Wall clock time and date at job start Tue Mar 31 2020 22:28:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42898 * 113.99343 * 2 1 4 4 H 1.08995 * 109.47472 * 30.00647 * 3 2 1 5 5 C 1.50700 * 109.47636 * 269.99797 * 3 2 1 6 6 O 1.21287 * 119.99699 * 353.51151 * 5 3 2 7 7 N 1.34771 * 120.00387 * 173.50524 * 5 3 2 8 8 C 1.46497 * 120.00355 * 174.99246 * 7 5 3 9 9 H 1.09005 * 110.88428 * 322.64579 * 8 7 5 10 10 C 1.54625 * 110.97148 * 86.45187 * 8 7 5 11 11 C 1.51288 * 104.19184 * 93.32526 * 10 8 7 12 12 O 1.21282 * 124.94086 * 196.27803 * 11 10 8 13 13 N 1.34413 * 110.11766 * 16.25350 * 11 10 8 14 14 C 1.46503 * 124.35308 * 180.41034 * 13 11 10 15 15 C 1.53499 * 114.20304 * 60.02101 * 14 13 11 16 16 N 1.47067 * 87.98300 * 220.15191 * 15 14 13 17 17 C 1.36935 * 136.05722 * 207.08982 * 16 15 14 18 18 H 1.07995 * 120.00287 * 359.97438 * 17 16 15 19 19 C 1.38816 * 119.99849 * 179.72584 * 17 16 15 20 20 N 1.31612 * 120.00158 * 359.97438 * 19 17 16 21 21 Si 1.86808 * 119.99765 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47287 * 359.97438 * 21 19 17 23 23 H 1.48495 * 109.47096 * 119.99703 * 21 19 17 24 24 H 1.48496 * 109.46995 * 239.99852 * 21 19 17 25 25 C 1.47068 * 87.88551 * 27.34456 * 16 15 14 26 26 C 1.46768 * 111.29899 * 0.67278 * 13 11 10 27 27 C 1.53001 * 109.46660 * 150.00273 * 3 2 1 28 28 C 1.53002 * 109.47195 * 294.62314 * 27 3 2 29 29 C 1.52995 * 109.47596 * 54.62686 * 27 3 2 30 30 H 1.09004 * 109.46628 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47057 * 299.99512 * 1 2 3 32 32 H 1.08997 * 109.47631 * 60.00122 * 1 2 3 33 33 H 0.97004 * 120.00097 * 354.99085 * 7 5 3 34 34 H 1.09002 * 110.48395 * 334.64867 * 10 8 7 35 35 H 1.08998 * 110.60434 * 212.05488 * 10 8 7 36 36 H 1.08994 * 113.28073 * 193.09198 * 14 13 11 37 37 H 1.09006 * 113.46504 * 105.37678 * 15 14 13 38 38 H 1.08996 * 113.46841 * 334.92981 * 15 14 13 39 39 H 0.96998 * 120.00037 * 180.02562 * 20 19 17 40 40 H 1.08995 * 113.46594 * 87.43786 * 25 16 15 41 41 H 1.09003 * 113.46791 * 217.87993 * 25 16 15 42 42 H 1.08997 * 110.24514 * 101.72268 * 26 13 11 43 43 H 1.09007 * 110.24486 * 223.71808 * 26 13 11 44 44 H 1.09003 * 109.47384 * 174.62693 * 27 3 2 45 45 H 1.08998 * 109.46892 * 55.27728 * 28 27 3 46 46 H 1.08997 * 109.47027 * 175.26998 * 28 27 3 47 47 H 1.08993 * 109.47342 * 295.27737 * 28 27 3 48 48 H 1.09003 * 109.46697 * 59.99688 * 29 27 3 49 49 H 1.09000 * 109.47847 * 179.97438 * 29 27 3 50 50 H 1.09000 * 109.47176 * 300.00107 * 29 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3449 1.9993 0.5139 5 6 2.2145 1.7645 -1.4208 6 8 2.0051 1.0020 -2.3404 7 7 2.6298 3.0223 -1.6695 8 6 2.9339 3.4355 -3.0417 9 1 3.4101 2.6258 -3.5948 10 6 1.6596 3.9264 -3.7671 11 6 1.6586 5.4226 -3.5433 12 8 0.7002 6.1483 -3.7039 13 7 2.8743 5.8306 -3.1402 14 6 3.2181 7.2197 -2.8264 15 6 2.3894 7.8314 -1.6883 16 7 2.3372 9.0784 -2.4663 17 6 2.2076 10.4120 -2.1839 18 1 2.1121 10.7403 -1.1595 19 6 2.2042 11.3424 -3.2141 20 7 2.3260 10.9429 -4.4621 21 14 2.0267 13.1617 -2.8288 22 1 1.9063 13.3474 -1.3604 23 1 3.2215 13.8914 -3.3241 24 1 0.8108 13.6925 -3.4958 25 6 2.4789 8.2621 -3.6814 26 6 3.8146 4.7066 -3.0608 27 6 3.3588 1.2633 0.7212 28 6 3.1375 0.9276 2.1975 29 6 4.2457 0.1929 0.0822 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 2.7274 3.6541 -0.9399 34 1 0.7714 3.4741 -3.3260 35 1 1.7132 3.7000 -4.8320 36 1 4.2913 7.3886 -2.7386 37 1 2.9405 7.9263 -0.7526 38 1 1.4154 7.3597 -1.5585 39 1 2.3240 11.5930 -5.1819 40 1 1.5285 7.9040 -4.0770 41 1 3.1062 8.7240 -4.4439 42 1 4.4706 4.7014 -3.9313 43 1 4.4025 4.7706 -2.1451 44 1 3.8456 2.2351 0.6387 45 1 2.5765 -0.0034 2.2782 46 1 4.1018 0.8148 2.6929 47 1 2.5765 1.7321 2.6729 48 1 4.4034 0.4321 -0.9695 49 1 5.2067 0.1631 0.5957 50 1 3.7591 -0.7789 0.1647 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108569948.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:18 Heat of formation + Delta-G solvation = -46.481052 kcal Electronic energy + Delta-G solvation = -30746.890602 eV Core-core repulsion = 26583.798341 eV Total energy + Delta-G solvation = -4163.092261 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -40.98149 -40.07392 -38.06210 -37.30342 -36.32933 -35.31376 -33.90770 -32.22875 -30.59967 -28.39895 -27.61251 -27.47550 -27.15466 -26.17146 -24.55267 -23.53998 -22.26162 -21.25311 -20.56735 -20.27890 -18.41202 -17.87490 -17.33635 -16.88176 -16.60834 -16.30193 -15.96248 -15.27246 -15.15152 -14.85711 -14.78186 -14.37078 -14.29893 -13.95328 -13.82420 -13.65156 -13.50328 -13.29189 -12.89133 -12.77069 -12.59710 -12.39409 -12.02369 -11.94093 -11.82753 -11.77076 -11.52616 -11.50017 -11.37256 -11.20634 -11.12043 -10.89213 -10.83088 -10.79019 -10.13379 -10.04537 -9.61372 -9.55865 -9.42805 -9.18015 -8.68310 -8.17530 -6.84627 -5.75440 -3.08155 2.28503 2.67153 2.90902 3.20690 3.39754 3.40608 3.44840 3.47360 4.17706 4.26789 4.32836 4.41701 4.48162 4.50471 4.68905 4.73424 4.90566 5.00602 5.04536 5.09994 5.22591 5.26023 5.34167 5.37034 5.39247 5.40391 5.49181 5.51696 5.54700 5.59149 5.61735 5.67237 5.69329 5.83175 5.90328 6.05623 6.16160 6.26652 6.42335 6.54280 6.62158 6.84878 7.17065 7.24943 7.46793 7.56125 7.63574 7.91377 7.97711 8.53702 9.04218 9.70715 10.64201 11.41945 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.019691 B = 0.002406 C = 0.002322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1421.616319 B =11633.276563 C =12056.991903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.352 6.352 3 C 0.076 3.924 4 H 0.086 0.914 5 C 0.495 3.505 6 O -0.520 6.520 7 N -0.720 5.720 8 C 0.135 3.865 9 H 0.113 0.887 10 C -0.166 4.166 11 C 0.512 3.488 12 O -0.510 6.510 13 N -0.606 5.606 14 C 0.092 3.908 15 C 0.112 3.888 16 N -0.603 5.603 17 C -0.216 4.216 18 H 0.082 0.918 19 C -0.008 4.008 20 N -0.917 5.917 21 Si 0.914 3.086 22 H -0.279 1.279 23 H -0.290 1.290 24 H -0.290 1.290 25 C 0.140 3.860 26 C 0.097 3.903 27 C -0.086 4.086 28 C -0.147 4.147 29 C -0.144 4.144 30 H 0.090 0.910 31 H 0.043 0.957 32 H 0.045 0.955 33 H 0.403 0.597 34 H 0.099 0.901 35 H 0.111 0.889 36 H 0.109 0.891 37 H 0.037 0.963 38 H 0.037 0.963 39 H 0.253 0.747 40 H 0.062 0.938 41 H 0.068 0.932 42 H 0.087 0.913 43 H 0.084 0.916 44 H 0.086 0.914 45 H 0.064 0.936 46 H 0.061 0.939 47 H 0.055 0.945 48 H 0.054 0.946 49 H 0.056 0.944 50 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.594 -23.970 10.117 26.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.269 6.269 3 C 0.014 3.986 4 H 0.104 0.896 5 C 0.280 3.720 6 O -0.395 6.395 7 N -0.375 5.375 8 C 0.030 3.970 9 H 0.131 0.869 10 C -0.207 4.207 11 C 0.299 3.701 12 O -0.385 6.385 13 N -0.341 5.341 14 C -0.011 4.011 15 C -0.016 4.016 16 N -0.329 5.329 17 C -0.344 4.344 18 H 0.100 0.900 19 C -0.205 4.205 20 N -0.563 5.563 21 Si 0.745 3.255 22 H -0.204 1.204 23 H -0.217 1.217 24 H -0.217 1.217 25 C 0.014 3.986 26 C -0.028 4.028 27 C -0.105 4.105 28 C -0.204 4.204 29 C -0.201 4.201 30 H 0.108 0.892 31 H 0.061 0.939 32 H 0.064 0.936 33 H 0.238 0.762 34 H 0.118 0.882 35 H 0.129 0.871 36 H 0.127 0.873 37 H 0.056 0.944 38 H 0.054 0.946 39 H 0.063 0.937 40 H 0.080 0.920 41 H 0.086 0.914 42 H 0.105 0.895 43 H 0.102 0.898 44 H 0.104 0.896 45 H 0.083 0.917 46 H 0.080 0.920 47 H 0.074 0.926 48 H 0.073 0.927 49 H 0.075 0.925 50 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 4.038 -23.873 9.316 25.942 hybrid contribution -0.371 1.571 0.397 1.662 sum 3.668 -22.302 9.713 24.600 Atomic orbital electron populations 1.22887 0.80606 1.03268 1.00158 1.87982 1.19943 1.24617 1.94314 1.22142 0.97332 0.87070 0.92024 0.89604 1.21382 0.76684 0.81560 0.92332 1.90726 1.48852 1.53859 1.46018 1.46080 1.69142 1.12915 1.09342 1.21853 0.95145 0.96819 0.83179 0.86917 1.22806 1.00055 0.94471 1.03391 1.20715 0.82800 0.89950 0.76669 1.90765 1.36647 1.60186 1.50908 1.48410 1.10799 1.07786 1.67126 1.23852 0.99663 0.76806 1.00782 1.22747 0.96686 0.88010 0.94169 1.45280 1.85152 0.99585 1.02892 1.18935 1.43726 0.78829 0.92893 0.90002 1.24829 1.02305 0.98146 0.95188 1.69849 1.55809 1.32625 0.98033 0.86012 0.77364 0.84734 0.77438 1.20425 1.21656 1.21680 1.22738 0.98294 0.86015 0.91566 1.22364 0.92404 0.84596 1.03418 1.21221 0.92623 1.00895 0.95740 1.21817 1.02241 1.02305 0.94036 1.21748 0.98734 0.99352 1.00305 0.89180 0.93867 0.93628 0.76157 0.88249 0.87116 0.87289 0.94439 0.94588 0.93653 0.92008 0.91359 0.89516 0.89790 0.89558 0.91659 0.92021 0.92586 0.92708 0.92465 0.91407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 10.81 101.05 1.09 1.30 16 2 O -0.35 -3.38 8.47 -55.06 -0.47 -3.85 16 3 C 0.08 0.61 2.20 -27.88 -0.06 0.55 16 4 H 0.09 0.56 7.79 -51.93 -0.40 0.15 16 5 C 0.49 4.97 6.11 -10.99 -0.07 4.90 16 6 O -0.52 -7.15 16.31 -14.27 -0.23 -7.38 16 7 N -0.72 -6.06 5.09 -52.14 -0.27 -6.32 16 8 C 0.14 1.23 3.38 -66.21 -0.22 1.01 16 9 H 0.11 0.96 7.80 -51.93 -0.41 0.56 16 10 C -0.17 -1.97 6.58 -26.74 -0.18 -2.14 16 11 C 0.51 8.41 7.49 -10.86 -0.08 8.33 16 12 O -0.51 -11.18 14.49 5.56 0.08 -11.10 16 13 N -0.61 -8.80 3.18 -164.35 -0.52 -9.32 16 14 C 0.09 1.69 5.02 -67.68 -0.34 1.35 16 15 C 0.11 2.35 8.24 -8.50 -0.07 2.28 16 16 N -0.60 -16.09 3.78 -184.61 -0.70 -16.79 16 17 C -0.22 -6.24 10.75 -15.06 -0.16 -6.40 16 18 H 0.08 2.26 7.83 -52.49 -0.41 1.85 16 19 C -0.01 -0.23 5.50 -17.43 -0.10 -0.32 16 20 N -0.92 -28.02 11.49 55.49 0.64 -27.38 16 21 Si 0.91 22.50 29.55 -169.99 -5.02 17.47 16 22 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 23 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 24 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 25 C 0.14 3.47 6.83 -8.37 -0.06 3.42 16 26 C 0.10 0.89 6.98 -3.03 -0.02 0.87 16 27 C -0.09 -0.56 2.73 -90.62 -0.25 -0.80 16 28 C -0.15 -0.82 9.14 37.16 0.34 -0.48 16 29 C -0.14 -1.07 8.81 37.15 0.33 -0.75 16 30 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.04 0.26 8.08 -51.93 -0.42 -0.16 16 32 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.40 2.76 8.59 -40.82 -0.35 2.41 16 34 H 0.10 1.25 8.09 -51.93 -0.42 0.83 16 35 H 0.11 1.18 8.14 -51.93 -0.42 0.76 16 36 H 0.11 1.83 8.14 -51.93 -0.42 1.40 16 37 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 38 H 0.04 0.81 7.40 -51.93 -0.38 0.43 16 39 H 0.25 7.45 8.31 -40.82 -0.34 7.12 16 40 H 0.06 1.70 5.40 -51.93 -0.28 1.42 16 41 H 0.07 1.85 7.10 -51.93 -0.37 1.49 16 42 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.08 0.62 8.05 -51.93 -0.42 0.20 16 44 H 0.09 0.44 8.08 -51.93 -0.42 0.02 16 45 H 0.06 0.41 7.71 -51.93 -0.40 0.01 16 46 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 47 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 48 H 0.05 0.47 7.39 -51.93 -0.38 0.09 16 49 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 50 H 0.07 0.58 7.55 -51.93 -0.39 0.19 16 LS Contribution 402.71 15.07 6.07 6.07 Total: -1.00 -37.38 402.71 -8.66 -46.05 By element: Atomic # 1 Polarization: 7.83 SS G_CDS: -8.40 Total: -0.57 kcal Atomic # 6 Polarization: 12.97 SS G_CDS: 0.16 Total: 13.12 kcal Atomic # 7 Polarization: -58.96 SS G_CDS: -0.85 Total: -59.81 kcal Atomic # 8 Polarization: -21.71 SS G_CDS: -0.62 Total: -22.33 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.02 Total: 17.47 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -37.38 -8.66 -46.05 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108569948.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.436 kcal (2) G-P(sol) polarization free energy of solvation -37.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds