Wall clock time and date at job start Tue Mar 31 2020 22:28:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42896 * 114.00120 * 2 1 4 4 H 1.09004 * 109.47304 * 359.39140 * 3 2 1 5 5 C 1.50697 * 109.46841 * 119.39016 * 3 2 1 6 6 O 1.21284 * 120.00414 * 4.27592 * 5 3 2 7 7 N 1.34776 * 119.99888 * 184.27766 * 5 3 2 8 8 C 1.46503 * 120.00286 * 184.65287 * 7 5 3 9 9 H 1.09001 * 110.85594 * 328.79272 * 8 7 5 10 10 C 1.54638 * 110.96489 * 92.61935 * 8 7 5 11 11 C 1.51283 * 104.19261 * 93.32562 * 10 8 7 12 12 O 1.21286 * 124.93995 * 196.24846 * 11 10 8 13 13 N 1.34419 * 110.11815 * 16.25033 * 11 10 8 14 14 C 1.46496 * 124.35174 * 180.42849 * 13 11 10 15 15 C 1.53943 * 113.74089 * 38.71547 * 14 13 11 16 16 N 1.47804 * 86.04060 * 222.08625 * 15 14 13 17 17 C 1.36939 * 134.45744 * 204.64776 * 16 15 14 18 18 H 1.08003 * 119.99685 * 179.86439 * 17 16 15 19 19 C 1.38810 * 120.00307 * 359.86691 * 17 16 15 20 20 N 1.31621 * 119.99439 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 120.00263 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47215 * 59.99161 * 21 19 17 23 23 H 1.48497 * 109.47091 * 179.97438 * 21 19 17 24 24 H 1.48504 * 109.46690 * 299.99298 * 21 19 17 25 25 C 1.47579 * 91.04823 * 24.54884 * 16 15 14 26 26 C 1.46765 * 111.29944 * 0.40971 * 13 11 10 27 27 C 1.52995 * 109.47008 * 239.38782 * 3 2 1 28 28 C 1.53000 * 109.47397 * 301.17200 * 27 3 2 29 29 C 1.52998 * 109.47158 * 61.17692 * 27 3 2 30 30 H 1.09003 * 109.46790 * 303.94350 * 1 2 3 31 31 H 1.08999 * 109.47174 * 63.94398 * 1 2 3 32 32 H 1.09002 * 109.47060 * 183.94865 * 1 2 3 33 33 H 0.97005 * 120.00159 * 4.65417 * 7 5 3 34 34 H 1.09000 * 110.48255 * 211.99753 * 10 8 7 35 35 H 1.08994 * 110.48837 * 334.64860 * 10 8 7 36 36 H 1.08997 * 112.94806 * 170.30798 * 14 13 11 37 37 H 1.09002 * 113.77437 * 336.35291 * 15 14 13 38 38 H 1.09002 * 113.77133 * 107.74501 * 15 14 13 39 39 H 0.97006 * 119.99406 * 180.02562 * 20 19 17 40 40 H 1.09003 * 113.76816 * 221.15325 * 25 16 15 41 41 H 1.09003 * 113.77212 * 89.75920 * 25 16 15 42 42 H 1.09004 * 110.24473 * 223.98816 * 26 13 11 43 43 H 1.08998 * 110.25061 * 101.98660 * 26 13 11 44 44 H 1.09003 * 109.46954 * 181.17273 * 27 3 2 45 45 H 1.09001 * 109.46863 * 64.42554 * 28 27 3 46 46 H 1.08995 * 109.46830 * 184.42426 * 28 27 3 47 47 H 1.09003 * 109.47108 * 304.42645 * 28 27 3 48 48 H 1.08997 * 109.47364 * 54.13391 * 29 27 3 49 49 H 1.08998 * 109.47458 * 174.13611 * 29 27 3 50 50 H 1.09007 * 109.46953 * 294.13382 * 29 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.2193 2.0554 -0.0109 5 6 2.8516 1.4806 1.2379 6 8 3.0073 0.5516 2.0019 7 7 3.4309 2.6698 1.4962 8 6 4.3306 2.8125 2.6436 9 1 4.0357 2.1452 3.4534 10 6 5.7997 2.5652 2.2289 11 6 6.3325 3.9449 1.9104 12 8 7.3476 4.1704 1.2861 13 7 5.5172 4.8843 2.4199 14 6 5.7333 6.3271 2.2864 15 6 6.2770 6.7475 0.9089 16 7 7.1720 7.6577 1.6539 17 6 7.8230 8.8235 1.3503 18 1 8.4351 9.3100 2.0953 19 6 7.6962 9.3801 0.0850 20 7 6.9506 8.7869 -0.8231 21 14 8.5849 10.9700 -0.3295 22 1 10.0483 10.7758 -0.1679 23 1 8.2886 11.3511 -1.7338 24 1 8.1246 12.0468 0.5837 25 6 7.0802 6.8073 2.8566 26 6 4.3823 4.2789 3.1267 27 6 2.8888 1.4725 -1.2414 28 6 3.9814 0.4015 -1.2410 29 6 2.0291 1.3236 -2.4983 30 1 -0.3633 0.5738 0.8526 31 1 -0.3633 0.4514 -0.9232 32 1 -0.3633 -1.0252 0.0708 33 1 3.2522 3.4312 0.9224 34 1 6.3589 2.1211 3.0524 35 1 5.8448 1.9260 1.3472 36 1 4.8800 6.9173 2.6202 37 1 6.8011 5.9505 0.3814 38 1 5.5451 7.2617 0.2860 39 1 6.8623 9.1756 -1.7074 40 1 6.9884 7.3693 3.7861 41 1 7.8408 6.0279 2.9027 42 1 3.4577 4.7943 2.8668 43 1 4.5456 4.3157 4.2038 44 1 3.3486 2.4607 -1.2308 45 1 3.5243 -0.5839 -1.3309 46 1 4.6539 0.5683 -2.0825 47 1 4.5445 0.4573 -0.3093 48 1 1.1897 2.0171 -2.4486 49 1 2.6318 1.5451 -3.3791 50 1 1.6534 0.3024 -2.5626 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108569950.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:25 Heat of formation + Delta-G solvation = -50.078482 kcal Electronic energy + Delta-G solvation = -30955.512440 eV Core-core repulsion = 26792.264183 eV Total energy + Delta-G solvation = -4163.248257 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -40.92796 -39.99936 -38.07686 -37.18298 -36.30449 -35.10739 -33.83668 -32.18155 -30.55348 -28.51540 -27.56549 -27.35389 -27.09263 -26.06842 -24.75151 -23.44331 -22.21303 -21.23012 -20.48716 -20.19805 -18.30483 -17.78645 -17.35306 -16.80728 -16.59455 -16.28957 -16.00018 -15.21830 -15.14205 -14.87013 -14.61033 -14.33701 -14.26405 -13.96456 -13.80796 -13.58965 -13.47547 -13.24962 -12.84611 -12.69148 -12.50828 -12.29527 -12.01609 -11.91041 -11.81918 -11.73315 -11.44344 -11.39949 -11.36563 -11.29805 -11.03880 -10.83960 -10.71761 -10.52264 -10.22039 -10.01556 -9.62519 -9.54878 -9.47612 -9.15453 -8.67360 -8.19901 -6.82989 -5.73890 -3.05501 2.32477 2.64695 2.93588 3.24084 3.41577 3.46035 3.47223 3.55192 4.20974 4.36755 4.38106 4.42372 4.50287 4.52644 4.75849 4.80728 4.92132 5.01456 5.03951 5.11202 5.22980 5.29910 5.34925 5.36419 5.40981 5.48908 5.52297 5.57076 5.58410 5.61469 5.67530 5.74693 5.81838 5.84361 5.99659 6.16642 6.19733 6.27952 6.50988 6.57920 6.67028 6.86321 7.22298 7.26278 7.48203 7.56131 7.60943 7.96789 7.99767 8.55760 9.07110 9.73300 10.62343 11.43370 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.016018 B = 0.002697 C = 0.002476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1747.660873 B =10378.708442 C =11305.119487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.351 6.351 3 C 0.076 3.924 4 H 0.089 0.911 5 C 0.508 3.492 6 O -0.520 6.520 7 N -0.720 5.720 8 C 0.134 3.866 9 H 0.117 0.883 10 C -0.168 4.168 11 C 0.512 3.488 12 O -0.509 6.509 13 N -0.609 5.609 14 C 0.098 3.902 15 C 0.154 3.846 16 N -0.605 5.605 17 C -0.220 4.220 18 H 0.079 0.921 19 C -0.008 4.008 20 N -0.920 5.920 21 Si 0.913 3.087 22 H -0.285 1.285 23 H -0.290 1.290 24 H -0.284 1.284 25 C 0.111 3.889 26 C 0.095 3.905 27 C -0.100 4.100 28 C -0.144 4.144 29 C -0.145 4.145 30 H 0.042 0.958 31 H 0.044 0.956 32 H 0.089 0.911 33 H 0.405 0.595 34 H 0.110 0.890 35 H 0.101 0.899 36 H 0.105 0.895 37 H 0.055 0.945 38 H 0.069 0.931 39 H 0.254 0.746 40 H 0.042 0.958 41 H 0.040 0.960 42 H 0.083 0.917 43 H 0.085 0.915 44 H 0.087 0.913 45 H 0.065 0.935 46 H 0.058 0.942 47 H 0.053 0.947 48 H 0.053 0.947 49 H 0.062 0.938 50 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.241 -16.644 3.402 23.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.268 6.268 3 C 0.015 3.985 4 H 0.107 0.893 5 C 0.293 3.707 6 O -0.394 6.394 7 N -0.375 5.375 8 C 0.028 3.972 9 H 0.135 0.865 10 C -0.209 4.209 11 C 0.299 3.701 12 O -0.383 6.383 13 N -0.345 5.345 14 C -0.004 4.004 15 C 0.028 3.972 16 N -0.331 5.331 17 C -0.348 4.348 18 H 0.097 0.903 19 C -0.204 4.204 20 N -0.567 5.567 21 Si 0.744 3.256 22 H -0.212 1.212 23 H -0.216 1.216 24 H -0.211 1.211 25 C -0.016 4.016 26 C -0.029 4.029 27 C -0.119 4.119 28 C -0.201 4.201 29 C -0.202 4.202 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.107 0.893 33 H 0.240 0.760 34 H 0.128 0.872 35 H 0.119 0.881 36 H 0.123 0.877 37 H 0.073 0.927 38 H 0.088 0.912 39 H 0.064 0.936 40 H 0.060 0.940 41 H 0.058 0.942 42 H 0.102 0.898 43 H 0.103 0.897 44 H 0.105 0.895 45 H 0.084 0.916 46 H 0.077 0.923 47 H 0.073 0.927 48 H 0.072 0.928 49 H 0.081 0.919 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -15.366 -17.029 3.385 23.185 hybrid contribution 0.242 1.482 -0.475 1.575 sum -15.124 -15.547 2.911 21.884 Atomic orbital electron populations 1.22940 0.80823 1.03214 0.99952 1.88023 1.19527 1.24809 1.94469 1.22129 0.96150 0.87392 0.92877 0.89337 1.20922 0.80154 0.82475 0.87105 1.90715 1.60569 1.39899 1.48240 1.46024 1.47849 1.12731 1.30888 1.21848 0.88808 0.96994 0.89525 0.86492 1.22846 0.96259 0.97021 1.04823 1.20677 0.83616 0.86955 0.78877 1.90794 1.24065 1.84214 1.39275 1.48539 1.24977 1.06802 1.54156 1.24052 0.98139 0.76084 1.02151 1.22761 0.92140 0.91354 0.90903 1.45696 1.56120 1.21933 1.09373 1.18941 1.22993 0.95974 0.96885 0.90273 1.24789 1.00484 0.99274 0.95889 1.69817 1.42475 1.39930 1.04471 0.86181 0.79358 0.82878 0.77223 1.21179 1.21554 1.21097 1.22919 0.93760 0.92975 0.91934 1.22345 0.91022 0.91881 0.97690 1.21432 0.96283 1.00943 0.93257 1.21753 0.97519 0.98897 1.01926 1.21802 0.99426 1.02271 0.96734 0.93929 0.93754 0.89258 0.76025 0.87188 0.88084 0.87725 0.92717 0.91235 0.93649 0.94002 0.94219 0.89830 0.89738 0.89496 0.91641 0.92286 0.92747 0.92768 0.91882 0.91910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 10.70 101.05 1.08 1.26 16 2 O -0.35 -3.52 8.73 -55.11 -0.48 -4.00 16 3 C 0.08 0.67 2.38 -27.89 -0.07 0.60 16 4 H 0.09 0.56 7.60 -51.93 -0.39 0.17 16 5 C 0.51 5.42 5.90 -10.99 -0.06 5.36 16 6 O -0.52 -7.47 16.12 -14.32 -0.23 -7.70 16 7 N -0.72 -6.51 5.05 -52.22 -0.26 -6.78 16 8 C 0.13 1.26 3.57 -66.29 -0.24 1.02 16 9 H 0.12 1.05 7.48 -51.93 -0.39 0.66 16 10 C -0.17 -1.97 6.59 -26.74 -0.18 -2.14 16 11 C 0.51 8.37 7.42 -10.86 -0.08 8.29 16 12 O -0.51 -11.12 14.61 5.55 0.08 -11.04 16 13 N -0.61 -8.84 3.15 -166.64 -0.53 -9.37 16 14 C 0.10 1.80 4.81 -70.15 -0.34 1.47 16 15 C 0.15 3.74 6.90 -2.84 -0.02 3.72 16 16 N -0.60 -16.10 3.70 -177.89 -0.66 -16.76 16 17 C -0.22 -6.36 10.70 -15.06 -0.16 -6.52 16 18 H 0.08 2.19 7.83 -52.48 -0.41 1.78 16 19 C -0.01 -0.23 5.50 -17.43 -0.10 -0.32 16 20 N -0.92 -27.74 11.39 55.49 0.63 -27.10 16 21 Si 0.91 22.52 29.55 -169.99 -5.02 17.49 16 22 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 23 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 24 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 25 C 0.11 2.39 8.43 -2.97 -0.03 2.37 16 26 C 0.10 0.90 6.97 -3.12 -0.02 0.87 16 27 C -0.10 -0.85 2.75 -90.62 -0.25 -1.10 16 28 C -0.14 -1.43 8.82 37.16 0.33 -1.10 16 29 C -0.15 -1.04 8.98 37.16 0.33 -0.71 16 30 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.04 0.23 8.14 -51.93 -0.42 -0.20 16 32 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.40 3.16 8.53 -40.82 -0.35 2.81 16 34 H 0.11 1.13 8.14 -51.93 -0.42 0.70 16 35 H 0.10 1.25 8.09 -51.93 -0.42 0.83 16 36 H 0.10 1.72 8.14 -51.93 -0.42 1.30 16 37 H 0.06 1.47 5.74 -51.93 -0.30 1.18 16 38 H 0.07 1.81 7.17 -51.93 -0.37 1.44 16 39 H 0.25 7.40 8.31 -40.82 -0.34 7.06 16 40 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 41 H 0.04 0.91 7.23 -51.93 -0.38 0.54 16 42 H 0.08 0.66 8.08 -51.93 -0.42 0.24 16 43 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.09 0.71 7.98 -51.93 -0.41 0.30 16 45 H 0.06 0.68 7.79 -51.93 -0.40 0.27 16 46 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 47 H 0.05 0.62 7.10 -51.93 -0.37 0.25 16 48 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 49 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 50 H 0.06 0.46 7.89 -51.92 -0.41 0.05 16 LS Contribution 402.29 15.07 6.06 6.06 Total: -1.00 -37.29 402.29 -8.59 -45.88 By element: Atomic # 1 Polarization: 8.65 SS G_CDS: -8.39 Total: 0.26 kcal Atomic # 6 Polarization: 12.85 SS G_CDS: 0.21 Total: 13.06 kcal Atomic # 7 Polarization: -59.20 SS G_CDS: -0.82 Total: -60.01 kcal Atomic # 8 Polarization: -22.12 SS G_CDS: -0.63 Total: -22.75 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.49 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -37.29 -8.59 -45.88 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108569950.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.201 kcal (2) G-P(sol) polarization free energy of solvation -37.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds