Wall clock time and date at job start Tue Mar 31 2020 22:27:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.46957 * 2 1 4 4 C 1.52993 * 109.46911 * 120.00491 * 2 1 3 5 5 H 1.09005 * 109.46925 * 182.15420 * 4 2 1 6 6 O 1.42901 * 109.47032 * 302.14869 * 4 2 1 7 7 C 1.50698 * 109.47643 * 62.15450 * 4 2 1 8 8 O 1.21282 * 119.99816 * 244.54405 * 7 4 2 9 9 N 1.34770 * 120.00052 * 64.53652 * 7 4 2 10 10 C 1.46503 * 120.00334 * 184.96279 * 9 7 4 11 11 H 1.08997 * 110.54597 * 35.55665 * 10 9 7 12 12 C 1.54827 * 110.75116 * 158.51783 * 10 9 7 13 13 C 1.58529 * 103.27972 * 118.92976 * 12 10 9 14 14 H 1.08998 * 116.16495 * 159.42346 * 13 12 10 15 15 C 1.55850 * 104.44888 * 287.98613 * 13 12 10 16 16 C 1.54834 * 103.51805 * 71.43335 * 15 13 12 17 17 C 1.55853 * 110.61173 * 272.69852 * 10 9 7 18 18 H 1.08998 * 115.58147 * 81.68406 * 17 10 9 19 19 N 1.50643 * 100.89958 * 32.51168 * 13 12 10 20 20 C 1.46891 * 111.00232 * 190.41008 * 19 13 12 21 21 C 1.50704 * 109.47075 * 278.08895 * 20 19 13 22 22 O 1.21290 * 119.99956 * 0.02562 * 21 20 19 23 23 N 1.34776 * 120.00073 * 179.97438 * 21 20 19 24 24 C 1.37093 * 120.00198 * 180.02562 * 23 21 20 25 25 H 1.08006 * 119.99671 * 359.97438 * 24 23 21 26 26 C 1.38946 * 120.00355 * 180.02562 * 24 23 21 27 27 N 1.31409 * 120.00194 * 180.02562 * 26 24 23 28 28 Si 1.86802 * 119.99799 * 359.97438 * 26 24 23 29 29 H 1.48506 * 109.46511 * 90.00367 * 28 26 24 30 30 H 1.48502 * 109.47210 * 209.99808 * 28 26 24 31 31 H 1.48496 * 109.47305 * 330.00660 * 28 26 24 32 32 H 1.08997 * 109.47114 * 299.99785 * 1 2 3 33 33 H 1.09003 * 109.46870 * 59.99792 * 1 2 3 34 34 H 1.08992 * 109.47205 * 179.97438 * 1 2 3 35 35 H 1.09005 * 109.46508 * 240.00139 * 2 1 3 36 36 H 1.09000 * 109.47310 * 64.72006 * 3 2 1 37 37 H 1.09005 * 109.46735 * 184.71377 * 3 2 1 38 38 H 1.08997 * 109.47511 * 304.71392 * 3 2 1 39 39 H 0.96699 * 113.99847 * 60.00901 * 6 4 2 40 40 H 0.97002 * 119.99932 * 4.96358 * 9 7 4 41 41 H 1.08998 * 110.61645 * 237.08303 * 12 10 9 42 42 H 1.09002 * 110.61306 * 359.90771 * 12 10 9 43 43 H 1.09001 * 110.61346 * 312.92392 * 15 13 12 44 44 H 1.09002 * 110.61074 * 189.93628 * 15 13 12 45 45 H 1.09002 * 110.61479 * 118.50015 * 16 15 13 46 46 H 1.08995 * 110.61390 * 241.33607 * 16 15 13 47 47 H 1.09002 * 109.47434 * 38.09153 * 20 19 13 48 48 H 1.09007 * 109.47311 * 158.09077 * 20 19 13 49 49 H 0.97005 * 120.00246 * 359.97438 * 23 21 20 50 50 H 0.97001 * 119.99906 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 1 3.1293 -0.6880 1.2687 6 8 1.5228 -0.0776 2.4154 7 6 1.5818 -2.1567 1.2227 8 8 0.8149 -2.5641 2.0694 9 7 2.0240 -2.9876 0.2581 10 6 1.4961 -4.3512 0.1671 11 1 0.4406 -4.3717 0.4383 12 6 1.7048 -4.9264 -1.2551 13 6 2.6295 -6.1896 -1.0049 14 1 2.6314 -6.9467 -1.7889 15 6 4.0219 -5.5875 -0.6475 16 6 3.8078 -4.9949 0.7668 17 6 2.3146 -5.3181 1.0750 18 1 2.0410 -5.3176 2.1301 19 7 2.1488 -6.6300 0.3532 20 6 3.0345 -7.6570 0.9176 21 6 2.6715 -9.0030 0.3453 22 8 1.7646 -9.0974 -0.4545 23 7 3.3554 -10.1018 0.7214 24 6 3.0255 -11.3262 0.2004 25 1 2.2174 -11.4104 -0.5112 26 6 3.7302 -12.4591 0.5885 27 7 3.4143 -13.6327 0.0887 28 14 5.1275 -12.3137 1.8198 29 1 4.5936 -12.4779 3.1958 30 1 6.1361 -13.3699 1.5509 31 1 5.7632 -10.9779 1.6916 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 -0.3633 -1.0276 -0.0005 35 1 1.8933 -0.5139 -0.8901 36 1 1.7473 1.9314 0.9292 37 1 3.1268 1.4436 -0.0845 38 1 1.6094 1.9802 -0.8447 39 1 0.5571 -0.0698 2.4648 40 1 2.6918 -2.6828 -0.3759 41 1 0.7528 -5.2320 -1.6890 42 1 2.2003 -4.1966 -1.8953 43 1 4.2942 -4.8040 -1.3547 44 1 4.7830 -6.3675 -0.6255 45 1 4.4627 -5.4812 1.4898 46 1 3.9766 -3.9181 0.7612 47 1 4.0690 -7.4225 0.6668 48 1 2.9197 -7.6800 2.0014 49 1 4.0815 -10.0262 1.3602 50 1 3.9065 -14.4235 0.3594 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001109232107.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:27:52 Heat of formation + Delta-G solvation = -120.402743 kcal Electronic energy + Delta-G solvation = -30745.830978 eV Core-core repulsion = 26579.533232 eV Total energy + Delta-G solvation = -4166.297746 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.29828 -40.95402 -39.85893 -38.11161 -36.07854 -35.73269 -34.66281 -33.76172 -32.38375 -31.12585 -30.14637 -28.66513 -28.11065 -27.54306 -25.71753 -23.20618 -22.47069 -21.66251 -21.13871 -20.95219 -20.49989 -20.03464 -18.88521 -17.84925 -17.56285 -17.48354 -17.02032 -16.81298 -16.54881 -16.26716 -15.93332 -15.41522 -15.30709 -15.12340 -14.62925 -14.57770 -14.41930 -14.08102 -13.93081 -13.78273 -13.44673 -13.30721 -13.20078 -13.03006 -12.97984 -12.73923 -12.62685 -12.58969 -12.45165 -12.34658 -12.12220 -12.00935 -11.98852 -11.83913 -11.78746 -11.51359 -11.45442 -11.12334 -10.51070 -10.45929 -10.24842 -10.05019 -9.46409 -8.41925 -6.02427 1.27856 1.34054 1.42361 1.54006 1.95773 2.01727 2.21595 2.66371 3.12357 3.18373 3.30752 3.44628 3.58997 3.71227 3.76362 3.85472 3.92190 4.05428 4.12802 4.18715 4.21761 4.25068 4.31648 4.33875 4.40461 4.53801 4.57151 4.61153 4.68374 4.81165 4.86572 4.92966 4.97056 5.02451 5.03361 5.10829 5.16702 5.18132 5.23448 5.33269 5.43841 5.47643 5.52059 5.75150 5.87004 5.99536 6.40869 6.59491 6.64048 6.88109 7.22115 7.39545 7.97362 8.75810 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.028667 B = 0.002254 C = 0.002210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.507450 B =12421.371434 C =12664.254874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.114 4.114 3 C -0.142 4.142 4 C 0.100 3.900 5 H 0.144 0.856 6 O -0.551 6.551 7 C 0.486 3.514 8 O -0.576 6.576 9 N -0.696 5.696 10 C 0.160 3.840 11 H 0.070 0.930 12 C -0.104 4.104 13 C 0.042 3.958 14 H 0.090 0.910 15 C -0.148 4.148 16 C -0.143 4.143 17 C 0.035 3.965 18 H 0.099 0.901 19 N -0.499 5.499 20 C 0.038 3.962 21 C 0.455 3.545 22 O -0.607 6.607 23 N -0.594 5.594 24 C -0.326 4.326 25 H 0.055 0.945 26 C -0.016 4.016 27 N -0.934 5.934 28 Si 0.964 3.036 29 H -0.259 1.259 30 H -0.273 1.273 31 H -0.232 1.232 32 H 0.058 0.942 33 H 0.074 0.926 34 H 0.039 0.961 35 H 0.103 0.897 36 H 0.054 0.946 37 H 0.067 0.933 38 H 0.065 0.935 39 H 0.385 0.615 40 H 0.418 0.582 41 H 0.069 0.931 42 H 0.113 0.887 43 H 0.105 0.895 44 H 0.061 0.939 45 H 0.068 0.932 46 H 0.096 0.904 47 H 0.090 0.910 48 H 0.104 0.896 49 H 0.388 0.612 50 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.491 33.670 -0.020 34.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.133 4.133 3 C -0.199 4.199 4 C 0.037 3.963 5 H 0.161 0.839 6 O -0.358 6.358 7 C 0.273 3.727 8 O -0.455 6.455 9 N -0.351 5.351 10 C 0.054 3.946 11 H 0.088 0.912 12 C -0.142 4.142 13 C -0.066 4.066 14 H 0.108 0.892 15 C -0.186 4.186 16 C -0.182 4.182 17 C -0.075 4.075 18 H 0.117 0.883 19 N -0.222 5.222 20 C -0.094 4.094 21 C 0.243 3.757 22 O -0.490 6.490 23 N -0.237 5.237 24 C -0.455 4.455 25 H 0.073 0.927 26 C -0.215 4.215 27 N -0.575 5.575 28 Si 0.784 3.216 29 H -0.184 1.184 30 H -0.198 1.198 31 H -0.155 1.155 32 H 0.077 0.923 33 H 0.093 0.907 34 H 0.058 0.942 35 H 0.121 0.879 36 H 0.073 0.927 37 H 0.086 0.914 38 H 0.084 0.916 39 H 0.235 0.765 40 H 0.256 0.744 41 H 0.088 0.912 42 H 0.131 0.869 43 H 0.123 0.877 44 H 0.080 0.920 45 H 0.087 0.913 46 H 0.114 0.886 47 H 0.108 0.892 48 H 0.123 0.877 49 H 0.223 0.777 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 4.362 32.941 0.172 33.229 hybrid contribution 0.709 -1.011 0.273 1.264 sum 5.071 31.930 0.445 32.333 Atomic orbital electron populations 1.21905 0.95219 1.01333 1.03098 1.21750 0.96373 0.98284 0.96930 1.21757 1.01731 0.94039 1.02366 1.22118 1.01204 0.85695 0.87258 0.83857 1.86551 1.27851 1.78137 1.43231 1.22159 0.80379 0.89770 0.80398 1.90740 1.37484 1.78267 1.39034 1.45955 1.44244 1.11854 1.33051 1.21510 0.97092 0.80560 0.95445 0.91205 1.23254 1.00394 0.95712 0.94855 1.24904 0.94202 0.95628 0.91880 0.89198 1.23302 0.96842 1.00983 0.97519 1.23226 0.95461 1.02902 0.96610 1.24760 0.96082 0.88603 0.98027 0.88286 1.67226 1.46836 1.04862 1.03309 1.21998 0.97606 0.89204 1.00611 1.20848 0.83917 0.86413 0.84565 1.90530 1.33324 1.86942 1.38216 1.42046 1.33108 1.06429 1.42078 1.18982 1.17606 0.84202 1.24695 0.92717 1.26103 1.01425 0.93754 1.00195 1.69803 1.42920 0.99644 1.45167 0.85374 0.77683 0.80209 0.78306 1.18408 1.19798 1.15531 0.92263 0.90708 0.94181 0.87871 0.92733 0.91362 0.91558 0.76473 0.74365 0.91250 0.86850 0.87679 0.92005 0.91281 0.88551 0.89215 0.87749 0.77685 0.91166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.51 8.62 71.98 0.62 -0.89 16 2 C -0.11 -0.77 2.75 -10.80 -0.03 -0.80 16 3 C -0.14 -0.81 9.13 71.98 0.66 -0.15 16 4 C 0.10 1.09 3.16 29.84 0.09 1.18 16 5 H 0.14 0.94 8.14 -2.38 -0.02 0.92 16 6 O -0.55 -8.73 12.26 -129.98 -1.59 -10.32 16 7 C 0.49 8.22 6.00 87.66 0.53 8.74 16 8 O -0.58 -15.80 16.08 15.96 0.26 -15.54 16 9 N -0.70 -8.79 3.59 -434.95 -1.56 -10.35 16 10 C 0.16 3.22 3.06 46.60 0.14 3.37 16 11 H 0.07 1.85 7.73 -2.39 -0.02 1.83 16 12 C -0.10 -1.95 6.30 33.20 0.21 -1.74 16 13 C 0.04 1.09 4.67 47.14 0.22 1.31 16 14 H 0.09 2.93 7.99 -2.39 -0.02 2.92 16 15 C -0.15 -2.60 5.62 32.21 0.18 -2.42 16 16 C -0.14 -2.39 5.52 32.21 0.18 -2.21 16 17 C 0.03 0.82 4.75 46.15 0.22 1.04 16 18 H 0.10 2.64 8.14 -2.39 -0.02 2.62 16 19 N -0.50 -15.60 5.11 -803.34 -4.10 -19.70 16 20 C 0.04 1.24 4.82 85.56 0.41 1.65 16 21 C 0.45 21.36 7.72 87.66 0.68 22.04 16 22 O -0.61 -34.68 15.61 -3.06 -0.05 -34.73 16 23 N -0.59 -28.91 5.09 -306.98 -1.56 -30.47 16 24 C -0.33 -19.46 10.16 84.04 0.85 -18.61 16 25 H 0.05 3.89 7.39 -2.91 -0.02 3.87 16 26 C -0.02 -0.92 5.50 84.93 0.47 -0.46 16 27 N -0.93 -57.09 13.96 21.66 0.30 -56.78 16 28 Si 0.96 39.55 27.74 68.60 1.90 41.45 16 29 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 30 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 31 H -0.23 -8.01 6.52 99.48 0.65 -7.36 16 32 H 0.06 0.57 6.75 -2.39 -0.02 0.55 16 33 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 34 H 0.04 0.55 7.28 -2.39 -0.02 0.53 16 35 H 0.10 0.32 7.98 -2.38 -0.02 0.30 16 36 H 0.05 0.45 7.61 -2.39 -0.02 0.43 16 37 H 0.07 0.27 8.14 -2.38 -0.02 0.25 16 38 H 0.07 0.31 8.14 -2.39 -0.02 0.29 16 39 H 0.38 5.38 7.02 -74.06 -0.52 4.86 16 40 H 0.42 2.16 7.86 -92.71 -0.73 1.43 16 41 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 42 H 0.11 1.20 7.40 -2.39 -0.02 1.18 16 43 H 0.10 1.15 7.84 -2.39 -0.02 1.13 16 44 H 0.06 1.23 6.95 -2.39 -0.02 1.21 16 45 H 0.07 1.17 7.63 -2.39 -0.02 1.16 16 46 H 0.10 1.13 6.43 -2.39 -0.02 1.11 16 47 H 0.09 2.45 5.10 -2.39 -0.01 2.44 16 48 H 0.10 3.07 8.09 -2.38 -0.02 3.05 16 49 H 0.39 15.73 5.76 -92.70 -0.53 15.19 16 50 H 0.28 15.55 8.31 -92.71 -0.77 14.78 16 Total: -1.00 -85.62 387.91 -1.83 -87.45 By element: Atomic # 1 Polarization: 37.79 SS G_CDS: -0.85 Total: 36.94 kcal Atomic # 6 Polarization: 6.62 SS G_CDS: 5.43 Total: 12.05 kcal Atomic # 7 Polarization: -110.38 SS G_CDS: -6.92 Total: -117.30 kcal Atomic # 8 Polarization: -59.20 SS G_CDS: -1.39 Total: -60.59 kcal Atomic # 14 Polarization: 39.55 SS G_CDS: 1.90 Total: 41.45 kcal Total: -85.62 -1.83 -87.45 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001109232107.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.948 kcal (2) G-P(sol) polarization free energy of solvation -85.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds