 H -0.27 -13.77 7.11 99.48 0.71 -13.07 16 26 H -0.31 -17.01 7.11 99.48 0.71 -16.31 16 27 H -0.29 -15.48 7.11 99.48 0.71 -14.77 16 28 C 0.14 6.76 6.44 83.26 0.54 7.30 16 29 C 0.11 1.93 7.06 86.89 0.61 2.55 16 30 H 0.04 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 33 H 0.08 0.39 8.14 -2.39 -0.02 0.37 16 34 H 0.06 0.68 7.82 -2.39 -0.02 0.66 16 35 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.10 0.67 7.77 -2.39 -0.02 0.65 16 37 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.07 0.50 8.08 -2.39 -0.02 0.48 16 39 H 0.03 0.51 8.14 -2.39 -0.02 0.49 16 40 H 0.42 2.27 8.07 -92.71 -0.75 1.52 16 41 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 42 H 0.11 2.98 8.08 -2.39 -0.02 2.96 16 43 H 0.15 3.22 8.14 -2.39 -0.02 3.20 16 44 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 45 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 46 H 0.23 15.30 8.31 -92.71 -0.77 14.53 16 47 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 48 H 0.03 1.71 6.61 -2.39 -0.02 1.69 16 49 H 0.11 1.06 7.77 -2.39 -0.02 1.04 16 50 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 Total: -1.00 -95.81 402.28 2.28 -93.53 By element: Atomic # 1 Polarization: 2.04 SS G_CDS: 0.18 Total: 2.22 kcal Atomic # 6 Polarization: 27.87 SS G_CDS: 7.24 Total: 35.11 kcal Atomic # 7 Polarization: -124.40 SS G_CDS: -6.17 Total: -130.57 kcal Atomic # 8 Polarization: -52.93 SS G_CDS: -1.00 Total: -53.93 kcal Atomic # 14 Polarization: 51.61 SS G_CDS: 2.03 Total: 53.64 kcal Total: -95.81 2.28 -93.53 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108560570.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.574 kcal (2) G-P(sol) polarization free energy of solvation -95.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds